Strain Fitness in Pantoea sp. MT58 around IAI47_05150

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,085,934	+				+1.8
1,085,976	-				+0.8
1,085,995	+				-0.9
1,085,995	+				-0.7
1,085,995	+				+1.0
1,085,995	+				+1.3
1,085,995	+				+1.7
1,085,995	+				+2.0
1,085,996	-				+0.9
1,086,028	+		IAI47_05140	0.22	+1.4
1,086,029	-		IAI47_05140	0.23	+0.8
1,086,070	+		IAI47_05140	0.45	-1.3
1,086,071	-		IAI47_05140	0.45	-0.2
1,086,071	-		IAI47_05140	0.45	+0.0
1,086,097	+		IAI47_05140	0.59	-1.4
1,086,097	+		IAI47_05140	0.59	-0.3
1,086,097	+		IAI47_05140	0.59	+1.4
1,086,098	-		IAI47_05140	0.60	+0.4
1,086,098	-		IAI47_05140	0.60	-1.3
1,086,098	-		IAI47_05140	0.60	+0.3
1,086,098	-		IAI47_05140	0.60	+0.1
1,086,098	-		IAI47_05140	0.60	-1.0
1,086,160	+				-2.0
1,086,161	-				-0.7
1,086,161	-				+0.3
1,086,161	-				-0.9
1,086,161	-				+0.9
1,086,161	-				-0.9
1,086,161	-				-0.6
1,086,188	+				+1.1
1,086,188	+				-1.0
1,086,188	+				+0.8
1,086,188	+				-1.4
1,086,188	+				-1.3
1,086,189	-				-0.4
1,086,216	+				+0.7
1,086,216	+				-1.2
1,086,220	+				+3.0
1,086,221	-				-1.2
1,086,221	-				-0.2
1,086,269	+				+3.0
1,086,269	+				-0.3
1,086,269	+				-0.4
1,086,270	-				-1.7
1,086,270	-				-0.7
1,086,279	+				+1.0
1,086,280	-				+1.1
1,086,280	-				-0.4
1,086,280	-				-0.9
1,086,280	-				-0.8
1,086,280	-				+1.6
1,086,280	-				-2.4
1,086,299	+				+1.3
1,086,299	+				-0.4
1,086,299	+				-2.3
1,086,343	+		IAI47_05145	0.11	+1.1
1,086,343	+		IAI47_05145	0.11	-1.9
1,086,343	+		IAI47_05145	0.11	-0.5
1,086,343	+		IAI47_05145	0.11	+0.9
1,086,344	-		IAI47_05145	0.11	-0.9
1,086,344	-		IAI47_05145	0.11	-0.2
1,086,344	-		IAI47_05145	0.11	-1.5
1,086,372	+		IAI47_05145	0.16	+0.8
1,086,372	+		IAI47_05145	0.16	+1.7
1,086,372	+		IAI47_05145	0.16	+0.6
1,086,373	-		IAI47_05145	0.16	+1.4
1,086,373	-		IAI47_05145	0.16	-0.3
1,086,373	-		IAI47_05145	0.16	-1.0
1,086,373	-		IAI47_05145	0.16	-0.7
1,086,373	-		IAI47_05145	0.16	-0.8
1,086,399	+		IAI47_05145	0.20	+0.2
1,086,399	+		IAI47_05145	0.20	-1.4
1,086,399	+		IAI47_05145	0.20	+0.4
1,086,399	+		IAI47_05145	0.20	+0.6
1,086,399	+		IAI47_05145	0.20	-0.2
1,086,400	-		IAI47_05145	0.20	+0.8
1,086,400	-		IAI47_05145	0.20	-1.0
1,086,400	-		IAI47_05145	0.20	+0.0
1,086,400	-		IAI47_05145	0.20	+1.1
1,086,400	-		IAI47_05145	0.20	-0.6
1,086,422	-		IAI47_05145	0.24	+0.6
1,086,454	+		IAI47_05145	0.29	+3.0
1,086,454	+		IAI47_05145	0.29	-0.9
