Strain Fitness in Pantoea sp. MT58 around IAI47_13465

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,856,988	-		IAI47_13455	0.88	+0.7
2,856,999	+		IAI47_13455	0.89	+1.3
2,856,999	+		IAI47_13455	0.89	-1.5
2,856,999	+		IAI47_13455	0.89	-0.5
2,856,999	+		IAI47_13455	0.89	-2.1
2,857,000	-		IAI47_13455	0.89	-0.2
2,857,000	-		IAI47_13455	0.89	-1.5
2,857,004	+		IAI47_13455	0.89	+0.2
2,857,004	+		IAI47_13455	0.89	+0.8
2,857,021	+				-0.1
2,857,022	-				-0.1
2,857,035	+				-0.5
2,857,036	-				-0.4
2,857,036	-				+0.0
2,857,142	+				+1.1
2,857,142	+				-1.0
2,857,211	+				-2.7
2,857,212	-				-2.2
2,857,239	-		IAI47_13460	0.12	+4.0
2,857,239	-		IAI47_13460	0.12	+1.4
2,857,307	+		IAI47_13460	0.22	+0.2
2,857,308	-		IAI47_13460	0.22	+0.8
2,857,341	+		IAI47_13460	0.27	+0.9
2,857,343	+		IAI47_13460	0.27	+3.9
2,857,343	+		IAI47_13460	0.27	+0.4
2,857,343	+		IAI47_13460	0.27	-0.1
2,857,343	+		IAI47_13460	0.27	+0.7
2,857,343	+		IAI47_13460	0.27	-1.7
2,857,343	+		IAI47_13460	0.27	-2.5
2,857,344	-		IAI47_13460	0.27	-0.1
2,857,344	-		IAI47_13460	0.27	-1.1
2,857,344	-		IAI47_13460	0.27	-0.7
2,857,344	-		IAI47_13460	0.27	+0.8
2,857,344	-		IAI47_13460	0.27	+0.4
2,857,347	+		IAI47_13460	0.27	+0.6
2,857,347	+		IAI47_13460	0.27	+2.5
2,857,347	+		IAI47_13460	0.27	+0.9
2,857,347	+		IAI47_13460	0.27	-1.1
2,857,347	+		IAI47_13460	0.27	+0.2
2,857,348	-		IAI47_13460	0.28	+0.6
2,857,466	+		IAI47_13460	0.44	+0.1
2,857,467	-		IAI47_13460	0.44	-0.5
2,857,467	-		IAI47_13460	0.44	+0.6
2,857,467	-		IAI47_13460	0.44	+1.0
2,857,472	+		IAI47_13460	0.45	+1.7
2,857,472	+		IAI47_13460	0.45	+0.6
2,857,472	+		IAI47_13460	0.45	+0.5
2,857,473	-		IAI47_13460	0.45	-0.2
2,857,473	-		IAI47_13460	0.45	+0.5
2,857,473	-		IAI47_13460	0.45	-0.5
2,857,473	-		IAI47_13460	0.45	-0.6
2,857,473	-		IAI47_13460	0.45	-0.7
2,857,532	+		IAI47_13460	0.54	+1.8
2,857,532	+		IAI47_13460	0.54	+0.2
2,857,532	+		IAI47_13460	0.54	+0.8
2,857,532	+		IAI47_13460	0.54	+2.3
2,857,532	+		IAI47_13460	0.54	-1.2
2,857,532	+		IAI47_13460	0.54	-0.4
2,857,533	-		IAI47_13460	0.54	-1.7
2,857,533	-		IAI47_13460	0.54	+0.6
2,857,533	-		IAI47_13460	0.54	-0.1
2,857,533	-		IAI47_13460	0.54	-1.0
2,857,533	-		IAI47_13460	0.54	-1.2
2,857,533	-		IAI47_13460	0.54	+1.3
2,857,538	+		IAI47_13460	0.54	-0.7
