Strain Fitness in Pantoea sp. MT58 around IAI47_06000

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,224,876	+		IAI47_05995	0.13	-0.9
1,224,876	+		IAI47_05995	0.13	-0.4
1,224,876	+		IAI47_05995	0.13	+0.6
1,224,891	+		IAI47_05995	0.15	-0.8
1,224,891	+		IAI47_05995	0.15	+2.8
1,224,891	+		IAI47_05995	0.15	-0.7
1,224,987	+		IAI47_05995	0.24	-1.7
1,224,987	+		IAI47_05995	0.24	-1.7
1,224,987	+		IAI47_05995	0.24	+0.0
1,224,996	+		IAI47_05995	0.25	+0.6
1,224,996	+		IAI47_05995	0.25	-1.7
1,224,996	+		IAI47_05995	0.25	-1.7
1,224,996	+		IAI47_05995	0.25	-1.0
1,224,996	+		IAI47_05995	0.25	-0.7
1,224,996	+		IAI47_05995	0.25	-0.1
1,224,996	+		IAI47_05995	0.25	-1.9
1,224,997	-		IAI47_05995	0.25	-0.7
1,224,997	-		IAI47_05995	0.25	-0.7
1,224,997	-		IAI47_05995	0.25	+0.1
1,225,008	+		IAI47_05995	0.26	+0.4
1,225,008	+		IAI47_05995	0.26	-0.0
1,225,009	-		IAI47_05995	0.26	+3.0
1,225,009	-		IAI47_05995	0.26	+0.3
1,225,009	-		IAI47_05995	0.26	+1.0
1,225,009	-		IAI47_05995	0.26	-1.4
1,225,009	-		IAI47_05995	0.26	-0.4
1,225,050	-		IAI47_05995	0.30	-0.0
1,225,050	-		IAI47_05995	0.30	-0.4
1,225,105	+		IAI47_05995	0.35	+0.1
1,225,105	+		IAI47_05995	0.35	-1.5
1,225,105	+		IAI47_05995	0.35	-0.2
1,225,105	+		IAI47_05995	0.35	-0.2
1,225,105	+		IAI47_05995	0.35	-1.0
1,225,105	+		IAI47_05995	0.35	+0.8
1,225,105	+		IAI47_05995	0.35	-0.6
1,225,105	+		IAI47_05995	0.35	+0.4
1,225,105	+		IAI47_05995	0.35	-0.7
1,225,105	+		IAI47_05995	0.35	-0.7
1,225,105	+		IAI47_05995	0.35	+1.9
1,225,105	+		IAI47_05995	0.35	-1.6
1,225,105	+		IAI47_05995	0.35	-1.7
1,225,105	+		IAI47_05995	0.35	+0.4
1,225,105	+		IAI47_05995	0.35	-0.1
1,225,105	+		IAI47_05995	0.35	+0.9
1,225,105	+		IAI47_05995	0.35	-1.0
1,225,105	+		IAI47_05995	0.35	+1.4
1,225,106	-		IAI47_05995	0.35	-0.8
1,225,106	-		IAI47_05995	0.35	-0.8
1,225,106	-		IAI47_05995	0.35	-0.1
1,225,106	-		IAI47_05995	0.35	-0.0
1,225,106	-		IAI47_05995	0.35	-0.5
1,225,106	-		IAI47_05995	0.35	+0.6
1,225,106	-		IAI47_05995	0.35	+0.1
1,225,106	-		IAI47_05995	0.35	-1.4
1,225,106	-		IAI47_05995	0.35	+0.4
1,225,106	-		IAI47_05995	0.35	-1.6
1,225,106	-		IAI47_05995	0.35	+0.0
1,225,106	-		IAI47_05995	0.35	-0.6
1,225,106	-		IAI47_05995	0.35	-1.2
1,225,106	-		IAI47_05995	0.35	+0.4
1,225,106	-		IAI47_05995	0.35	+0.1
1,225,106	-		IAI47_05995	0.35	-0.3
1,225,106	-		IAI47_05995	0.35	+0.7