1,086,455	-		IAI47_05145	0.29	+0.9
1,086,455	-		IAI47_05145	0.29	-0.4
1,086,455	-		IAI47_05145	0.29	-0.3
1,086,563	+		IAI47_05145	0.47	-0.1
1,086,564	-		IAI47_05145	0.47	+1.1
1,086,564	-		IAI47_05145	0.47	-0.4
1,086,564	-		IAI47_05145	0.47	+1.1
1,086,635	+		IAI47_05145	0.59	+0.5
1,086,635	+		IAI47_05145	0.59	+1.3
1,086,636	-		IAI47_05145	0.59	+1.6
1,086,636	-		IAI47_05145	0.59	+0.5
1,086,636	-		IAI47_05145	0.59	+3.0
1,086,636	-		IAI47_05145	0.59	-0.2
1,086,638	-		IAI47_05145	0.59	+0.4
1,086,661	+		IAI47_05145	0.63	+0.8
1,086,742	+		IAI47_05145	0.76	+0.3
1,086,742	+		IAI47_05145	0.76	-0.0
1,086,742	+		IAI47_05145	0.76	+1.1
1,086,743	-		IAI47_05145	0.76	-1.0
1,086,743	-		IAI47_05145	0.76	-0.6
1,086,743	-		IAI47_05145	0.76	-1.0
1,086,787	+		IAI47_05145	0.83	+1.8
1,086,787	+		IAI47_05145	0.83	+0.6
1,086,788	-		IAI47_05145	0.83	-0.2
1,086,830	+				-1.2
1,086,836	+				-0.2
1,086,837	+				-1.7
1,086,837	+				+2.1
1,086,837	+				-0.7
1,086,837	+				-0.8
1,086,837	+				-0.8
1,086,837	+				+2.0
1,086,837	+				+1.1
1,086,838	-				-0.4
1,086,838	-				-0.1
1,086,838	-				-0.9
1,086,838	-				+0.2
1,086,838	-				+1.8
1,086,838	-				+1.3
1,086,838	-				+0.0
1,086,838	-				+0.8
1,086,838	-				-0.5
1,086,838	-				-2.6
1,086,852	+				-0.4
1,086,853	-				+1.4
1,086,853	-				-0.7
1,086,889	+				-0.1
1,086,889	+				-0.5
1,086,889	+				+1.7
1,086,889	+				-0.4
1,086,889	+				-1.8
1,086,889	+				+0.6
1,086,889	+				+0.4
1,086,890	-				-0.2
1,086,905	+				+0.3
1,086,905	+				-0.9
1,086,936	+				+0.4
1,086,936	+				+0.0
1,086,936	+				+0.3
1,086,936	+				-0.4
1,086,936	+				+1.1
1,086,937	-				-1.8
1,086,937	-				+0.1
1,086,937	-				+1.4
1,086,937	-				-0.6
1,086,937	-				+0.1
1,086,981	-				+0.4
1,087,031	+				+2.6
1,087,116	+		IAI47_05150	0.12	+1.4
1,087,117	-		IAI47_05150	0.12	-0.8
1,087,192	+		IAI47_05150	0.17	-1.5
1,087,192	+		IAI47_05150	0.17	+0.8
1,087,193	-		IAI47_05150	0.17	+1.6
1,087,215	+				-1.4
1,087,215	+		IAI47_05150	0.19	-0.6
1,087,215	+		IAI47_05150	0.19	+0.3
1,087,216	-		IAI47_05150	0.19	-1.2
1,087,243	+		IAI47_05150	0.20	-1.5
1,087,243	+		IAI47_05150	0.20	-1.5
1,087,244	-		IAI47_05150	0.20	-2.3
1,087,293	+		IAI47_05150	0.24	+0.7
1,087,293	+		IAI47_05150	0.24	+0.1
1,087,294	-		IAI47_05150	0.24	-1.2
1,087,294	-		IAI47_05150	0.24	-0.7
1,087,294	-		IAI47_05150	0.24	-1.3
1,087,294	-		IAI47_05150	0.24	-1.7
1,087,295	+		IAI47_05150	0.24	-0.8
