Strain Fitness in Pantoea sp. MT58 around IAI47_07665

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,623,776	+		IAI47_07660	0.56	+1.8
1,623,780	+		IAI47_07660	0.57	-0.9
1,623,860	+		IAI47_07660	0.61	-2.3
1,624,015	+		IAI47_07660	0.69	+0.4
1,624,134	+		IAI47_07660	0.75	-1.2
1,624,134	+		IAI47_07660	0.75	+0.4
1,624,134	+		IAI47_07660	0.75	-0.6
1,624,134	+		IAI47_07660	0.75	+0.4
1,624,135	-		IAI47_07660	0.75	+1.5
1,624,135	-		IAI47_07660	0.75	+1.8
1,624,135	-		IAI47_07660	0.75	+1.1
1,624,135	-		IAI47_07660	0.75	-2.4
1,624,139	-		IAI47_07660	0.75	-0.1
1,624,163	+		IAI47_07660	0.76	-0.8
1,624,186	+		IAI47_07660	0.77	-1.2
1,624,186	+		IAI47_07660	0.77	-0.0
1,624,186	+		IAI47_07660	0.77	+2.3
1,624,186	+		IAI47_07660	0.77	+0.3
1,624,186	+		IAI47_07660	0.77	+2.3
1,624,187	-		IAI47_07660	0.77	-0.8
1,624,187	-		IAI47_07660	0.77	-0.2
1,624,187	-		IAI47_07660	0.77	-0.8
1,624,187	-		IAI47_07660	0.77	+1.2
1,624,187	-		IAI47_07660	0.77	+0.7
1,624,299	+		IAI47_07660	0.83	+0.2
1,624,299	+		IAI47_07660	0.83	+0.0
1,624,329	+		IAI47_07660	0.85	+1.1
1,624,330	-		IAI47_07660	0.85	-0.8
1,624,330	-		IAI47_07660	0.85	-1.5
1,624,336	+		IAI47_07660	0.85	-0.0
1,624,336	+		IAI47_07660	0.85	-1.0
1,624,336	+		IAI47_07660	0.85	-1.2
1,624,337	-		IAI47_07660	0.85	+1.5
1,624,337	-		IAI47_07660	0.85	+0.5
1,624,558	+				-0.6
1,624,586	-				+0.1
1,624,586	-				+0.5
1,624,654	-				+0.9
1,624,654	-				-2.4
1,624,654	-				-0.7
1,624,654	-				+0.7
1,624,661	-				+0.3
1,624,675	+				-0.6
1,624,675	+				+2.1
1,624,676	-				+2.8
1,624,676	-				+0.9
1,624,676	-				-1.2
1,624,676	-				-1.6
1,624,756	+				+0.3
1,624,756	+				+1.6
1,624,756	+				+0.9
1,624,756	+				-0.7
1,624,757	-				-0.2
1,624,757	-				+0.5
1,624,757	-				-0.2
1,624,757	-				-0.0
1,624,757	-				-1.7
1,624,757	-				+0.4
1,624,757	-				+0.3
1,624,757	-				-0.3
1,624,757	-				-0.4
1,624,757	-				+0.3
1,624,757	-				-1.6
1,624,757	-				+0.9
1,624,757	-				-1.3
1,624,757	-				+0.4
1,624,757	-				-0.0
1,624,757	-				+0.2
1,624,757	-				-0.8
1,624,798	-				-0.9
1,624,869	+				-0.1
1,624,869	+				-2.2
1,624,869	+				+2.3
1,624,870	-				-1.8
1,624,870	-				-0.5
1,624,893	+		IAI47_07665	0.11	-1.2
1,624,893	+		IAI47_07665	0.11	-0.4
1,624,893	+		IAI47_07665	0.11	+1.0
1,624,894	-		IAI47_07665	0.11	-1.4
1,624,960	+		IAI47_07665	0.15	-0.0
1,624,960	+		IAI47_07665	0.15	+0.7
1,624,960	+		IAI47_07665	0.15	-1.1
1,624,961	-		IAI47_07665	0.15	-2.0
1,625,035	+		IAI47_07665	0.19	+0.5
1,625,079	+		IAI47_07665	0.22	-1.8
1,625,079	+		IAI47_07665	0.22	-0.3
1,625,079	+		IAI47_07665	0.22	+0.3
1,625,190	+		IAI47_07665	0.28	-0.0
1,625,191	-		IAI47_07665	0.28	+0.3
1,625,191	-		IAI47_07665	0.28	+1.5
1,625,191	-		IAI47_07665	0.28	-0.0
1,625,255	-		IAI47_07665	0.32	-0.6
1,625,278	+		IAI47_07665	0.33	+0.5
1,625,313	+		IAI47_07665	0.35	+1.8
1,625,314	-		IAI47_07665	0.35	+0.4
1,625,409	-		IAI47_07665	0.40	+0.9
1,625,409	-		IAI47_07665	0.40	+1.3
1,625,505	-		IAI47_07665	0.46	-0.6
1,625,597	+		IAI47_07665	0.51	-0.5
1,625,597	+		IAI47_07665	0.51	-0.9
1,625,597	+		IAI47_07665	0.51	+0.9
1,625,597	+		IAI47_07665	0.51	-0.0
1,625,598	-		IAI47_07665	0.51	+0.2