1,225,106	-		IAI47_05995	0.35	+0.7
1,225,106	-		IAI47_05995	0.35	+1.0
1,225,106	-		IAI47_05995	0.35	-1.7
1,225,106	-		IAI47_05995	0.35	+1.3
1,225,107	+		IAI47_05995	0.35	-2.0
1,225,107	+		IAI47_05995	0.35	+0.5
1,225,107	+		IAI47_05995	0.35	+1.4
1,225,108	-		IAI47_05995	0.35	-0.8
1,225,170	-		IAI47_05995	0.41	+0.1
1,225,180	+		IAI47_05995	0.42	-0.2
1,225,271	+		IAI47_05995	0.50	+0.7
1,225,271	+		IAI47_05995	0.50	+0.5
1,225,271	+		IAI47_05995	0.50	-1.4
1,225,289	+		IAI47_05995	0.52	+0.3
1,225,289	+		IAI47_05995	0.52	-1.2
1,225,289	+		IAI47_05995	0.52	+1.9
1,225,289	+		IAI47_05995	0.52	-0.7
1,225,289	+		IAI47_05995	0.52	+0.8
1,225,289	+		IAI47_05995	0.52	+0.8
1,225,290	-		IAI47_05995	0.52	-1.6
1,225,290	-		IAI47_05995	0.52	+0.3
1,225,290	-		IAI47_05995	0.52	-0.7
1,225,294	+		IAI47_05995	0.53	+2.7
1,225,294	+		IAI47_05995	0.53	-0.8
1,225,294	+		IAI47_05995	0.53	-0.0
1,225,294	+		IAI47_05995	0.53	+0.5
1,225,294	+		IAI47_05995	0.53	-0.7
1,225,295	-		IAI47_05995	0.53	-2.6
1,225,295	-		IAI47_05995	0.53	-0.5
1,225,295	-		IAI47_05995	0.53	-0.3
1,225,295	-		IAI47_05995	0.53	+0.8
1,225,295	-		IAI47_05995	0.53	+1.3
1,225,295	-		IAI47_05995	0.53	+0.6
1,225,295	-		IAI47_05995	0.53	+0.2
1,225,362	+		IAI47_05995	0.59	-2.4
1,225,389	+		IAI47_05995	0.61	+0.8
1,225,390	-		IAI47_05995	0.62	+2.1
1,225,390	-		IAI47_05995	0.62	-0.3
1,225,390	-		IAI47_05995	0.62	+0.8
1,225,390	-		IAI47_05995	0.62	-0.9
1,225,390	-		IAI47_05995	0.62	-0.0
1,225,390	-		IAI47_05995	0.62	-0.0
1,225,393	+		IAI47_05995	0.62	-0.9
1,225,393	+		IAI47_05995	0.62	-0.9
1,225,393	+		IAI47_05995	0.62	+1.6
1,225,393	+		IAI47_05995	0.62	+1.7
1,225,393	+		IAI47_05995	0.62	-1.3
1,225,393	+		IAI47_05995	0.62	-0.7
1,225,393	+		IAI47_05995	0.62	+3.5
1,225,394	-		IAI47_05995	0.62	-0.5
1,225,394	-		IAI47_05995	0.62	-0.8
1,225,394	-		IAI47_05995	0.62	-0.9
1,225,394	-		IAI47_05995	0.62	-0.6
1,225,394	-		IAI47_05995	0.62	+0.0
1,225,394	-		IAI47_05995	0.62	-1.6
1,225,394	-		IAI47_05995	0.62	-0.2
1,225,394	-		IAI47_05995	0.62	-1.9
1,225,415	+		IAI47_05995	0.64	-1.3
1,225,415	+		IAI47_05995	0.64	+0.7
1,225,415	+		IAI47_05995	0.64	-1.0
1,225,485	+		IAI47_05995	0.70	-0.9
1,225,485	+		IAI47_05995	0.70	-0.1
1,225,485	+		IAI47_05995	0.70	-0.7
1,225,485	+		IAI47_05995	0.70	-1.9
1,225,485	+		IAI47_05995	0.70	-0.2
