Strain Fitness in Pantoea sp. MT58 around IAI47_21860

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
121,731	+		IAI47_21855	0.40	+0.7
121,731	+		IAI47_21855	0.40	+0.2
121,731	+		IAI47_21855	0.40	-0.7
121,731	+		IAI47_21855	0.40	-0.3
121,732	-		IAI47_21855	0.40	-0.1
121,732	-		IAI47_21855	0.40	+0.8
121,732	-		IAI47_21855	0.40	-0.5
121,732	-		IAI47_21855	0.40	-1.5
121,732	-		IAI47_21855	0.40	-1.5
121,732	-		IAI47_21855	0.40	-0.1
121,745	+		IAI47_21855	0.40	+0.8
121,745	+		IAI47_21855	0.40	-0.1
121,790	+		IAI47_21855	0.44	+0.5
121,790	+		IAI47_21855	0.44	+0.6
121,791	-		IAI47_21855	0.44	-0.8
121,791	-		IAI47_21855	0.44	+0.4
121,791	-		IAI47_21855	0.44	+0.2
121,791	-		IAI47_21855	0.44	+2.2
121,792	+		IAI47_21855	0.44	-0.0
121,792	+		IAI47_21855	0.44	+0.0
121,792	+		IAI47_21855	0.44	-2.1
121,792	+		IAI47_21855	0.44	-0.3
121,792	+		IAI47_21855	0.44	-0.1
121,793	-		IAI47_21855	0.44	-0.1
121,793	-		IAI47_21855	0.44	-0.4
121,793	-		IAI47_21855	0.44	+2.1
121,793	-		IAI47_21855	0.44	-0.6
121,793	-		IAI47_21855	0.44	+1.2
121,793	-		IAI47_21855	0.44	-0.3
121,793	-		IAI47_21855	0.44	+0.4
121,793	-		IAI47_21855	0.44	-0.1
121,805	+		IAI47_21855	0.45	+0.7
121,806	-		IAI47_21855	0.45	-0.3
121,850	+		IAI47_21855	0.48	+0.1
121,850	+		IAI47_21855	0.48	-0.9
121,851	-		IAI47_21855	0.48	-0.6
121,851	-		IAI47_21855	0.48	-0.9
121,868	-		IAI47_21855	0.49	-0.1
121,870	+		IAI47_21855	0.49	+2.2
121,870	+		IAI47_21855	0.49	+0.2
121,871	-		IAI47_21855	0.49	+2.3
121,871	-		IAI47_21855	0.49	-0.3
121,871	-		IAI47_21855	0.49	+1.4
121,895	+		IAI47_21855	0.51	-0.1
121,895	+		IAI47_21855	0.51	+1.2
121,895	+		IAI47_21855	0.51	+0.1
121,896	-		IAI47_21855	0.51	-0.2
121,896	-		IAI47_21855	0.51	+2.2
121,896	-		IAI47_21855	0.51	+1.4
121,920	+		IAI47_21855	0.53	+1.1
121,920	+		IAI47_21855	0.53	+1.2
121,921	-		IAI47_21855	0.53	+2.2
121,921	-		IAI47_21855	0.53	-0.7
121,938	+		IAI47_21855	0.54	-0.8
121,938	+		IAI47_21855	0.54	-0.1
121,938	+		IAI47_21855	0.54	+0.7
121,938	+		IAI47_21855	0.54	-1.1
121,938	+		IAI47_21855	0.54	-0.6
121,938	+		IAI47_21855	0.54	-0.5
121,938	+		IAI47_21855	0.54	+0.2
121,939	-		IAI47_21855	0.54	+0.1
121,939	-		IAI47_21855	0.54	-0.1
121,939	-		IAI47_21855	0.54	-2.1
121,939	-		IAI47_21855	0.54	+0.5
121,939	-		IAI47_21855	0.54	+0.2
121,940	+		IAI47_21855	0.54	-1.7
121,940	+		IAI47_21855	0.54	-1.8
121,940	+		IAI47_21855	0.54	-1.2
121,940	+		IAI47_21855	0.54	+1.5
121,940	+		IAI47_21855	0.54	-1.7
121,940	+		IAI47_21855	0.54	-0.6
121,940	+		IAI47_21855	0.54	-0.9
