Strain Fitness in Pantoea sp. MT58 around IAI47_04950

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,039,020	-		IAI47_04945	0.43	+1.1
1,039,020	-		IAI47_04945	0.43	+1.5
1,039,020	-		IAI47_04945	0.43	+2.0
1,039,020	-		IAI47_04945	0.43	+2.6
1,039,020	-		IAI47_04945	0.43	-1.1
1,039,085	+		IAI47_04945	0.48	-0.8
1,039,086	-		IAI47_04945	0.48	+2.1
1,039,114	+		IAI47_04945	0.50	+0.2
1,039,114	+		IAI47_04945	0.50	-1.6
1,039,164	-		IAI47_04945	0.54	+1.5
1,039,184	+		IAI47_04945	0.55	-0.8
1,039,184	+		IAI47_04945	0.55	+1.8
1,039,184	+		IAI47_04945	0.55	-0.9
1,039,185	-		IAI47_04945	0.55	+0.7
1,039,185	-		IAI47_04945	0.55	+0.6
1,039,211	+		IAI47_04945	0.57	-0.4
1,039,211	+		IAI47_04945	0.57	-1.4
1,039,211	+		IAI47_04945	0.57	-0.9
1,039,212	-		IAI47_04945	0.57	+0.6
1,039,212	-		IAI47_04945	0.57	-0.5
1,039,241	+		IAI47_04945	0.60	+1.0
1,039,329	+		IAI47_04945	0.66	+0.7
1,039,329	+		IAI47_04945	0.66	-0.3
1,039,329	+		IAI47_04945	0.66	+1.6
1,039,329	+		IAI47_04945	0.66	-0.1
1,039,329	+		IAI47_04945	0.66	+0.6
1,039,329	+		IAI47_04945	0.66	-1.1
1,039,329	+		IAI47_04945	0.66	-0.3
1,039,330	-		IAI47_04945	0.66	-1.6
1,039,330	-		IAI47_04945	0.66	+0.1
1,039,385	+		IAI47_04945	0.70	+0.2
1,039,385	+		IAI47_04945	0.70	+0.7
1,039,433	+		IAI47_04945	0.74	+0.9
1,039,433	+		IAI47_04945	0.74	-0.6
1,039,433	+		IAI47_04945	0.74	-0.8
1,039,433	+		IAI47_04945	0.74	+0.6
1,039,434	-		IAI47_04945	0.74	+2.0
1,039,434	-		IAI47_04945	0.74	+0.5
1,039,434	-		IAI47_04945	0.74	-0.6
1,039,516	+		IAI47_04945	0.80	-1.4
1,039,631	+		IAI47_04945	0.89	+1.8
1,039,632	-		IAI47_04945	0.89	-0.5
1,039,650	+				-0.1
1,039,651	-				+1.5
1,039,651	-				-0.8
1,039,658	+				-0.4
1,039,658	+				-0.7
1,039,659	-				+0.0
1,039,659	-				-2.3
1,039,659	-				+1.7
1,039,731	+				+1.1
1,039,731	+				+0.4
1,039,732	-				-0.5
1,039,732	-				-1.0
1,039,732	-				+3.0
1,039,732	-				+1.7
1,039,732	-				-0.2
1,039,732	-				-0.2
1,039,732	-				+0.8
1,039,732	-				-0.7
1,039,732	-				-2.2
1,039,733	+				+1.2
1,039,733	+				+1.7
1,039,733	+				+0.0
1,039,733	+				+0.4
1,039,733	+				-0.6
1,039,733	+				-1.5
1,039,733	+				-0.5
1,039,734	-				-1.7
1,039,779	+				-0.8
1,039,780	-				+0.4
1,039,780	-				-0.8
1,039,796	+				-0.8
1,039,796	+				+0.1
1,039,797	-				-0.6
1,039,797	-				-0.1
1,039,797	-				+1.8