1,225,485	+		IAI47_05995	0.70	+2.2
1,225,486	-		IAI47_05995	0.71	-0.3
1,225,486	-		IAI47_05995	0.71	-0.7
1,225,486	-		IAI47_05995	0.71	-0.2
1,225,489	-		IAI47_05995	0.71	+0.9
1,225,489	-		IAI47_05995	0.71	-1.0
1,225,517	+		IAI47_05995	0.73	+0.0
1,225,517	+		IAI47_05995	0.73	-0.3
1,225,517	+		IAI47_05995	0.73	+0.1
1,225,517	+		IAI47_05995	0.73	-0.7
1,225,518	-		IAI47_05995	0.74	-1.1
1,225,518	-		IAI47_05995	0.74	+0.1
1,225,590	-		IAI47_05995	0.80	-0.1
1,225,669	+		IAI47_05995	0.88	-1.9
1,225,669	+		IAI47_05995	0.88	+1.8
1,225,669	+		IAI47_05995	0.88	+1.3
1,225,669	+		IAI47_05995	0.88	-1.6
1,225,669	+		IAI47_05995	0.88	-0.7
1,225,669	+		IAI47_05995	0.88	+1.8
1,225,670	-		IAI47_05995	0.88	-0.4
1,225,670	-		IAI47_05995	0.88	-0.0
1,225,670	-		IAI47_05995	0.88	-2.8
1,225,670	-		IAI47_05995	0.88	-1.3
1,225,670	-		IAI47_05995	0.88	-0.6
1,225,670	-		IAI47_05995	0.88	-2.2
1,225,670	-		IAI47_05995	0.88	+0.8
1,225,670	-		IAI47_05995	0.88	-0.0
1,225,670	-		IAI47_05995	0.88	-2.3
1,225,670	-		IAI47_05995	0.88	-0.3
1,225,670	-		IAI47_05995	0.88	+1.2
1,225,671	+		IAI47_05995	0.88	+1.0
1,225,671	+		IAI47_05995	0.88	+0.3
1,225,671	+		IAI47_05995	0.88	+0.4
1,225,672	-		IAI47_05995	0.88	+1.0
1,225,672	-		IAI47_05995	0.88	-0.1
1,225,690	+		IAI47_05995	0.90	-2.3
1,225,690	+		IAI47_05995	0.90	+0.2
1,225,691	-		IAI47_05995	0.90	-0.5
1,225,691	-		IAI47_05995	0.90	+0.2
1,225,691	-		IAI47_05995	0.90	-0.5
1,225,693	-		IAI47_05995	0.90	-0.3
1,225,693	-		IAI47_05995	0.90	+1.1
1,225,720	+				+0.6
1,225,720	+				-1.4
1,225,720	+				+0.1
1,225,720	+				-1.1
1,225,720	+				-0.7
1,225,721	-				-1.1
1,225,721	-				-1.5
1,225,721	-				+1.4
1,225,721	-				-0.1
1,225,722	+				-0.4
1,225,723	-				-0.1
1,225,723	-				-0.6
1,225,778	+				+1.1
1,225,779	-				-1.7
1,225,814	-				-1.9
1,225,831	+				-0.7
1,225,831	+				+3.7
1,225,832	-				+0.0
1,225,832	-				+3.9
1,225,832	-				-0.5
1,225,832	-				+0.5
1,225,832	-				+0.6
1,225,832	-				-0.9
1,225,849	+				-1.3
1,225,850	-				-1.4
1,225,850	-				+0.3
1,225,859	+				-0.3
1,225,859	+				+1.2
1,225,859	+				+0.7
1,225,859	+				-1.8
1,225,860	-				+0.5
1,225,860	-				-2.5
1,225,861	+				-0.1
1,225,861	+				-2.5
1,225,861	+				+0.2
1,225,861	+				+1.7
1,225,861	+				-1.5
1,225,862	-				-0.4
1,225,862	-				+0.4
1,225,862	-				-0.6
1,225,862	-				-0.5
1,225,862	-				+0.2