2,857,538	+		IAI47_13460	0.54	-0.3
2,857,551	+		IAI47_13460	0.56	-1.2
2,857,551	+		IAI47_13460	0.56	+0.8
2,857,551	+		IAI47_13460	0.56	-0.9
2,857,552	-		IAI47_13460	0.56	-0.6
2,857,552	-		IAI47_13460	0.56	+1.5
2,857,584	-		IAI47_13460	0.61	+1.1
2,857,584	-		IAI47_13460	0.61	+0.0
2,857,584	-		IAI47_13460	0.61	+4.3
2,857,590	+		IAI47_13460	0.62	+2.2
2,857,590	+		IAI47_13460	0.62	+0.9
2,857,590	+		IAI47_13460	0.62	-1.1
2,857,590	+		IAI47_13460	0.62	-0.2
2,857,590	+		IAI47_13460	0.62	+0.7
2,857,590	+		IAI47_13460	0.62	-0.7
2,857,590	+		IAI47_13460	0.62	-0.5
2,857,591	-		IAI47_13460	0.62	-2.2
2,857,591	-		IAI47_13460	0.62	+0.5
2,857,591	-		IAI47_13460	0.62	+0.1
2,857,591	-		IAI47_13460	0.62	+1.6
2,857,591	-		IAI47_13460	0.62	-0.4
2,857,591	-		IAI47_13460	0.62	-0.1
2,857,591	-		IAI47_13460	0.62	+1.0
2,857,591	-		IAI47_13460	0.62	+1.7
2,857,591	-		IAI47_13460	0.62	+0.1
2,857,591	-		IAI47_13460	0.62	+0.9
2,857,591	-		IAI47_13460	0.62	-0.6
2,857,736	+		IAI47_13460	0.82	-1.9
2,857,736	+		IAI47_13460	0.82	-1.4
2,857,736	+		IAI47_13460	0.82	+0.1
2,857,736	+		IAI47_13460	0.82	+0.0
2,857,737	-		IAI47_13460	0.82	+0.8
2,857,760	-		IAI47_13460	0.86	-0.7
2,857,784	+		IAI47_13460	0.89	-1.8
2,857,785	-		IAI47_13460	0.89	+0.3
2,857,797	+				+0.7
2,857,797	+				-1.2
2,857,797	+				+0.2
2,857,799	+				-0.5
2,857,799	+				-0.0
2,857,799	+				+0.1
2,857,799	+				-1.6
2,857,799	+				-0.7
2,857,799	+				-2.0
2,857,799	+				+0.1
2,857,799	+				+0.7
2,857,799	+				+1.4
2,857,799	+				-0.8
2,857,799	+				+0.7
2,857,799	+				-0.9
2,857,800	-				-1.7
2,857,800	-				-0.9
2,857,800	-				+1.2
2,857,800	-				+0.9
2,857,800	-				+1.8
2,857,800	-				-0.4
2,857,800	-				-1.2
2,857,800	-				-0.4
2,857,800	-				-1.9
2,857,800	-				-0.5
2,857,800	-				+0.9
2,857,800	-				+0.9
2,857,800	-				-0.7
2,857,807	+				-0.3
2,857,876	-				-2.2
2,857,876	-				+1.7
2,857,876	-				-0.1
2,857,922	+				+1.8
2,857,922	+				-2.1
2,857,922	+				-1.4
2,857,922	+				-1.4
2,857,922	+				-1.1
2,857,923	-				+1.4
2,857,923	-				-1.9
2,857,923	-				+2.8
2,857,923	-				+0.2
2,857,923	-				-0.7
2,857,923	-				+0.1
2,857,990	+				+0.5
2,858,033	+				-0.5
2,858,033	+				-1.6
2,858,034	-				-1.4
2,858,034	-				+3.6
2,858,117	+		IAI47_13465	0.14	-1.1
2,858,118	-		IAI47_13465	0.14	+1.0
