Strain Fitness in Pantoea sp. MT58 around IAI47_08595

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,814,053	-		IAI47_08585	0.37	-1.1
1,814,062	+		IAI47_08585	0.39	-1.6
1,814,063	-		IAI47_08585	0.39	+1.1
1,814,070	+		IAI47_08585	0.41	-0.3
1,814,118	-		IAI47_08585	0.51	-0.7
1,814,118	-		IAI47_08585	0.51	+2.5
1,814,118	-		IAI47_08585	0.51	-2.2
1,814,129	+		IAI47_08585	0.54	-1.9
1,814,129	+		IAI47_08585	0.54	-2.6
1,814,129	+		IAI47_08585	0.54	+1.3
1,814,129	+		IAI47_08585	0.54	-1.5
1,814,129	+		IAI47_08585	0.54	+0.3
1,814,137	-		IAI47_08585	0.56	+1.0
1,814,156	-		IAI47_08585	0.60	+0.3
1,814,156	-		IAI47_08585	0.60	-2.3
1,814,178	+		IAI47_08585	0.64	+0.6
1,814,178	+		IAI47_08585	0.64	-0.3
1,814,178	+		IAI47_08585	0.64	+1.5
1,814,178	+		IAI47_08585	0.64	-1.2
1,814,179	-		IAI47_08585	0.65	-0.7
1,814,179	-		IAI47_08585	0.65	-0.1
1,814,179	-		IAI47_08585	0.65	+0.3
1,814,203	+		IAI47_08585	0.70	+0.4
1,814,203	+		IAI47_08585	0.70	-0.3
1,814,204	-		IAI47_08585	0.70	-1.4
1,814,204	-		IAI47_08585	0.70	-0.1
1,814,204	-		IAI47_08585	0.70	-0.9
1,814,204	-		IAI47_08585	0.70	-0.9
1,814,204	-		IAI47_08585	0.70	-1.0
1,814,209	+		IAI47_08585	0.71	-0.6
1,814,209	+		IAI47_08585	0.71	-2.6
1,814,209	+		IAI47_08585	0.71	-0.2
1,814,209	+		IAI47_08585	0.71	+0.4
1,814,209	+		IAI47_08585	0.71	-1.3
1,814,209	+		IAI47_08585	0.71	+0.5
1,814,209	+		IAI47_08585	0.71	-0.3
1,814,209	+		IAI47_08585	0.71	+0.4
1,814,210	-		IAI47_08585	0.71	-0.2
1,814,210	-		IAI47_08585	0.71	-1.7
1,814,210	-		IAI47_08585	0.71	-0.4
1,814,214	+		IAI47_08585	0.72	-2.0
1,814,215	-		IAI47_08585	0.73	-0.7
1,814,215	-		IAI47_08585	0.73	-0.8
1,814,230	-		IAI47_08585	0.76	-0.7
1,814,230	-		IAI47_08585	0.76	+1.0
1,814,256	+		IAI47_08585	0.81	-1.6
1,814,268	-		IAI47_08585	0.84	+0.6
1,814,303	+				+0.1
1,814,303	+				+0.6
1,814,304	-				+0.6
1,814,304	-				-0.9
1,814,304	-				+0.5
1,814,304	-				+1.4
1,814,304	-				+3.3
1,814,310	-				-0.5
1,814,310	-				+0.8
1,814,310	-				-0.3
1,814,334	+				-1.2
1,814,334	+				+1.9
1,814,334	+				-1.3
1,814,334	+				-1.2
1,814,334	+				-0.3
1,814,334	+				+0.9
1,814,334	+				+1.2
1,814,335	-				-2.4
1,814,335	-				-0.2
1,814,335	-				+2.3
1,814,335	-				+0.8
1,814,340	+				+1.8
1,814,341	-				+1.9
1,814,341	-				-0.3
1,814,343	+				-0.7
1,814,343	+				+0.7
1,814,344	-				+0.1
1,814,344	-				-2.8
1,814,344	-				+1.1