1,225,862	-				-0.9
1,225,862	-				+0.2
1,225,862	-				-0.6
1,225,862	-				-1.1
1,225,865	+				-1.0
1,225,865	+				-0.4
1,225,865	+				-2.0
1,225,865	+				-0.5
1,225,865	+				-0.8
1,225,865	+				+2.8
1,225,865	+				+0.1
1,225,865	+				-0.1
1,225,865	+				-1.8
1,225,865	+				+0.4
1,225,865	+				+0.1
1,225,865	+				+1.0
1,225,865	+				-1.1
1,225,865	+				-1.7
1,225,865	+				-0.1
1,225,865	+				-2.2
1,225,866	-				-3.4
1,225,866	-				-1.2
1,225,866	-				+0.3
1,225,866	-				-0.8
1,225,866	-				-0.3
1,225,866	-				-0.6
1,225,866	-				-1.0
1,225,866	-				-1.2
1,225,866	-				+0.7
1,225,873	+				-0.3
1,225,892	+				-1.6
1,225,893	-				+1.4
1,225,893	-				+1.4
1,225,893	-				-0.3
1,225,907	+		IAI47_06000	0.12	-2.0
1,225,907	+		IAI47_06000	0.12	+1.7
1,225,907	+		IAI47_06000	0.12	-2.3
1,225,907	+		IAI47_06000	0.12	+0.1
1,225,908	-		IAI47_06000	0.12	-0.2
1,225,908	-		IAI47_06000	0.12	+0.7
1,225,908	-		IAI47_06000	0.12	-0.5
1,225,927	+		IAI47_06000	0.19	+0.9
1,225,927	+		IAI47_06000	0.19	+0.3
1,225,927	+		IAI47_06000	0.19	-0.9
1,225,927	+		IAI47_06000	0.19	+1.2
1,225,927	+		IAI47_06000	0.19	+0.4
1,225,928	-		IAI47_06000	0.19	-1.3
1,225,928	-		IAI47_06000	0.19	-1.1
1,225,928	-		IAI47_06000	0.19	-0.4
1,225,928	-		IAI47_06000	0.19	+0.8
1,225,928	-		IAI47_06000	0.19	+2.8
1,225,928	-		IAI47_06000	0.19	-0.5
1,225,931	+		IAI47_06000	0.20	+2.1
1,225,931	+		IAI47_06000	0.20	-1.2
1,225,931	+		IAI47_06000	0.20	-0.2
1,225,931	+		IAI47_06000	0.20	-1.8
1,225,932	-		IAI47_06000	0.21	-0.3
1,225,932	-		IAI47_06000	0.21	+1.0
1,225,983	+		IAI47_06000	0.39	+1.0
1,225,984	-		IAI47_06000	0.39	+1.6
1,225,984	-		IAI47_06000	0.39	+0.4
1,225,984	-		IAI47_06000	0.39	+1.7
1,225,984	-		IAI47_06000	0.39	+0.4
1,225,985	+		IAI47_06000	0.40	+1.0
1,225,985	+		IAI47_06000	0.40	+2.0
1,225,985	+		IAI47_06000	0.40	+1.2
1,225,985	+		IAI47_06000	0.40	+1.6
1,225,985	+		IAI47_06000	0.40	-1.3
1,225,985	+		IAI47_06000	0.40	-2.3
1,225,985	+		IAI47_06000	0.40	-2.4
1,225,986	-		IAI47_06000	0.40	-0.8
1,225,986	-		IAI47_06000	0.40	-0.8
1,225,986	-		IAI47_06000	0.40	+0.1
1,225,986	-		IAI47_06000	0.40	+0.4
1,225,986	-		IAI47_06000	0.40	+0.2
1,225,998	+		IAI47_06000	0.45	-1.2
1,225,998	+		IAI47_06000	0.45	-0.2
1,225,998	+		IAI47_06000	0.45	-1.0
1,225,998	+		IAI47_06000	0.45	+1.2
1,225,998	+		IAI47_06000	0.45	-0.8
