Strain Fitness in Pantoea sp. MT58 around IAI47_01245

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01240 and IAI47_01245 are separated by 10 nucleotidesIAI47_01245 and IAI47_01250 are separated by 16 nucleotides IAI47_01240: IAI47_01240 - potassium-transporting ATPase subunit KdpB, at 265,992 to 268,040 _01240 IAI47_01245: IAI47_01245 - potassium-transporting ATPase subunit KdpC, at 268,051 to 268,617 _01245 IAI47_01250: IAI47_01250 - two-component system sensor histidine kinase KdbD, at 268,634 to 271,309 _01250 Position (kb) 268 269Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 267.053 kb on - strand, within IAI47_01240at 267.113 kb on + strand, within IAI47_01240at 267.113 kb on + strand, within IAI47_01240at 267.114 kb on - strand, within IAI47_01240at 267.114 kb on - strand, within IAI47_01240at 267.332 kb on + strand, within IAI47_01240at 267.332 kb on + strand, within IAI47_01240at 267.410 kb on + strand, within IAI47_01240at 267.410 kb on + strand, within IAI47_01240at 267.411 kb on - strand, within IAI47_01240at 267.507 kb on + strand, within IAI47_01240at 267.507 kb on + strand, within IAI47_01240at 267.686 kb on + strand, within IAI47_01240at 267.729 kb on - strand, within IAI47_01240at 267.729 kb on - strand, within IAI47_01240at 267.729 kb on - strand, within IAI47_01240at 267.762 kb on - strand, within IAI47_01240at 267.786 kb on + strand, within IAI47_01240at 267.787 kb on - strand, within IAI47_01240at 267.787 kb on - strand, within IAI47_01240at 267.806 kb on + strand, within IAI47_01240at 267.806 kb on + strand, within IAI47_01240at 267.806 kb on + strand, within IAI47_01240at 267.806 kb on + strand, within IAI47_01240at 267.807 kb on - strand, within IAI47_01240at 267.807 kb on - strand, within IAI47_01240at 267.807 kb on - strand, within IAI47_01240at 267.807 kb on - strand, within IAI47_01240at 267.912 kb on + strandat 267.912 kb on + strandat 267.913 kb on - strandat 267.960 kb on + strandat 267.960 kb on + strandat 267.961 kb on - strandat 267.961 kb on - strandat 268.018 kb on + strandat 268.018 kb on + strandat 268.019 kb on - strandat 268.019 kb on - strandat 268.061 kb on + strandat 268.061 kb on + strandat 268.062 kb on - strandat 268.062 kb on - strandat 268.092 kb on + strandat 268.092 kb on + strandat 268.092 kb on + strandat 268.092 kb on + strandat 268.093 kb on - strandat 268.093 kb on - strandat 268.093 kb on - strandat 268.093 kb on - strandat 268.093 kb on - strandat 268.114 kb on + strand, within IAI47_01245at 268.114 kb on + strand, within IAI47_01245at 268.114 kb on + strand, within IAI47_01245at 268.114 kb on + strand, within IAI47_01245at 268.115 kb on - strand, within IAI47_01245at 268.115 kb on - strand, within IAI47_01245at 268.115 kb on - strand, within IAI47_01245at 268.125 kb on + strand, within IAI47_01245at 268.125 kb on + strand, within IAI47_01245at 268.125 kb on + strand, within IAI47_01245at 268.125 kb on + strand, within IAI47_01245at 268.125 kb on + strand, within IAI47_01245at 268.126 kb on - strand, within IAI47_01245at 268.126 kb on - strand, within IAI47_01245at 268.126 kb on - strand, within IAI47_01245at 268.126 kb on - strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.128 kb on + strand, within IAI47_01245at 268.129 kb on - strand, within IAI47_01245at 268.129 kb on - strand, within IAI47_01245at 268.129 kb on - strand, within IAI47_01245at 268.241 kb on - strand, within IAI47_01245at 268.241 kb on - strand, within IAI47_01245at 268.241 kb on - strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.279 