1,039,799	+				+0.9
1,039,799	+				+0.1
1,039,849	+				+2.1
1,039,850	-				+1.4
1,039,850	-				+0.8
1,039,850	-				+0.6
1,039,917	+				-0.0
1,039,917	+				-2.2
1,039,918	-				+1.1
1,039,918	-				+0.6
1,039,918	-				+0.8
1,039,918	-				-0.9
1,039,918	-				+0.2
1,039,918	-				+2.5
1,039,918	-				+0.3
1,039,918	-				-0.6
1,039,918	-				-2.0
1,039,919	+				+0.5
1,039,919	+				-0.4
1,039,926	+				+0.2
1,039,926	+				+0.2
1,039,926	+				+1.4
1,039,927	-				+0.2
1,039,986	+				-1.5
1,039,987	-				+0.1
1,040,063	+		IAI47_04950	0.29	-0.4
1,040,063	+		IAI47_04950	0.29	-0.2
1,040,063	+		IAI47_04950	0.29	-3.1
1,040,063	+		IAI47_04950	0.29	-1.2
1,040,064	-		IAI47_04950	0.29	+0.8
1,040,102	-		IAI47_04950	0.40	-2.5
1,040,102	-		IAI47_04950	0.40	+0.0
1,040,116	+		IAI47_04950	0.44	+0.5
1,040,116	+		IAI47_04950	0.44	-0.2
1,040,116	+		IAI47_04950	0.44	-1.4
1,040,116	+		IAI47_04950	0.44	-0.4
1,040,116	+		IAI47_04950	0.44	+0.2
1,040,116	+		IAI47_04950	0.44	+0.1
1,040,116	+		IAI47_04950	0.44	-0.4
1,040,116	+		IAI47_04950	0.44	-2.6
1,040,117	-		IAI47_04950	0.45	-1.5
1,040,117	-		IAI47_04950	0.45	-1.7
1,040,117	-		IAI47_04950	0.45	-0.9
1,040,117	-		IAI47_04950	0.45	-0.1
1,040,117	-		IAI47_04950	0.45	+0.4
1,040,117	-		IAI47_04950	0.45	+0.6
1,040,117	-		IAI47_04950	0.45	-0.4
1,040,117	-		IAI47_04950	0.45	+0.0
1,040,117	-		IAI47_04950	0.45	-0.9
1,040,117	-		IAI47_04950	0.45	-2.1
1,040,117	-		IAI47_04950	0.45	+0.2
1,040,117	-		IAI47_04950	0.45	-1.0
1,040,117	-		IAI47_04950	0.45	-0.0
1,040,118	+		IAI47_04950	0.45	+0.0
1,040,118	+		IAI47_04950	0.45	+0.6
1,040,118	+		IAI47_04950	0.45	+1.2
1,040,118	+		IAI47_04950	0.45	-0.7
1,040,118	+		IAI47_04950	0.45	-0.4
1,040,118	+		IAI47_04950	0.45	+1.1
1,040,118	+		IAI47_04950	0.45	-0.2
1,040,119	-		IAI47_04950	0.45	+0.4
1,040,119	-		IAI47_04950	0.45	+0.3
1,040,119	-		IAI47_04950	0.45	-1.7
1,040,119	-		IAI47_04950	0.45	-1.1
1,040,119	-		IAI47_04950	0.45	-1.0
1,040,132	+		IAI47_04950	0.49	-0.0
1,040,133	-		IAI47_04950	0.49	-1.4
1,040,136	+		IAI47_04950	0.50	-0.8
1,040,136	+		IAI47_04950	0.50	-1.4
1,040,136	+		IAI47_04950	0.50	+0.4
1,040,137	-		IAI47_04950	0.50	-0.3
1,040,137	-		IAI47_04950	0.50	-1.0
1,040,137	-		IAI47_04950	0.50	-2.2
1,040,137	-		IAI47_04950	0.50	-2.2
1,040,170	-		IAI47_04950	0.60	-0.0
1,040,170	-		IAI47_04950	0.60	-0.8