2,858,118	-		IAI47_13465	0.14	-2.5
2,858,362	+		IAI47_13465	0.36	-0.1
2,858,362	+		IAI47_13465	0.36	+0.9
2,858,363	-		IAI47_13465	0.36	-0.2
2,858,363	-		IAI47_13465	0.36	-0.2
2,858,363	-		IAI47_13465	0.36	+2.2
2,858,363	-		IAI47_13465	0.36	+0.4
2,858,363	-		IAI47_13465	0.36	-1.6
2,858,378	-		IAI47_13465	0.38	-0.7
2,858,392	+		IAI47_13465	0.39	-1.6
2,858,392	+		IAI47_13465	0.39	+1.9
2,858,392	+		IAI47_13465	0.39	-0.2
2,858,393	-		IAI47_13465	0.39	-0.4
2,858,393	-		IAI47_13465	0.39	-0.9
2,858,393	-		IAI47_13465	0.39	+0.4
2,858,420	+		IAI47_13465	0.42	-0.7
2,858,420	+		IAI47_13465	0.42	-0.9
2,858,420	+		IAI47_13465	0.42	-0.7
2,858,420	+		IAI47_13465	0.42	-1.9
2,858,420	+		IAI47_13465	0.42	-0.4
2,858,420	+		IAI47_13465	0.42	-0.8
2,858,420	+		IAI47_13465	0.42	+0.5
2,858,421	-		IAI47_13465	0.42	-2.0
2,858,564	+		IAI47_13465	0.55	-1.6
2,858,565	-		IAI47_13465	0.55	-0.6
2,858,565	-		IAI47_13465	0.55	-0.4
2,858,616	-		IAI47_13465	0.59	-2.2
2,858,616	-		IAI47_13465	0.59	-0.5
2,858,663	-		IAI47_13465	0.64	-1.0
2,858,840	+		IAI47_13465	0.80	+0.8
2,858,840	+		IAI47_13465	0.80	+0.3
2,858,841	-		IAI47_13465	0.80	-0.4
2,858,841	-		IAI47_13465	0.80	-0.7
2,858,881	+		IAI47_13465	0.84	+0.4
2,858,881	+		IAI47_13465	0.84	+1.0
2,858,881	+		IAI47_13465	0.84	-1.2
2,858,882	-		IAI47_13465	0.84	+0.2
2,858,882	-		IAI47_13465	0.84	-2.0
2,858,882	-		IAI47_13465	0.84	+0.6
2,858,882	-		IAI47_13465	0.84	+0.3
2,858,882	-		IAI47_13465	0.84	-0.3
2,858,882	-		IAI47_13465	0.84	-2.3
2,858,882	-		IAI47_13465	0.84	+0.8
2,858,882	-		IAI47_13465	0.84	-0.6
2,858,882	-		IAI47_13465	0.84	+0.3
2,858,906	+		IAI47_13465	0.86	+0.5
2,858,906	+		IAI47_13465	0.86	+1.1
2,858,906	+		IAI47_13465	0.86	+1.0
2,858,906	+		IAI47_13465	0.86	+1.0
2,858,910	-		IAI47_13465	0.86	-0.2
2,858,910	-		IAI47_13465	0.86	-1.1
2,858,910	-		IAI47_13465	0.86	+0.1
2,858,996	+				-0.4
2,858,996	+				+1.2
2,858,997	-				+0.7
2,859,087	+				-1.2
2,859,092	+				+2.7
2,859,093	-				+0.8
2,859,093	-				-0.0
2,859,093	-				+1.9
2,859,093	-				-0.6
2,859,093	-				-0.1
2,859,093	-				+0.1
2,859,131	+				+2.7
2,859,131	+				+0.1
2,859,131	+				-0.6
2,859,131	+				+0.4
2,859,131	+				-0.1
2,859,131	+				+0.5
2,859,131	+				+0.5
2,859,131	+				+1.2
2,859,131	+				+0.6
2,859,131	+				-0.1
2,859,131	+				-0.4