kb on + strand, within IAI47_01245at 268.280 kb on - strand, within IAI47_01245at 268.280 kb on - strand, within IAI47_01245at 268.280 kb on - strand, within IAI47_01245at 268.282 kb on - strand, within IAI47_01245at 268.444 kb on - strand, within IAI47_01245at 268.596 kb on + strandat 268.596 kb on + strandat 268.597 kb on - strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.615 kb on + strandat 268.616 kb on - strandat 268.616 kb on - strandat 268.616 kb on - strandat 268.616 kb on - strandat 268.616 kb on - strandat 268.616 kb on - strandat 268.624 kb on + strandat 268.624 kb on + strandat 268.625 kb on - strandat 268.625 kb on - strandat 268.625 kb on - strandat 268.748 kb on + strandat 268.748 kb on + strandat 268.749 kb on - strandat 268.812 kb on + strandat 268.812 kb on + strandat 268.812 kb on + strandat 268.812 kb on + strandat 268.812 kb on + strandat 268.812 kb on + strandat 268.812 kb on + strandat 268.813 kb on - strandat 268.857 kb on + strandat 268.858 kb on - strandat 268.975 kb on + strand, within IAI47_01250at 269.008 kb on + strand, within IAI47_01250at 269.125 kb on - strand, within IAI47_01250at 269.216 kb on + strand, within IAI47_01250at 269.217 kb on - strand, within IAI47_01250at 269.217 kb on - strand, within IAI47_01250at 269.218 kb on + strand, within IAI47_01250at 269.218 kb on + strand, within IAI47_01250at 269.218 kb on + strand, within IAI47_01250at 269.266 kb on + strand, within IAI47_01250at 269.266 kb on + strand, within IAI47_01250at 269.266 kb on + strand, within IAI47_01250at 269.267 kb on - strand, within IAI47_01250at 269.267 kb on - strand, within IAI47_01250at 269.395 kb on + strand, within IAI47_01250at 269.396 kb on - strand, within IAI47_01250at 269.396 kb on - strand, within IAI47_01250at 269.396 kb on - strand, within IAI47_01250at 269.396 kb on - strand, within IAI47_01250at 269.480 kb on + strand, within IAI47_01250at 269.480 kb on + strand, within IAI47_01250at 269.480 kb on + strand, within IAI47_01250at 269.480 kb on + strand, within IAI47_01250at 269.480 kb on + strand, within IAI47_01250at 269.480 kb on + strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.481 kb on - strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.544 kb on + strand, within IAI47_01250at 269.545 kb on - strand, within IAI47_01250at 269.545 kb on - strand, within IAI47_01250at 269.545 kb on - strand, within IAI47_01250

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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267,053 - IAI47_01240 0.52 +0.7
267,113 + IAI47_01240 0.55 +1.0
267,113 + IAI47_01240 0.55 +0.6
267,114 - IAI47_01240 0.55 +1.5
267,114 - IAI47_01240 0.55 +0.0
267,332 + IAI47_01240 0.65 +0.2
267,332 + IAI47_01240 0.65 +4.2
267,410 + IAI47_01240 0.69 +1.5
267,410 + IAI47_01240 0.69 -0.0
267,411 - IAI47_01240 0.69 -0.1
267,507 + IAI47_01240 0.74 +0.0
267,507 + IAI47_01240 0.74 -0.4
267,686 + IAI47_01240 0.83 -0.2
267,729 - IAI47_01240 0.85 -0.0
267,729 - IAI47_01240 0.85 -0.4
267,729 - IAI47_01240 0.85 -0.1
267,762 - IAI47_01240 0.86 +1.6
267,786 + IAI47_01240 0.88 +0.3
267,787 - IAI47_01240 0.88 +0.1
267,787 - IAI47_01240 0.88 -2.5
267,806 + IAI47_01240 0.89 +0.3
267,806 + IAI47_01240 0.89 -1.3
267,806 + IAI47_01240 0.89 +0.4
267,806 + IAI47_01240 0.89 +0.2
267,807 - IAI47_01240 0.89 -0.0
267,807 - IAI47_01240 0.89 +0.2
267,807 - IAI47_01240 0.89 +0.5
267,807 - IAI47_01240 0.89 +0.1
267,912 + +0.9
267,912 + +1.0
267,913 - -0.2
267,960 + +0.7
267,960 + +0.3
267,961 - +1.6