1,040,178	+		IAI47_04950	0.63	-2.2
1,040,178	+		IAI47_04950	0.63	+1.0
1,040,179	-		IAI47_04950	0.63	-0.9
1,040,179	-		IAI47_04950	0.63	-0.8
1,040,196	+		IAI47_04950	0.68	-1.7
1,040,197	-		IAI47_04950	0.68	-1.9
1,040,274	+				+1.1
1,040,314	+				+2.3
1,040,315	-				-0.6
1,040,325	-				-0.3
1,040,325	-				-0.8
1,040,331	+				+0.7
1,040,333	+				-0.6
1,040,334	-				+0.5
1,040,334	-				+0.2
1,040,334	-				-0.8
1,040,334	-				+1.3
1,040,361	-				-0.3
1,040,384	+				+2.8
1,040,384	+				-1.2
1,040,385	-				-2.2
1,040,385	-				+0.3
1,040,385	-				-1.7
1,040,472	-				-2.5
1,040,472	-				-0.4
1,040,546	+				-2.2
1,040,549	+				+2.7
1,040,549	+				+1.6
1,040,549	+				-0.9
1,040,549	+				+0.0
1,040,699	+				+0.6
1,040,699	+				+0.4
1,040,699	+				+0.1
1,040,699	+				+0.5
1,040,700	-				-0.5
1,040,700	-				+0.2
1,040,700	-				+0.7
1,040,700	-				+0.8
1,040,702	+				-0.2
1,040,703	-				+2.5
1,040,711	+				+0.8
1,040,711	+				+0.9
1,040,711	+				-0.1
1,040,712	-				-0.3
1,040,712	-				+0.5
1,040,712	-				-0.1
1,040,712	-				+0.4
1,040,712	-				-0.8
1,040,712	-				+1.7
1,040,741	+				-0.9
1,040,742	-				+0.6
1,040,799	+				-0.6
1,040,799	+				-0.2
1,040,800	-				-1.9
1,040,800	-				+0.3
1,040,800	-				+0.6
1,040,800	-				+1.3
1,040,806	+				+1.7
1,040,822	+				+0.1
1,040,822	+				+0.1
1,040,822	+				-0.5
1,040,822	+				-1.7
1,040,823	-				+1.4
1,040,823	-				-1.8
1,040,823	-				+1.6
1,040,823	-				+1.1
1,040,823	-				+1.9
1,040,823	-				+1.3
1,040,823	-				+0.6
1,040,823	-				-0.7
1,040,868	+		IAI47_04955	0.13	-1.7
1,040,868	+		IAI47_04955	0.13	+0.1
1,040,869	-		IAI47_04955	0.13	-3.4
1,040,891	+		IAI47_04955	0.15	+0.7
1,040,891	+		IAI47_04955	0.15	-0.1
1,041,240	+		IAI47_04955	0.45	-0.7
1,041,240	+		IAI47_04955	0.45	-1.6
1,041,240	+		IAI47_04955	0.45	+0.7
1,041,240	+		IAI47_04955	0.45	-1.0
1,041,241	-		IAI47_04955	0.45	+0.2
1,041,241	-		IAI47_04955	0.45	-1.0
1,041,241	-		IAI47_04955	0.45	+0.9
1,041,241	-		IAI47_04955	0.45	-1.6
1,041,245	+		IAI47_04955	0.45	+1.0
1,041,252	+		IAI47_04955	0.46	-1.0
1,041,253	-		IAI47_04955	0.46	+1.4
1,041,253	-		IAI47_04955	0.46	+0.2
1,041,253	-		IAI47_04955	0.46	-0.3
1,041,278	+		IAI47_04955	0.48	+0.3
1,041,278	+		IAI47_04955	0.48	-1.2
1,041,279	-		IAI47_04955	0.48	+1.6
1,041,279	-		IAI47_04955	0.48	+1.7