Strain Fitness in Pantoea sp. MT58 around IAI47_12780

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,690,934	+		IAI47_12770	0.77	+0.7
2,690,935	-		IAI47_12770	0.78	-0.0
2,690,935	-		IAI47_12770	0.78	+1.9
2,691,060	+				-0.8
2,691,060	+				-0.1
2,691,060	+				-1.1
2,691,061	-				+0.5
2,691,061	-				+1.3
2,691,061	-				+0.5
2,691,061	-				-2.0
2,691,116	+				+0.2
2,691,117	-				+0.8
2,691,144	+				-1.0
2,691,144	+				-0.4
2,691,144	+				+1.3
2,691,144	+				-1.8
2,691,144	+				+0.7
2,691,144	+				-1.8
2,691,144	+				-1.3
2,691,144	+				-0.4
2,691,144	+				+0.2
2,691,144	+				-1.4
2,691,144	+				+1.9
2,691,145	-				-1.3
2,691,145	-				+1.0
2,691,145	-				+1.1
2,691,145	-				+0.0
2,691,145	-				-0.1
2,691,145	-				+0.6
2,691,148	+				+1.3
2,691,148	+				-2.4
2,691,148	+				+0.1
2,691,148	+				-0.4
2,691,149	-				-2.3
2,691,149	-				-1.9
2,691,149	-				-1.6
2,691,149	-				-0.2
2,691,149	-				+0.1
2,691,149	-				+0.8
2,691,157	-				-0.5
2,691,168	-				-0.1
2,691,170	+		IAI47_12775	0.10	-0.0
2,691,171	-		IAI47_12775	0.10	-0.7
2,691,171	-		IAI47_12775	0.10	+1.7
2,691,171	-		IAI47_12775	0.10	+0.8
2,691,175	+		IAI47_12775	0.11	-0.7
2,691,175	+		IAI47_12775	0.11	+0.6
2,691,176	-		IAI47_12775	0.11	-0.6
2,691,176	-		IAI47_12775	0.11	+1.9
2,691,176	-		IAI47_12775	0.11	-1.3
2,691,197	-		IAI47_12775	0.15	+1.7
2,691,212	-		IAI47_12775	0.18	+1.0
2,691,238	-		IAI47_12775	0.22	-0.9
2,691,269	+		IAI47_12775	0.28	+0.8
2,691,269	+		IAI47_12775	0.28	-0.3
2,691,269	+		IAI47_12775	0.28	-0.9
2,691,269	+		IAI47_12775	0.28	+1.2
2,691,269	+		IAI47_12775	0.28	+0.8
2,691,269	+		IAI47_12775	0.28	+0.7
2,691,270	-		IAI47_12775	0.28	-0.1
2,691,270	-		IAI47_12775	0.28	+1.7
2,691,270	-		IAI47_12775	0.28	-2.6
2,691,270	-		IAI47_12775	0.28	+1.8
2,691,270	-		IAI47_12775	0.28	+0.9
2,691,270	-		IAI47_12775	0.28	+1.4
2,691,304	+		IAI47_12775	0.34	-0.2
2,691,304	+		IAI47_12775	0.34	-0.0
2,691,305	-		IAI47_12775	0.35	-2.3
2,691,305	-		IAI47_12775	0.35	-1.6
2,691,305	-		IAI47_12775	0.35	+1.5
2,691,305	-		IAI47_12775	0.35	+1.9
2,691,305	-		IAI47_12775	0.35	-0.5
2,691,305	-		IAI47_12775	0.35	+0.4
2,691,305	-		IAI47_12775	0.35	-1.1
2,691,333	-		IAI47_12775	0.40	+3.3
2,691,358	-		IAI47_12775	0.44	-0.2
2,691,363	+		IAI47_12775	0.45	-0.3
2,691,364	-		IAI47_12775	0.45	+0.5
2,691,364	-		IAI47_12775	0.45	+1.1
2,691,426	+		IAI47_12775	0.57	-1.3
2,691,426	+		IAI47_12775	0.57	+1.7
2,691,427	-		IAI47_12775	0.57	-1.0
2,691,438	-		IAI47_12775	0.59	+0.4
2,691,458	-		IAI47_12775	0.62	+0.3
2,691,482	+		IAI47_12775	0.67	-0.0
2,691,482	+		IAI47_12775	0.67	-0.3
2,691,483	-		IAI47_12775	0.67	+0.8
2,691,490	-		IAI47_12775	0.68	-0.6
2,691,490	-		IAI47_12775	0.68	+0.8
2,691,510	+		IAI47_12775	0.72	-1.4
2,691,511	-		IAI47_12775	0.72	-0.4