2,859,132	-				-0.6
2,859,132	-				+2.3
2,859,132	-				+1.0
2,859,132	-				-0.7
2,859,132	-				-1.2
2,859,132	-				+0.9
2,859,132	-				-0.9
2,859,132	-				+0.6
2,859,132	-				-1.3
2,859,138	-				+0.4
2,859,138	-				-0.6
2,859,146	+				+0.9
2,859,153	-				-2.0
2,859,162	+				-0.6
2,859,162	+				-0.2
2,859,162	+				-0.8
2,859,162	+				-1.6
2,859,163	-				-0.1
2,859,163	-				+0.7
2,859,163	-				+0.7
2,859,163	-				-1.2
2,859,163	-				+0.4
2,859,163	-				+0.6
2,859,171	+				-1.0
2,859,203	+				+1.7
2,859,203	+				+1.7
2,859,204	-				+0.9
2,859,204	-				-0.5
2,859,206	+				+0.3
2,859,225	+				-1.0
2,859,226	-				-0.1
2,859,226	-				+0.2
2,859,228	+				+0.5
2,859,229	-				+0.9
2,859,229	-				+0.1
2,859,229	-				-0.3
2,859,229	-				+0.9
2,859,229	-				+1.0
2,859,229	-				+2.5
2,859,229	-				+1.3
2,859,276	+		IAI47_13470	0.14	+4.0
2,859,276	+		IAI47_13470	0.14	-0.9
2,859,276	+		IAI47_13470	0.14	+0.5
2,859,276	+		IAI47_13470	0.14	+1.1
2,859,276	+		IAI47_13470	0.14	+0.7
2,859,277	-		IAI47_13470	0.14	-1.5
2,859,277	-		IAI47_13470	0.14	+1.8
2,859,277	-		IAI47_13470	0.14	-1.6
2,859,321	+		IAI47_13470	0.20	+1.8
2,859,333	+		IAI47_13470	0.21	+0.9
2,859,333	+		IAI47_13470	0.21	+1.2
2,859,334	-		IAI47_13470	0.21	-0.1
2,859,340	+		IAI47_13470	0.22	-1.0
2,859,340	+		IAI47_13470	0.22	-0.9
2,859,340	+		IAI47_13470	0.22	+1.9
2,859,340	+		IAI47_13470	0.22	-0.0
2,859,340	+		IAI47_13470	0.22	+0.8
2,859,340	+		IAI47_13470	0.22	+0.9
2,859,341	-		IAI47_13470	0.22	+0.1
2,859,341	-		IAI47_13470	0.22	-1.7
2,859,341	-		IAI47_13470	0.22	+0.7
2,859,341	-		IAI47_13470	0.22	-1.0
2,859,361	+		IAI47_13470	0.25	-1.3
2,859,362	-		IAI47_13470	0.25	-1.1
2,859,363	+		IAI47_13470	0.25	-0.6
2,859,400	+		IAI47_13470	0.30	+1.0
2,859,400	+		IAI47_13470	0.30	+1.6
2,859,400	+		IAI47_13470	0.30	+0.5
2,859,400	+		IAI47_13470	0.30	+2.5
2,859,400	+		IAI47_13470	0.30	+2.0
2,859,400	+		IAI47_13470	0.30	-1.1
2,859,400	+		IAI47_13470	0.30	-0.6
2,859,400	+		IAI47_13470	0.30	-0.2
2,859,400	+		IAI47_13470	0.30	+1.4
2,859,401	-		IAI47_13470	0.30	+0.9
2,859,401	-		IAI47_13470	0.30	+1.4
2,859,401	-		IAI47_13470	0.30	+1.8
2,859,401	-		IAI47_13470	0.30	+0.7
2,859,401	-		IAI47_13470	0.30	+1.0
2,859,401	-		IAI47_13470	0.30	+3.2
2,859,401	-		IAI47_13470	0.30	+0.4
2,859,442	+		IAI47_13470	0.35	-0.8