1,087,295	+		IAI47_05150	0.24	+0.8
1,087,295	+		IAI47_05150	0.24	-1.8
1,087,295	+				+1.4
1,087,295	+		IAI47_05150	0.24	+0.8
1,087,295	+		IAI47_05150	0.24	-1.6
1,087,295	+		IAI47_05150	0.24	+3.7
1,087,295	+		IAI47_05150	0.24	+0.4
1,087,296	-		IAI47_05150	0.24	+0.1
1,087,330	-		IAI47_05150	0.26	-1.7
1,087,367	-		IAI47_05150	0.29	-0.2
1,087,424	+		IAI47_05150	0.32	-1.5
1,087,425	-		IAI47_05150	0.32	-1.4
1,087,425	-		IAI47_05150	0.32	-1.0
1,087,425	-		IAI47_05150	0.32	-1.6
1,087,425	-		IAI47_05150	0.32	-2.0
1,087,425	-		IAI47_05150	0.32	+0.8
1,087,478	+		IAI47_05150	0.36	-0.4
1,087,478	+		IAI47_05150	0.36	-0.6
1,087,478	+		IAI47_05150	0.36	-0.1
1,087,478	+		IAI47_05150	0.36	-0.9
1,087,479	-		IAI47_05150	0.36	+0.3
1,087,515	+		IAI47_05150	0.38	-0.4
1,087,547	+		IAI47_05150	0.40	+1.0
1,087,547	+		IAI47_05150	0.40	-1.6
1,087,547	+		IAI47_05150	0.40	-0.5
1,087,698	+		IAI47_05150	0.50	+0.2
1,087,698	+		IAI47_05150	0.50	-0.0
1,087,698	+		IAI47_05150	0.50	-1.2
1,087,698	+		IAI47_05150	0.50	+0.8
1,087,699	-		IAI47_05150	0.50	+1.4
1,087,699	-		IAI47_05150	0.50	+1.4
1,087,699	-		IAI47_05150	0.50	-0.4
1,087,699	-		IAI47_05150	0.50	-0.9
1,087,699	-		IAI47_05150	0.50	-1.0
1,087,718	+		IAI47_05150	0.52	-0.4
1,087,718	+		IAI47_05150	0.52	-0.0
1,087,719	-		IAI47_05150	0.52	-1.6
1,087,719	-		IAI47_05150	0.52	-0.3
1,087,719	-		IAI47_05150	0.52	+0.8
1,087,743	+		IAI47_05150	0.53	-0.9
1,087,744	-		IAI47_05150	0.53	+1.4
1,087,744	-		IAI47_05150	0.53	-1.0
1,087,744	-		IAI47_05150	0.53	-1.4
1,087,820	+		IAI47_05150	0.58	-1.0
1,087,841	+		IAI47_05150	0.60	-0.2
1,087,929	-		IAI47_05150	0.65	-0.3
1,087,929	-		IAI47_05150	0.65	-1.4
1,087,929	-		IAI47_05150	0.65	+0.6
1,088,076	+		IAI47_05150	0.75	-1.3
1,088,077	-		IAI47_05150	0.75	-0.3
1,088,185	-		IAI47_05150	0.82	-1.6
1,088,185	-		IAI47_05150	0.82	-1.8
1,088,332	-				-1.0
1,088,377	+				+2.4
1,088,377	+				-0.5
1,088,377	+				+0.3
1,088,377	+				-0.4
1,088,377	+				-2.2
1,088,378	-				-0.2
1,088,378	-				-0.7
1,088,378	-				-2.0
1,088,378	-				-0.6
1,088,382	+				-0.1
1,088,436	+				-0.8
1,088,442	+				-1.1
1,088,457	+				+0.4
1,088,457	+				+0.8
1,088,458	-				+0.3
1,088,464	+				+0.4
1,088,464	+				-0.5
1,088,464	+				-1.1
1,088,491	+				+1.1
1,088,491	+				-0.8
1,088,491	+				-0.4
1,088,491	+				-0.7
1,088,491	+				-1.3
1,088,491	+				+2.2
1,088,491	+				+0.7
1,088,492	-				-1.2
1,088,492	-				-0.5
1,088,492	-				+1.3