1,625,598	-		IAI47_07665	0.51	+0.3
1,625,700	+		IAI47_07665	0.57	-0.4
1,625,700	+		IAI47_07665	0.57	+2.3
1,625,701	-		IAI47_07665	0.57	-1.2
1,625,701	-		IAI47_07665	0.57	+4.9
1,625,701	-		IAI47_07665	0.57	-0.0
1,625,701	-		IAI47_07665	0.57	-1.2
1,625,701	-		IAI47_07665	0.57	-0.2
1,625,727	+		IAI47_07665	0.58	+0.7
1,625,741	+		IAI47_07665	0.59	+1.3
1,625,742	-		IAI47_07665	0.59	-0.0
1,625,742	-		IAI47_07665	0.59	-0.2
1,625,834	+		IAI47_07665	0.64	-0.0
1,625,946	+		IAI47_07665	0.70	+1.1
1,625,946	+		IAI47_07665	0.70	+0.5
1,626,063	+		IAI47_07665	0.77	-0.3
1,626,063	+		IAI47_07665	0.77	+0.5
1,626,064	-		IAI47_07665	0.77	+0.1
1,626,064	-		IAI47_07665	0.77	-0.2
1,626,073	+		IAI47_07665	0.77	-1.6
1,626,074	-		IAI47_07665	0.77	-1.7
1,626,169	-		IAI47_07665	0.83	+0.9
1,626,212	-		IAI47_07665	0.85	+1.6
1,626,314	+				-0.7
1,626,317	+				+1.7
1,626,317	+				-0.9
1,626,318	-				+1.0
1,626,318	-				+0.7
1,626,318	-				-2.4
1,626,318	-				-2.3
1,626,463	-				+0.1
1,626,463	-				+0.4
1,626,472	+				-1.3
1,626,479	+				+0.5
1,626,479	+				+2.1
1,626,480	-				-0.4
1,626,509	+				+1.7
1,626,510	-				-0.3
1,626,510	-				+0.3
1,626,538	+				+0.5
1,626,538	+				-1.4
1,626,538	+				+0.9
1,626,539	-				+0.1
1,626,539	-				+0.5
1,626,539	-				+2.8
1,626,572	+				+0.8
1,626,572	+				+0.3
1,626,572	+				-2.0
1,626,573	-				-0.5
1,626,573	-				+1.1
1,626,573	-				-0.3
1,626,573	-				+1.7
1,626,601	+				+3.7
1,626,665	+		IAI47_07670	0.11	-0.9
1,626,665	+		IAI47_07670	0.11	+2.3
1,626,666	-		IAI47_07670	0.11	-0.6
1,626,666	-		IAI47_07670	0.11	-0.3
1,626,689	+		IAI47_07670	0.14	+0.1
1,626,767	+		IAI47_07670	0.23	-0.9
1,626,768	-		IAI47_07670	0.23	-0.7
1,626,768	-		IAI47_07670	0.23	-0.2
1,626,768	-		IAI47_07670	0.23	-0.1
1,626,824	-		IAI47_07670	0.30	+2.7
1,626,838	-		IAI47_07670	0.31	+1.4
1,626,980	+		IAI47_07670	0.48	+0.6
1,626,980	+		IAI47_07670	0.48	+0.1
1,626,981	-		IAI47_07670	0.48	+0.5
1,626,981	-		IAI47_07670	0.48	+2.3
1,626,981	-		IAI47_07670	0.48	-0.6
1,626,981	-		IAI47_07670	0.48	-1.8
1,626,981	-		IAI47_07670	0.48	+1.1
1,627,020	+		IAI47_07670	0.53	+0.7
1,627,020	+		IAI47_07670	0.53	-0.7
1,627,023	+		IAI47_07670	0.53	+1.8
1,627,023	+		IAI47_07670	0.53	-0.6
1,627,024	-		IAI47_07670	0.53	+2.1
1,627,024	-		IAI47_07670	0.53	-0.7
1,627,179	+		IAI47_07670	0.72	-0.0
1,627,179	+		IAI47_07670	0.72	+0.7
1,627,179	+		IAI47_07670	0.72	-1.7
1,627,179	+		IAI47_07670	0.72	-0.9
1,627,180	-		IAI47_07670	0.72	+1.2
1,627,221	+		IAI47_07670	0.77	+0.7
1,627,274	+		IAI47_07670	0.83	-2.9
1,627,275	-		IAI47_07670	0.83	-0.4
1,627,275	-		IAI47_07670	0.83	-0.8
1,627,275	-		IAI47_07670	0.83	+0.2
1,627,343	+				-1.7
1,627,343	+				-0.3
1,627,343	+				+2.3
1,627,343	+				-0.3
1,627,343	+				+1.4
1,627,344	-				+0.8
1,627,344	-				-1.6
1,627,344	-				+1.9
1,627,369	+				-0.9
1,627,369	+				-1.2
1,627,370	-				+1.0
1,627,370	-				-0.4
1,627,370	-				+0.4
1,627,413	+				-0.9
1,627,413	+				+0.9
1,627,414	-				+0.6
1,627,414	-				+3.0
1,627,414	-				+1.0
1,627,414	-				+2.0
1,627,463	+				+0.8
1,627,464	-				+1.5
1,627,466	+				+2.3
1,627,466	+				-0.8
1,627,466	+				+0.4
1,627,467	-				+0.9