2,691,511	-		IAI47_12775	0.72	-0.8
2,691,534	+		IAI47_12775	0.76	+0.9
2,691,535	-		IAI47_12775	0.77	-2.0
2,691,535	-		IAI47_12775	0.77	+0.1
2,691,537	+		IAI47_12775	0.77	+0.2
2,691,537	+		IAI47_12775	0.77	-0.7
2,691,537	+		IAI47_12775	0.77	-0.0
2,691,537	+		IAI47_12775	0.77	+0.7
2,691,537	+		IAI47_12775	0.77	+0.7
2,691,537	+		IAI47_12775	0.77	-0.1
2,691,538	-		IAI47_12775	0.77	+1.2
2,691,538	-		IAI47_12775	0.77	-0.2
2,691,538	-		IAI47_12775	0.77	+0.1
2,691,547	+		IAI47_12775	0.79	+1.0
2,691,547	+		IAI47_12775	0.79	+0.1
2,691,547	+		IAI47_12775	0.79	+1.1
2,691,547	+		IAI47_12775	0.79	+0.9
2,691,564	+		IAI47_12775	0.82	-0.0
2,691,564	+		IAI47_12775	0.82	-0.4
2,691,564	+		IAI47_12775	0.82	+1.3
2,691,564	+		IAI47_12775	0.82	-0.3
2,691,564	+		IAI47_12775	0.82	+0.9
2,691,565	-		IAI47_12775	0.82	-0.7
2,691,565	-		IAI47_12775	0.82	+1.4
2,691,565	-		IAI47_12775	0.82	-0.9
2,691,595	+		IAI47_12775	0.87	+0.3
2,691,596	-		IAI47_12775	0.88	+0.8
2,691,618	+				+1.0
2,691,619	-				+1.0
2,691,631	+				+0.8
2,691,632	-				+1.8
2,691,632	-				-0.0
2,691,632	-				+0.7
2,691,632	-				-1.7
2,691,632	-				-1.0
2,691,654	+				-1.0
2,691,654	+				-0.0
2,691,654	+				+0.1
2,691,655	-				+0.5
2,691,655	-				-0.1
2,691,657	+				+0.8
2,691,657	+				+2.0
2,691,657	+				+0.7
2,691,657	+				-0.1
2,691,657	+				+0.4
2,691,657	+				-2.0
2,691,657	+				+0.2
2,691,658	-				+1.5
2,691,658	-				+2.2
2,691,665	+				-0.2
2,691,665	+				+0.2
2,691,665	+				+0.5
2,691,666	-				-1.8
2,691,666	-				+1.1
2,691,666	-				-0.6
2,691,666	-				-0.2
2,691,724	+				+0.2
2,691,725	-				-0.8
2,691,725	-				-1.0
2,691,803	-				-1.2
2,691,803	-				-0.5
2,691,803	-				+0.3
2,691,810	+				-1.4
2,691,810	+				-0.5
2,691,811	-				+1.0
2,691,830	-				+0.4
2,691,837	+				-1.0
2,691,850	+				+0.8
2,691,850	+				-0.4
2,691,850	+				-0.5
2,691,850	+				+1.3
2,691,859	-				-0.0
2,691,909	-				-0.4
2,691,910	+				+0.0
2,691,911	-				-1.7
2,691,911	-				+0.2
2,691,911	-				+1.9
2,691,911	-				-0.1
2,691,916	+				+0.1
2,691,920	+				+1.6
2,691,920	+				+3.1
2,691,921	-				+0.7
2,691,921	-				-0.6
2,691,921	-				+1.8
2,691,921	-				+2.6
2,691,965	+				-0.1
2,691,966	-				-2.7
2,691,970	+				+0.5
2,691,970	+				-0.3
2,691,970	+				-0.7
2,691,971	-				+0.4
2,691,971	-				+1.0
2,691,971	-				-1.3
2,691,973	+				+0.7
2,691,973	+				-0.9
2,691,973	+				+0.5
2,691,974	-				-1.3
2,691,974	-				+0.6
2,691,974	-				+0.6
2,691,974	-				+1.7
2,692,009	+				-0.6
2,692,009	+				-0.2
2,692,009	+				-0.2
2,692,009	+				-1.1
2,692,029	+				-0.0
2,692,030	-				-0.6
2,692,030	-				+0.9
2,692,044	-		IAI47_12780	0.11	+0.1
2,692,074	+		IAI47_12780	0.12	-0.7
2,692,075	-		IAI47_12780	0.12	-1.8
2,692,075	-		IAI47_12780	0.12	+0.1
2,692,077	+		IAI47_12780	0.13	+0.5