2,859,443	-		IAI47_13470	0.35	+0.1
2,859,453	+		IAI47_13470	0.37	+0.1
2,859,454	-		IAI47_13470	0.37	+0.6
2,859,454	-		IAI47_13470	0.37	+0.9
2,859,484	+		IAI47_13470	0.40	-0.0
2,859,484	+		IAI47_13470	0.40	+0.9
2,859,484	+		IAI47_13470	0.40	+2.2
2,859,484	+		IAI47_13470	0.40	+1.3
2,859,484	+		IAI47_13470	0.40	+0.3
2,859,484	+		IAI47_13470	0.40	-1.6
2,859,485	-		IAI47_13470	0.41	+0.6
2,859,489	+		IAI47_13470	0.41	-1.3
2,859,490	-		IAI47_13470	0.41	-0.7
2,859,490	-		IAI47_13470	0.41	-0.7
2,859,490	-		IAI47_13470	0.41	-2.3
2,859,490	-		IAI47_13470	0.41	+2.3
2,859,507	+		IAI47_13470	0.43	+0.8
2,859,508	-		IAI47_13470	0.44	+0.6
2,859,553	+		IAI47_13470	0.49	-0.3
2,859,553	+		IAI47_13470	0.49	+1.6
2,859,553	+		IAI47_13470	0.49	+0.3
2,859,553	+		IAI47_13470	0.49	-0.6
2,859,553	+		IAI47_13470	0.49	+0.1
2,859,553	+		IAI47_13470	0.49	+2.2
2,859,553	+		IAI47_13470	0.49	-0.6
2,859,553	+		IAI47_13470	0.49	+1.9
2,859,553	+		IAI47_13470	0.49	+0.9
2,859,553	+		IAI47_13470	0.49	-1.1
2,859,553	+		IAI47_13470	0.49	-0.4
2,859,554	-		IAI47_13470	0.49	-1.8
2,859,554	-		IAI47_13470	0.49	+0.6
2,859,637	+		IAI47_13470	0.60	+0.3
2,859,637	+		IAI47_13470	0.60	+0.5
2,859,637	+		IAI47_13470	0.60	+0.6
2,859,638	-		IAI47_13470	0.60	+0.4
2,859,675	+		IAI47_13470	0.65	-1.8
2,859,717	+		IAI47_13470	0.70	-1.3
2,859,717	+		IAI47_13470	0.70	-0.4
2,859,717	+		IAI47_13470	0.70	-0.5
2,859,717	+		IAI47_13470	0.70	-0.8
2,859,718	-		IAI47_13470	0.70	+0.5
2,859,783	+		IAI47_13470	0.78	-1.5
2,859,783	+		IAI47_13470	0.78	-0.9
2,859,784	-		IAI47_13470	0.79	-1.4
2,859,784	-		IAI47_13470	0.79	+1.1
2,859,816	-		IAI47_13470	0.83	+0.3
2,859,816	-		IAI47_13470	0.83	+0.5
2,859,816	-		IAI47_13470	0.83	-0.3
2,859,865	-		IAI47_13470	0.89	+0.6
2,859,865	-		IAI47_13470	0.89	-0.6
2,859,938	+				-0.9
2,859,938	+				+0.8
2,859,938	+				-0.9
2,859,939	-				-0.1
2,859,939	-				+0.4
2,859,939	-				-0.6
2,859,950	-				+1.0
2,859,961	+				-0.6
2,859,961	+				+1.4
2,859,961	+				-0.4
2,859,961	+				+0.3
2,859,961	+				+0.2
2,859,961	+				-0.1
2,859,961	+				-2.1
2,859,961	+				-0.0
2,859,962	-				-0.0
2,859,962	-				-1.3
2,859,962	-				-2.6
2,859,991	+				+0.6
2,859,991	+				+0.1
2,859,992	-				+1.3
2,859,992	-				-0.1
2,860,041	-				-0.2
2,860,051	+				-1.1
2,860,051	+				-1.3