1,088,492	-				+1.0
1,088,492	-				-0.0
1,088,492	-				+0.4
1,088,497	+				-1.1
1,088,497	+				-2.4
1,088,497	+				-0.9
1,088,497	+				+0.2
1,088,497	+				-0.8
1,088,497	+				-0.3
1,088,497	+				+1.4
1,088,497	+				-2.3
1,088,497	+				-2.2
1,088,498	-				-0.2
1,088,498	-				-0.7
1,088,498	-				-1.8
1,088,498	-				-0.4
1,088,498	-				-1.8
1,088,498	-				-1.2
1,088,498	-				-0.5
1,088,498	-				-0.0
1,088,498	-				-0.3
1,088,498	-				+1.1
1,088,498	-				-1.8
1,088,523	-				-0.7
1,088,545	+				-2.2
1,088,545	+				+0.4
1,088,545	+				-0.2
1,088,546	-				-2.0
1,088,546	-				+0.1
1,088,546	-				+0.7
1,088,546	-				+0.2
1,088,553	-				-0.5
1,088,553	-				-0.3
1,088,553	-				+1.4
1,088,588	+				-0.6
1,088,589	-				-1.9
1,088,589	-				-0.7
1,088,603	+				-0.8
1,088,604	-				+0.4
1,088,604	-				+0.8
1,088,604	-				+0.5
1,088,609	+				-2.4
1,088,609	+				-0.1
1,088,609	+				-0.0
1,088,609	+				-0.0
1,088,609	+				-1.2
1,088,609	+				-0.9
1,088,610	-				-0.6
1,088,610	-				-1.1
1,088,610	-				+3.7
1,088,610	-				+3.4
1,088,610	-				-0.4
1,088,619	+				+2.0
1,088,620	-				-0.8
1,088,620	-				+0.5
1,088,620	-				-0.0
1,088,621	+				+1.1
1,088,621	+				+2.4
1,088,621	+				-0.7
1,088,621	+				+0.1
1,088,621	+				-2.0
1,088,621	+				-2.1
1,088,621	+				-0.8
1,088,622	-				+0.2
1,088,622	-				-0.4
1,088,622	-				+0.1
1,088,622	-				-1.5
1,088,622	-				+0.1
1,088,682	-		IAI47_05155	0.11	-1.0
1,088,721	-		IAI47_05155	0.13	+1.9
1,088,742	-		IAI47_05155	0.14	+0.1
1,088,742	-		IAI47_05155	0.14	-0.5
1,088,742	-		IAI47_05155	0.14	+1.4
1,088,765	-		IAI47_05155	0.15	+1.4
1,088,777	+		IAI47_05155	0.15	+0.1
1,088,778	-		IAI47_05155	0.15	+0.1
1,088,778	-		IAI47_05155	0.15	-1.3
1,088,778	-		IAI47_05155	0.15	-0.1
1,088,793	-		IAI47_05155	0.16	+1.1
1,088,824	-		IAI47_05155	0.18	+0.1
1,088,824	-		IAI47_05155	0.18	+0.6
1,088,824	-		IAI47_05155	0.18	+1.1
1,088,824	-		IAI47_05155	0.18	+1.4
1,088,859	+		IAI47_05155	0.19	+0.2
1,088,866	+		IAI47_05155	0.20	-1.0
1,088,866	-		IAI47_05155	0.20	+0.1
1,088,866	-		IAI47_05155	0.20	+1.7
1,088,879	+		IAI47_05155	0.20	+1.4
1,088,879	+		IAI47_05155	0.20	-1.4
1,088,880	-		IAI47_05155	0.20	+6.1
1,088,880	-		IAI47_05155	0.20	-2.5
1,088,880	-		IAI47_05155	0.20	+0.2
1,088,880	-		IAI47_05155	0.20	-0.2
1,088,880	-		IAI47_05155	0.20	+1.0
1,088,880	-		IAI47_05155	0.20	-1.4
1,088,880	-		IAI47_05155	0.20	+1.5
1,088,881	+		IAI47_05155	0.20	+0.1