2,692,078	-		IAI47_12780	0.13	+0.2
2,692,100	+		IAI47_12780	0.14	-0.2
2,692,100	+		IAI47_12780	0.14	+0.9
2,692,100	+		IAI47_12780	0.14	+0.5
2,692,100	+		IAI47_12780	0.14	-1.0
2,692,101	-		IAI47_12780	0.14	+0.8
2,692,154	+		IAI47_12780	0.17	+0.4
2,692,154	+		IAI47_12780	0.17	+0.7
2,692,155	-		IAI47_12780	0.17	-1.4
2,692,177	+		IAI47_12780	0.18	+1.4
2,692,177	+		IAI47_12780	0.18	-1.3
2,692,177	+		IAI47_12780	0.18	+0.7
2,692,177	+		IAI47_12780	0.18	+0.8
2,692,178	-		IAI47_12780	0.18	+0.5
2,692,178	-		IAI47_12780	0.18	-0.0
2,692,178	-		IAI47_12780	0.18	+1.0
2,692,178	-		IAI47_12780	0.18	+0.2
2,692,199	+		IAI47_12780	0.19	-2.4
2,692,199	+		IAI47_12780	0.19	-0.1
2,692,200	-		IAI47_12780	0.19	+0.8
2,692,200	-		IAI47_12780	0.19	-0.6
2,692,202	+		IAI47_12780	0.19	+1.7
2,692,202	+		IAI47_12780	0.19	-0.7
2,692,202	+		IAI47_12780	0.19	-0.6
2,692,202	+		IAI47_12780	0.19	-1.0
2,692,203	-		IAI47_12780	0.20	+0.4
2,692,203	-		IAI47_12780	0.20	-0.3
2,692,208	+		IAI47_12780	0.20	+0.8
2,692,208	+		IAI47_12780	0.20	-1.6
2,692,209	-		IAI47_12780	0.20	-1.2
2,692,209	-		IAI47_12780	0.20	-0.1
2,692,210	+		IAI47_12780	0.20	+0.6
2,692,280	+		IAI47_12780	0.24	-1.0
2,692,280	+		IAI47_12780	0.24	-1.4
2,692,280	+		IAI47_12780	0.24	-0.9
2,692,281	-		IAI47_12780	0.24	+1.9
2,692,281	-		IAI47_12780	0.24	+0.2
2,692,281	-		IAI47_12780	0.24	+0.1
2,692,343	+		IAI47_12780	0.27	+0.1
2,692,343	+		IAI47_12780	0.27	+2.8
2,692,343	+		IAI47_12780	0.27	-0.3
2,692,344	-		IAI47_12780	0.27	+1.5
2,692,344	-		IAI47_12780	0.27	+1.1
2,692,345	+		IAI47_12780	0.27	-1.2
2,692,346	-		IAI47_12780	0.27	-0.5
2,692,346	-		IAI47_12780	0.27	+0.2
2,692,346	-		IAI47_12780	0.27	+1.2
2,692,357	+		IAI47_12780	0.28	+0.6
2,692,357	+		IAI47_12780	0.28	+0.5
2,692,357	+		IAI47_12780	0.28	-0.1
2,692,357	+		IAI47_12780	0.28	-0.8
2,692,357	+		IAI47_12780	0.28	-0.3
2,692,357	+		IAI47_12780	0.28	+0.6
2,692,357	+		IAI47_12780	0.28	-0.3
2,692,357	+		IAI47_12780	0.28	+0.6
2,692,358	-		IAI47_12780	0.28	-0.1
2,692,358	-		IAI47_12780	0.28	-0.3
2,692,358	-		IAI47_12780	0.28	+2.6
2,692,358	-		IAI47_12780	0.28	+0.6
2,692,358	-		IAI47_12780	0.28	-0.4
2,692,358	-		IAI47_12780	0.28	+0.5
2,692,363	+		IAI47_12780	0.28	-0.7
2,692,363	+		IAI47_12780	0.28	+0.5
2,692,364	-		IAI47_12780	0.28	+2.0
2,692,364	-		IAI47_12780	0.28	-0.0
2,692,364	-		IAI47_12780	0.28	+0.8
2,692,364	-		IAI47_12780	0.28	+0.4
2,692,364	-		IAI47_12780	0.28	+0.6
2,692,364	-		IAI47_12780	0.28	-0.5
2,692,391	+		IAI47_12780	0.30	-1.0
2,692,392	-		IAI47_12780	0.30	+1.0
2,692,392	-		IAI47_12780	0.30	+1.0
2,692,392	-		IAI47_12780	0.30	-0.5
2,692,394	+		IAI47_12780	0.30	+0.4
2,692,395	-		IAI47_12780	0.30	-1.6
2,692,448	+		IAI47_12780	0.33	-0.2
2,692,448	+		IAI47_12780	0.33	-1.1
2,692,448	+		IAI47_12780	0.33	+3.1