1,814,351	+				+1.3
1,814,351	+				+1.3
1,814,351	+				-0.9
1,814,352	-				-0.7
1,814,352	-				-0.0
1,814,380	+				+0.3
1,814,385	+				+0.2
1,814,385	+				-1.3
1,814,386	-				-0.7
1,814,406	+				+0.5
1,814,406	+				-1.4
1,814,406	+				+0.7
1,814,407	-				-0.9
1,814,407	-				-0.1
1,814,526	+				+1.0
1,814,527	-				+0.7
1,814,545	+				-0.2
1,814,546	-				-0.8
1,814,546	-				-0.2
1,814,546	-				+0.8
1,814,569	+				+0.3
1,814,569	+				-0.0
1,814,569	+				+1.1
1,814,569	+				+2.3
1,814,569	+				-0.9
1,814,569	+				-0.2
1,814,569	+				-0.6
1,814,570	-				+0.4
1,814,570	-				+0.3
1,814,570	-				+0.2
1,814,570	-				+0.7
1,814,570	-				+3.0
1,814,570	-				-1.6
1,814,573	+				-0.7
1,814,597	+				-1.3
1,814,598	-				+1.3
1,814,598	-				+0.0
1,814,627	+				-1.3
1,814,664	+				+1.7
1,814,665	-				-0.3
1,814,675	+				-0.8
1,814,675	+				-0.7
1,814,675	+				-1.4
1,814,676	-				+0.8
1,814,676	-				+0.4
1,814,676	-				-0.1
1,814,676	-				-1.1
1,814,676	-				+0.5
1,814,708	+				-0.6
1,814,709	-				-1.4
1,814,709	-				+0.0
1,814,709	-				-0.1
1,814,709	-				+0.7
1,814,719	-				-3.4
1,814,743	+				+1.8
1,814,743	+				+0.5
1,814,744	-				-1.1
1,814,744	-				+1.3
1,814,762	+				-2.0
1,814,763	-				-0.5
1,814,763	-				-1.3
1,814,763	-				-1.0
1,814,763	-				+2.3
1,814,766	+		IAI47_08590	0.11	-1.4
1,814,766	+		IAI47_08590	0.11	-1.3
1,814,833	+		IAI47_08590	0.49	-1.9
1,814,834	-		IAI47_08590	0.50	+0.5
1,814,866	+		IAI47_08590	0.68	+1.3
1,814,867	-		IAI47_08590	0.68	+0.6
1,814,906	-				+0.7
1,814,911	-				+1.1
1,814,911	-				-0.4
1,814,914	+				+0.1
1,814,914	+				+0.0
1,814,915	-				-2.0
1,814,931	+				+1.2
1,814,932	-				-0.9
1,814,932	-				-0.6
1,814,941	+				+0.5
1,814,941	+				-1.9
1,814,942	-				-1.9
1,814,942	-				+0.0
1,814,957	+				+2.3
1,814,962	-				-0.6
1,814,983	+				-0.7
1,814,983	+				-0.2
1,814,984	-				-0.1
1,814,984	-				+1.6
1,814,984	-				-1.4
1,814,992	-				-0.1
1,814,992	-				-0.7
1,815,013	+				+0.1
1,815,031	-				+0.2
1,815,047	+				+2.3
1,815,047	+				+0.3
1,815,047	+				+0.5
1,815,047	+				-1.1
1,815,047	+				-0.6
1,815,047	+				+0.8
1,815,047	+				-0.1
1,815,047	+				+0.7
1,815,047	+				+0.7
1,815,047	+				-0.9
1,815,048	-				+1.4
1,815,048	-				+1.2
1,815,048	-				-0.3
1,815,048	-				+0.3
1,815,048	-				+1.6
1,815,048	-				-0.2
1,815,083	+				-0.1
1,815,083	+				+0.1
1,815,084	-				+1.9