1,088,881	+		IAI47_05155	0.20	-0.3
1,088,882	-		IAI47_05155	0.20	+0.9
1,088,882	-		IAI47_05155	0.20	+0.6
1,088,920	-		IAI47_05155	0.22	-0.6
1,088,930	+		IAI47_05155	0.23	-0.2
1,088,945	+		IAI47_05155	0.23	+0.6
1,088,946	-		IAI47_05155	0.23	-1.5
1,088,946	-		IAI47_05155	0.23	-1.1
1,088,986	+		IAI47_05155	0.25	-0.4
1,088,986	+		IAI47_05155	0.25	-2.5
1,088,986	+		IAI47_05155	0.25	-1.4
1,088,986	+		IAI47_05155	0.25	+0.3
1,088,986	+		IAI47_05155	0.25	-1.7
1,088,986	+		IAI47_05155	0.25	-0.5
1,088,987	-		IAI47_05155	0.25	-1.7
1,088,987	-		IAI47_05155	0.25	+0.7
1,088,987	-		IAI47_05155	0.25	-2.0
1,088,987	-		IAI47_05155	0.25	-1.0
1,088,987	-		IAI47_05155	0.25	-0.5
1,088,987	-		IAI47_05155	0.25	+0.1
1,089,059	+		IAI47_05155	0.29	-0.7
1,089,118	+		IAI47_05155	0.32	-1.3
1,089,118	+		IAI47_05155	0.32	-1.0
1,089,118	+		IAI47_05155	0.32	-0.5
1,089,118	+		IAI47_05155	0.32	-0.5
1,089,119	-		IAI47_05155	0.32	-1.5
1,089,119	-		IAI47_05155	0.32	+0.4
1,089,119	-		IAI47_05155	0.32	+2.4
1,089,119	-		IAI47_05155	0.32	+0.2
1,089,119	-		IAI47_05155	0.32	-1.0
1,089,119	-		IAI47_05155	0.32	+0.1
1,089,127	+		IAI47_05155	0.32	+0.7
1,089,127	+		IAI47_05155	0.32	+0.7
1,089,128	-		IAI47_05155	0.32	+0.4
1,089,128	-		IAI47_05155	0.32	-0.4
1,089,128	-		IAI47_05155	0.32	+1.7
1,089,128	-		IAI47_05155	0.32	-0.3
1,089,128	-		IAI47_05155	0.32	-0.7
1,089,128	-		IAI47_05155	0.32	-0.2
1,089,149	+		IAI47_05155	0.33	+0.6
1,089,150	-		IAI47_05155	0.33	+0.3
1,089,150	-		IAI47_05155	0.33	-3.1
1,089,167	+		IAI47_05155	0.34	-0.5
1,089,292	+		IAI47_05155	0.40	+0.3
1,089,292	+		IAI47_05155	0.40	-1.0
1,089,293	-		IAI47_05155	0.40	+0.4
1,089,293	-		IAI47_05155	0.40	-1.2
1,089,300	-		IAI47_05155	0.41	+0.6
1,089,300	-		IAI47_05155	0.41	-0.7
1,089,357	-		IAI47_05155	0.43	+0.8
1,089,358	+		IAI47_05155	0.43	-0.6
1,089,358	+		IAI47_05155	0.43	-1.0
1,089,358	+		IAI47_05155	0.43	-1.1
1,089,358	+		IAI47_05155	0.43	-0.2
1,089,358	+		IAI47_05155	0.43	-0.2
1,089,359	-		IAI47_05155	0.43	+1.1
1,089,359	-		IAI47_05155	0.43	-0.1
1,089,383	+		IAI47_05155	0.45	-0.2
1,089,383	+		IAI47_05155	0.45	+0.2
1,089,383	+		IAI47_05155	0.45	+1.4
1,089,384	-		IAI47_05155	0.45	-0.5
1,089,409	+		IAI47_05155	0.46	+3.4
1,089,409	+		IAI47_05155	0.46	-2.0
1,089,409	+		IAI47_05155	0.46	-0.5
1,089,409	+		IAI47_05155	0.46	+0.3
1,089,409	+		IAI47_05155	0.46	+0.6
1,089,410	-		IAI47_05155	0.46	-1.0
1,089,410	-		IAI47_05155	0.46	+1.4