1,225,998	+		IAI47_06000	0.45	+0.5
1,225,998	+		IAI47_06000	0.45	-0.1
1,225,999	-		IAI47_06000	0.45	+0.8
1,226,025	+		IAI47_06000	0.54	-0.8
1,226,026	-		IAI47_06000	0.55	-0.4
1,226,037	+		IAI47_06000	0.59	+1.1
1,226,037	+		IAI47_06000	0.59	-0.5
1,226,037	+		IAI47_06000	0.59	-0.3
1,226,037	+		IAI47_06000	0.59	-0.4
1,226,037	+		IAI47_06000	0.59	-0.1
1,226,037	+		IAI47_06000	0.59	-0.3
1,226,037	+		IAI47_06000	0.59	-0.6
1,226,038	-		IAI47_06000	0.59	+1.4
1,226,038	-		IAI47_06000	0.59	+2.8
1,226,038	-		IAI47_06000	0.59	+2.2
1,226,038	-		IAI47_06000	0.59	-1.8
1,226,060	+		IAI47_06000	0.67	+0.2
1,226,061	-		IAI47_06000	0.67	+0.7
1,226,061	-		IAI47_06000	0.67	+1.7
1,226,130	+				-1.3
1,226,130	+				+0.1
1,226,131	-				-0.7
1,226,131	-				+0.9
1,226,152	+				+0.1
1,226,165	+				-0.8
1,226,165	+				+1.1
1,226,166	-				-0.7
1,226,166	-				+0.7
1,226,166	-				+0.6
1,226,202	+				+0.3
1,226,202	+				+2.5
1,226,202	+				-0.1
1,226,202	+				+2.5
1,226,202	+				-1.1
1,226,202	+				-0.6
1,226,203	-				-1.4
1,226,203	-				+1.2
1,226,203	-				+0.4
1,226,203	-				-0.7
1,226,203	-				+0.1
1,226,203	-				-0.6
1,226,203	-				+0.8
1,226,203	-				+0.2
1,226,248	+				-2.6
1,226,248	+				-0.3
1,226,248	+				+1.5
1,226,248	+				-0.3
1,226,249	-				-1.0
1,226,249	-				-0.3
1,226,250	+				+2.4
1,226,251	-				+2.4
1,226,251	-				-2.3
1,226,352	+		IAI47_06005	0.20	-0.6
1,226,352	+		IAI47_06005	0.20	-0.7
1,226,353	-		IAI47_06005	0.20	+0.1
1,226,353	-		IAI47_06005	0.20	-1.6
1,226,353	-		IAI47_06005	0.20	+1.6
1,226,353	-		IAI47_06005	0.20	+2.0
1,226,382	+		IAI47_06005	0.24	+1.7
1,226,500	-		IAI47_06005	0.39	+1.2
1,226,589	+		IAI47_06005	0.51	+1.6
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1,226,675	-		IAI47_06005	0.63	-0.7
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1,226,675	-		IAI47_06005	0.63	-0.2
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1,226,752	-		IAI47_06005	0.73	-0.5
1,226,775	+		IAI47_06005	0.76	-0.2
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1,226,826	+		IAI47_06005	0.83	+1.2
1,226,827	-		IAI47_06005	0.83	-0.4
1,226,852	+		IAI47_06005	0.86	-2.3
1,226,852	+		IAI47_06005	0.86	-0.5
1,226,853	-		IAI47_06005	0.86	+1.1
1,226,904	+				-2.3
1,226,904	+				+2.0
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1,227,076	-		IAI47_06010	0.34	+0.3