1,815,099	-				-0.4
1,815,110	-				-0.6
1,815,110	-				+1.1
1,815,110	-				+0.3
1,815,121	-				-0.5
1,815,121	-				+2.3
1,815,121	-				+1.3
1,815,121	-				+0.3
1,815,209	+				-0.7
1,815,210	-				+1.0
1,815,210	-				+0.2
1,815,279	+		IAI47_08595	0.11	+0.5
1,815,279	+		IAI47_08595	0.11	+0.4
1,815,279	+		IAI47_08595	0.11	+1.5
1,815,279	+		IAI47_08595	0.11	+1.0
1,815,280	-		IAI47_08595	0.11	-0.1
1,815,280	-		IAI47_08595	0.11	-0.8
1,815,280	-		IAI47_08595	0.11	+0.1
1,815,280	-		IAI47_08595	0.11	+0.3
1,815,321	-		IAI47_08595	0.13	+0.6
1,815,340	+		IAI47_08595	0.14	-0.7
1,815,341	-		IAI47_08595	0.14	+0.7
1,815,355	+		IAI47_08595	0.14	+1.9
1,815,356	-		IAI47_08595	0.15	+1.5
1,815,356	-		IAI47_08595	0.15	-0.3
1,815,356	-		IAI47_08595	0.15	+3.0
1,815,358	+		IAI47_08595	0.15	-0.1
1,815,359	-		IAI47_08595	0.15	-0.1
1,815,359	-		IAI47_08595	0.15	-1.7
1,815,359	-		IAI47_08595	0.15	-0.7
1,815,359	-		IAI47_08595	0.15	-0.3
1,815,403	+		IAI47_08595	0.17	-0.2
1,815,404	-		IAI47_08595	0.17	-0.1
1,815,409	+		IAI47_08595	0.17	-0.7
1,815,409	+		IAI47_08595	0.17	-1.2
1,815,410	-		IAI47_08595	0.17	-0.2
1,815,517	+		IAI47_08595	0.22	-0.2
1,815,518	-		IAI47_08595	0.22	-0.4
1,815,518	-		IAI47_08595	0.22	+1.8
1,815,541	-		IAI47_08595	0.23	+0.3
1,815,541	-		IAI47_08595	0.23	-1.5
1,815,554	-		IAI47_08595	0.23	+0.0
1,815,574	-		IAI47_08595	0.24	-1.4
1,815,574	-		IAI47_08595	0.24	-0.9
1,815,600	+		IAI47_08595	0.25	-0.6
1,815,655	+		IAI47_08595	0.28	+0.7
1,815,660	+		IAI47_08595	0.28	+1.9
1,815,661	-		IAI47_08595	0.28	-0.9
1,815,887	+		IAI47_08595	0.38	+0.9
1,815,888	-		IAI47_08595	0.38	+1.3
1,815,918	+		IAI47_08595	0.40	-0.1
1,815,919	-		IAI47_08595	0.40	-1.2
1,815,919	-		IAI47_08595	0.40	-1.6
1,815,919	-		IAI47_08595	0.40	-0.0
1,815,919	-		IAI47_08595	0.40	+0.2
1,815,919	-		IAI47_08595	0.40	+0.1
1,815,919	-		IAI47_08595	0.40	-1.2
1,815,923	-		IAI47_08595	0.40	-0.6
1,815,923	-		IAI47_08595	0.40	+0.4
1,815,923	-		IAI47_08595	0.40	+0.4
1,815,923	-		IAI47_08595	0.40	-0.6
1,815,923	-		IAI47_08595	0.40	+0.2
1,815,931	-		IAI47_08595	0.40	+0.3
1,816,033	-		IAI47_08595	0.45	+0.0
1,816,042	+		IAI47_08595	0.45	-0.1
1,816,078	+		IAI47_08595	0.47	+0.3
1,816,078	+		IAI47_08595	0.47	-1.2
1,816,078	+		IAI47_08595	0.47	-0.9
1,816,079	-		IAI47_08595	0.47	-1.8
1,816,079	-		IAI47_08595	0.47	+0.6
1,816,079	-		IAI47_08595	0.47	+1.3