267,961 - -0.1
268,018 + -1.3
268,018 + -0.5
268,019 - -0.9
268,019 - -0.7
268,061 + -0.1
268,061 + +0.9
268,062 - -0.6
268,062 - -0.3
268,092 + +0.2
268,092 + +0.1
268,092 + +0.5
268,092 + -0.1
268,093 - -0.8
268,093 - -0.1
268,093 - -0.1
268,093 - -0.3
268,093 - -0.9
268,114 + IAI47_01245 0.11 +1.2
268,114 + IAI47_01245 0.11 -1.2
268,114 + IAI47_01245 0.11 +1.9
268,114 + IAI47_01245 0.11 +1.5
268,115 - IAI47_01245 0.11 +0.4
268,115 - IAI47_01245 0.11 +0.5
268,115 - IAI47_01245 0.11 -1.2
268,125 + IAI47_01245 0.13 +0.7
268,125 + IAI47_01245 0.13 -0.8
268,125 + IAI47_01245 0.13 +0.6
268,125 + IAI47_01245 0.13 +2.1
268,125 + IAI47_01245 0.13 -0.5
268,126 - IAI47_01245 0.13 -0.1
268,126 - IAI47_01245 0.13 +0.1
268,126 - IAI47_01245 0.13 -0.5
268,126 - IAI47_01245 0.13 -0.6
268,128 + IAI47_01245 0.14 -1.3
268,128 + IAI47_01245 0.14 +0.2
268,128 + IAI47_01245 0.14 -0.5
268,128 + IAI47_01245 0.14 -0.6
268,128 + IAI47_01245 0.14 +1.9
268,128 + IAI47_01245 0.14 -0.4
268,128 + IAI47_01245 0.14 -0.6
268,129 - IAI47_01245 0.14 +0.2
268,129 - IAI47_01245 0.14 -0.2
268,129 - IAI47_01245 0.14 -0.7
268,241 - IAI47_01245 0.34 -1.5
268,241 - IAI47_01245 0.34 +0.6
268,241 - IAI47_01245 0.34 +0.4
268,279 + IAI47_01245 0.40 +0.7
268,279 + IAI47_01245 0.40 +0.7
268,279 + IAI47_01245 0.40 +0.5
268,279 + IAI47_01245 0.40 -1.0
268,279 + IAI47_01245 0.40 -0.4
268,279 + IAI47_01245 0.40 +0.2
268,279 + IAI47_01245 0.40 -2.4
268,280 - IAI47_01245 0.40 -1.1
268,280 - IAI47_01245 0.40 +0.5
268,280 - IAI47_01245 0.40 -0.1
268,282 - IAI47_01245 0.41 +1.3
268,444 - IAI47_01245 0.69 +0.5
268,596 + -0.0
268,596 + -0.4
268,597 - -0.6
268,615 + -1.0
268,615 + -1.2
268,615 + -0.1
268,615 + -1.6
268,615 + -0.8
268,615 + +0.5
268,615 + -0.5
268,615 + +1.3
268,615 + +0.0
268,615 + +0.6
268,616 - -0.5
268,616 - -0.0
268,616 - -0.3
268,616 - +0.5
268,616 - +0.8
268,616 - -1.5
268,624 + +0.2
268,624 + -1.5
268,625 - +0.2
268,625 - -1.8
268,625 - +0.3
268,748 + +0.6
268,748 + +0.4
268,749 - -0.4
268,812 + +0.4
268,812 + -1.7
268,812 + +0.6
268,812 + +0.5
268,812 + -0.5
268,812 + +1.7
268,812 + +1.1
268,813 - -0.4
268,857 + +2.0
268,858 - -0.3
268,975 + IAI47_01250 0.13 +0.2
269,008 + IAI47_01250 0.14 -1.3
269,125 - IAI47_01250 0.18 -1.6
269,216 + IAI47_01250 0.22 -1.0
269,217 - IAI47_01250 0.22 -1.4
269,217 - IAI47_01250 0.22 +1.2
269,218 + IAI47_01250 0.22 -1.1
269,218 + IAI47_01250 0.22 +3.0
269,218 + IAI47_01250 0.22 +0.3
269,266 + IAI47_01250 0.24 -0.6
269,266 + IAI47_01250 0.24 +0.0
269,266 + IAI47_01250 0.24 -2.2
269,267 - IAI47_01250 0.24 +0.4
269,267 - IAI47_01250 0.24 +1.1
269,395 + IAI47_01250 0.28 +0.7
269,396 - IAI47_01250 0.28 -0.5
269,396 - IAI47_01250 0.28 +1.3
269,396 - IAI47_01250 0.28 +1.2
269,396 - IAI47_01250 0.28 +0.8
269,480 + IAI47_01250 0.32 +0.6
269,480 + IAI47_01250 0.32 -0.9
269,480 + IAI47_01250 0.32 -0.4
269,480 + IAI47_01250 0.32 -2.1
269,480 + IAI47_01250 0.32 +1.0
269,480 + IAI47_01250 0.32 +0.2
269,481 - IAI47_01250 0.32 +1.7
269,481 - IAI47_01250 0.32 +0.9
269,481 - IAI47_01250 0.32 -1.0
269,481 - IAI47_01250 0.32 +0.5
269,481 - IAI47_01250 0.32 -1.2
269,481 - IAI47_01250 0.32 -1.2
269,481 - IAI47_01250 0.32 +0.5
269,544 + IAI47_01250 0.34 -0.6
269,544 + IAI47_01250 0.34 +1.4
269,544 + IAI47_01250 0.34 +0.0
269,544 + IAI47_01250 0.34 +2.1
269,544 + IAI47_01250 0.34 +0.7
269,544 + IAI47_01250 0.34 +0.4
269,544 + IAI47_01250 0.34 +0.5
269,545 - IAI47_01250 0.34 +1.9
269,545 - IAI47_01250 0.34 +1.1
269,545 - IAI47_01250 0.34 +0.4

Or see this region's nucleotide sequence