2,692,448	+		IAI47_12780	0.33	-1.2
2,692,448	+		IAI47_12780	0.33	-1.4
2,692,449	-		IAI47_12780	0.33	-0.0
2,692,449	-		IAI47_12780	0.33	-0.0
2,692,520	+		IAI47_12780	0.37	-1.5
2,692,520	+		IAI47_12780	0.37	-0.2
2,692,521	-		IAI47_12780	0.37	+1.0
2,692,521	-		IAI47_12780	0.37	+0.8
2,692,534	-		IAI47_12780	0.38	-0.6
2,692,537	+		IAI47_12780	0.38	-0.9
2,692,538	-		IAI47_12780	0.38	+0.6
2,692,549	+		IAI47_12780	0.39	-0.9
2,692,549	+		IAI47_12780	0.39	+0.5
2,692,550	-		IAI47_12780	0.39	+0.1
2,692,550	-		IAI47_12780	0.39	-1.7
2,692,550	-		IAI47_12780	0.39	-0.2
2,692,583	+		IAI47_12780	0.41	+0.4
2,692,584	-		IAI47_12780	0.41	-0.8
2,692,656	-		IAI47_12780	0.45	+0.9
2,692,656	-		IAI47_12780	0.45	-0.9
2,692,750	+		IAI47_12780	0.50	-0.0
2,692,750	+		IAI47_12780	0.50	+0.6
2,692,750	+		IAI47_12780	0.50	-0.7
2,692,750	+		IAI47_12780	0.50	+1.3
2,692,750	+		IAI47_12780	0.50	-1.0
2,692,751	-		IAI47_12780	0.50	+1.1
2,692,751	-		IAI47_12780	0.50	+1.0
2,692,751	-		IAI47_12780	0.50	-1.6
2,692,751	-		IAI47_12780	0.50	-0.7
2,692,754	+		IAI47_12780	0.50	-1.3
2,692,754	+		IAI47_12780	0.50	+1.1
2,692,754	+		IAI47_12780	0.50	-0.8
2,692,754	+		IAI47_12780	0.50	+2.5
2,692,755	-		IAI47_12780	0.50	-0.3
2,692,755	-		IAI47_12780	0.50	+2.4
2,692,755	-		IAI47_12780	0.50	+0.8
2,692,755	-		IAI47_12780	0.50	+1.8
2,692,763	+		IAI47_12780	0.50	+0.2
2,692,763	+		IAI47_12780	0.50	-1.9
2,692,764	-		IAI47_12780	0.50	-0.4
2,692,788	+		IAI47_12780	0.52	+1.3
2,692,788	+		IAI47_12780	0.52	+1.2
2,692,788	+		IAI47_12780	0.52	-1.3
2,692,788	+		IAI47_12780	0.52	-0.2
2,692,788	+		IAI47_12780	0.52	+0.5
2,692,789	-		IAI47_12780	0.52	+1.4
2,692,789	-		IAI47_12780	0.52	+0.3
2,692,789	-		IAI47_12780	0.52	+0.8
2,692,789	-		IAI47_12780	0.52	-2.2
2,692,789	-		IAI47_12780	0.52	+2.1
2,692,789	-		IAI47_12780	0.52	+0.2
2,692,899	+		IAI47_12780	0.58	+0.7
2,693,051	+		IAI47_12780	0.66	-0.9
2,693,051	+		IAI47_12780	0.66	+0.7
2,693,086	+		IAI47_12780	0.68	+3.2
2,693,086	+		IAI47_12780	0.68	+0.1
2,693,106	+		IAI47_12780	0.69	+1.6
2,693,106	+		IAI47_12780	0.69	+1.4
2,693,107	-		IAI47_12780	0.69	-0.3
2,693,107	-		IAI47_12780	0.69	+0.2
2,693,117	+		IAI47_12780	0.70	+2.0
2,693,117	+		IAI47_12780	0.70	+0.4
2,693,118	-		IAI47_12780	0.70	+0.8
2,693,118	-		IAI47_12780	0.70	-0.0
2,693,118	-		IAI47_12780	0.70	-0.8
2,693,118	-		IAI47_12780	0.70	-1.6
2,693,194	+		IAI47_12780	0.74	-1.2
2,693,194	+		IAI47_12780	0.74	-0.5
2,693,194	+		IAI47_12780	0.74	-0.7
2,693,209	+		IAI47_12780	0.75	+0.6
2,693,210	-		IAI47_12780	0.75	-1.1
2,693,210	-		IAI47_12780	0.75	-0.4
2,693,258	-		IAI47_12780	0.78	+1.5
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2,693,738	-				-2.4
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2,693,786	+				+2.5
2,693,809	+				+1.6
2,693,838	+				-1.1