1,816,200	+		IAI47_08595	0.52	+0.5
1,816,200	+		IAI47_08595	0.52	+0.3
1,816,200	+		IAI47_08595	0.52	-1.8
1,816,201	-		IAI47_08595	0.52	+0.0
1,816,296	+		IAI47_08595	0.57	+1.3
1,816,401	+		IAI47_08595	0.61	-2.3
1,816,402	-		IAI47_08595	0.61	-0.5
1,816,402	-		IAI47_08595	0.61	+0.3
1,816,421	-		IAI47_08595	0.62	-1.3
1,816,518	+		IAI47_08595	0.67	+2.3
1,816,525	+		IAI47_08595	0.67	+1.0
1,816,526	-		IAI47_08595	0.67	-2.1
1,816,526	-		IAI47_08595	0.67	-1.4
1,816,543	+		IAI47_08595	0.68	+0.1
1,816,544	-		IAI47_08595	0.68	-1.2
1,816,624	+		IAI47_08595	0.71	+2.7
1,816,624	+		IAI47_08595	0.71	+0.5
1,816,624	+		IAI47_08595	0.71	-0.1
1,816,624	+		IAI47_08595	0.71	+1.3
1,816,625	-		IAI47_08595	0.71	-0.3
1,816,625	-		IAI47_08595	0.71	-0.4
1,816,625	-		IAI47_08595	0.71	+0.1
1,816,678	+		IAI47_08595	0.74	+1.4
1,816,679	-		IAI47_08595	0.74	-0.7
1,816,685	+		IAI47_08595	0.74	-0.9
1,816,734	+		IAI47_08595	0.76	-1.9
1,816,749	+		IAI47_08595	0.77	-2.1
1,816,749	+		IAI47_08595	0.77	+0.7
1,816,749	+		IAI47_08595	0.77	-0.4
1,816,749	+		IAI47_08595	0.77	+0.5
1,816,750	-		IAI47_08595	0.77	-1.0
1,816,750	-		IAI47_08595	0.77	-0.6
1,816,753	+		IAI47_08595	0.77	-2.4
1,816,754	-		IAI47_08595	0.77	+0.4
1,816,754	-		IAI47_08595	0.77	-0.3
1,816,755	+		IAI47_08595	0.77	+2.8
1,816,755	+		IAI47_08595	0.77	-0.8
1,816,755	+		IAI47_08595	0.77	-1.7
1,816,756	+		IAI47_08595	0.77	-1.4
1,816,756	-		IAI47_08595	0.77	-0.6
1,816,790	+		IAI47_08595	0.79	-0.4
1,816,813	+		IAI47_08595	0.80	-1.3
1,816,814	-		IAI47_08595	0.80	-0.6
1,816,814	-				+0.3
1,816,814	-		IAI47_08595	0.80	+0.8
1,816,814	-		IAI47_08595	0.80	+0.2
1,816,817	+		IAI47_08595	0.80	-2.1
1,816,817	+		IAI47_08595	0.80	+0.5
1,816,817	+		IAI47_08595	0.80	-0.2
1,816,817	+		IAI47_08595	0.80	-0.3
1,816,817	+		IAI47_08595	0.80	+0.6
1,816,817	+		IAI47_08595	0.80	-1.3
1,816,817	+		IAI47_08595	0.80	+0.6
1,816,817	+		IAI47_08595	0.80	+0.4
1,816,818	-		IAI47_08595	0.80	-0.2
1,816,818	-		IAI47_08595	0.80	+0.7
1,816,818	-		IAI47_08595	0.80	+0.1
1,816,907	+		IAI47_08595	0.84	-1.1
1,816,907	+		IAI47_08595	0.84	+0.2
1,816,907	+		IAI47_08595	0.84	-0.4
1,816,907	+		IAI47_08595	0.84	+0.6
1,816,907	+		IAI47_08595	0.84	-0.7
1,816,908	-		IAI47_08595	0.84	-1.2
1,816,910	-		IAI47_08595	0.84	-0.2
1,816,952	+		IAI47_08595	0.86	+1.7
1,816,952	+		IAI47_08595	0.86	+0.7
1,816,952	+		IAI47_08595	0.86	+0.9
1,816,952	+		IAI47_08595	0.86	-0.4
1,816,952	+		IAI47_08595	0.86	+1.1
1,816,952	+		IAI47_08595	0.86	-0.3
1,816,953	-		IAI47_08595	0.86	-0.9
1,817,039	+				-1.1
1,817,039	+				+1.7
1,817,040	-				-0.7
1,817,040	-				+0.7
1,817,043	+				+1.5
1,817,043	+				-1.0
1,817,043	+				+0.6
1,817,044	-				-0.7
1,817,044	-				-1.2
1,817,086	+				+1.4
1,817,111	+				+0.3
1,817,111	+				-0.6
1,817,111	+				-0.3
1,817,112	-				-1.1
1,817,112	-				-0.1
1,817,112	-				-1.6
1,817,135	+				+0.4
1,817,135	+				+2.3
1,817,136	-				-0.6
1,817,153	+				+0.3
1,817,154	-				+0.9
1,817,193	+				+0.1
1,817,193	+				+0.7
1,817,193	+				-0.4
1,817,193	+				-0.4
1,817,193	+				+0.5
1,817,194	-				-0.1
1,817,194	-				-2.7
1,817,283	+		IAI47_08600	0.13	+1.9
1,817,284	-		IAI47_08600	0.14	+1.8
1,817,326	+		IAI47_08600	0.38	-0.0
1,817,336	+		IAI47_08600	0.44	-0.6
1,817,337	-		IAI47_08600	0.44	+1.6
1,817,337	-		IAI47_08600	0.44	+0.1
1,817,337	-		IAI47_08600	0.44	-0.9
1,817,395	+		IAI47_08600	0.78	-0.6
1,817,395	+		IAI47_08600	0.78	+2.7
1,817,396	-		IAI47_08600	0.78	-0.3
1,817,397	+		IAI47_08600	0.79	-0.8
1,817,397	+		IAI47_08600	0.79	+3.0
1,817,397	+		IAI47_08600	0.79	+0.0
1,817,397	+		IAI47_08600	0.79	+1.0
1,817,397	+		IAI47_08600	0.79	+1.3
1,817,398	-		IAI47_08600	0.79	-0.7
1,817,398	-		IAI47_08600	0.79	-0.1
1,817,419	+				+0.3
1,817,420	-				+0.1
1,817,445	+				-0.6
1,817,445	+				+0.4
1,817,445	+				+0.4
1,817,445	+				-0.4
1,817,446	-				+1.2
1,817,446	-				-1.8
1,817,446	-				-1.6
1,817,446	-				-0.4
1,817,450	-				+1.3
1,817,467	+				+2.1
1,817,521	+				-0.4
1,817,521	+				+1.6
1,817,521	+				+0.2
1,817,521	+				+0.3
1,817,522	-				+0.8
1,817,544	+				+0.5
1,817,544	+				+0.5
1,817,545	-				-0.4
1,817,570	-				+0.0
1,817,570	-				+0.9
1,817,639	+				-0.1
1,817,639	+				+0.8
1,817,640	-				-1.4
1,817,641	+				+2.1
1,817,700	+				-1.4
1,817,701	-				+0.3
1,817,701	-				-0.3
1,817,727	+				+0.2
1,817,728	-				-0.1
1,817,850	+		IAI47_08605	0.18	-1.3
1,817,986	-		IAI47_08605	0.49	-1.2
1,817,986	-		IAI47_08605	0.49	+0.6
1,817,989	-		IAI47_08605	0.50	-0.2
1,817,989	-		IAI47_08605	0.50	+3.8
1,818,012	+		IAI47_08605	0.55	+1.9
1,818,017	-		IAI47_08605	0.56	-0.8
1,818,047	+		IAI47_08605	0.63	+2.8
1,818,066	+		IAI47_08605	0.67	+0.6
1,818,078	-		IAI47_08605	0.70	-0.9
1,818,157	+		IAI47_08605	0.88	-2.0
1,818,158	-		IAI47_08605	0.88	-0.1