121,940	+		IAI47_21855	0.54	+1.6
121,940	+		IAI47_21855	0.54	-2.4
121,940	+		IAI47_21855	0.54	-1.9
121,940	+		IAI47_21855	0.54	+1.5
121,940	+		IAI47_21855	0.54	+0.3
121,941	-		IAI47_21855	0.54	-1.3
121,941	-		IAI47_21855	0.54	-0.3
121,941	-		IAI47_21855	0.54	-0.3
121,941	-		IAI47_21855	0.54	-2.6
121,941	-		IAI47_21855	0.54	+0.4
122,029	+		IAI47_21855	0.61	-0.6
122,041	+		IAI47_21855	0.61	-0.6
122,042	-		IAI47_21855	0.62	+1.6
122,042	-		IAI47_21855	0.62	-0.0
122,042	-		IAI47_21855	0.62	+1.2
122,072	+		IAI47_21855	0.64	-0.8
122,072	+		IAI47_21855	0.64	+0.2
122,072	+		IAI47_21855	0.64	-0.7
122,073	-		IAI47_21855	0.64	-0.6
122,073	-		IAI47_21855	0.64	+1.3
122,073	-		IAI47_21855	0.64	+2.5
122,078	+		IAI47_21855	0.64	+0.8
122,079	-		IAI47_21855	0.64	+0.2
122,121	+		IAI47_21855	0.67	+3.1
122,122	-		IAI47_21855	0.67	+0.8
122,123	+		IAI47_21855	0.67	-0.0
122,124	-		IAI47_21855	0.67	+0.5
122,142	+		IAI47_21855	0.69	+2.0
122,142	+		IAI47_21855	0.69	-1.5
122,239	-		IAI47_21855	0.76	+0.9
122,239	-		IAI47_21855	0.76	-1.5
122,240	+		IAI47_21855	0.76	+0.2
122,241	-		IAI47_21855	0.76	-0.4
122,241	-		IAI47_21855	0.76	+0.8
122,241	-		IAI47_21855	0.76	+2.0
122,241	-		IAI47_21855	0.76	-0.2
122,241	-		IAI47_21855	0.76	+1.1
122,241	-		IAI47_21855	0.76	-0.8
122,285	+		IAI47_21855	0.79	+0.1
122,286	-		IAI47_21855	0.79	+0.2
122,303	+		IAI47_21855	0.80	+2.5
122,303	+		IAI47_21855	0.80	+0.9
122,303	+		IAI47_21855	0.80	+0.3
122,304	-		IAI47_21855	0.80	+1.7
122,417	+		IAI47_21855	0.88	-0.8
122,418	-		IAI47_21855	0.88	-1.0
122,429	+		IAI47_21855	0.89	+0.4
122,429	+		IAI47_21855	0.89	-1.5
122,429	+		IAI47_21855	0.89	-0.1
122,429	+		IAI47_21855	0.89	+0.1
122,429	+		IAI47_21855	0.89	+1.9
122,429	+		IAI47_21855	0.89	+0.1
122,429	+		IAI47_21855	0.89	-2.0
122,429	+		IAI47_21855	0.89	-0.9
122,430	-		IAI47_21855	0.89	+1.2
122,430	-		IAI47_21855	0.89	-1.4
122,449	-				+0.4
122,458	-				+2.0
122,504	+				+0.1
122,532	+				-1.2
122,584	+				-0.5
122,585	-				-1.2
122,585	-				-1.7
122,602	+				-0.8
122,602	+				-1.6
122,602	+				-1.2
122,614	+				-0.5
122,614	+				-0.6
122,614	+				+0.0
122,614	+				+0.9
122,614	+				+1.2
122,615	-				-1.3
122,615	-				-1.1
122,615	-				-1.5
122,636	+				+1.9
122,636	+				-0.2
122,636	+				-1.3
122,637	-				+0.6
122,637	-				-0.0
122,662	+				-0.8
122,662	+				+0.0
122,662	+				+0.7
122,662	+				+3.2
122,662	+				+1.7
122,663	-				-0.2
122,663	-				+0.1
122,663	-				+1.0
122,663	-				-0.5
122,663	-				-0.2
122,663	-				-1.3
122,663	-				-0.1
122,663	-				-0.0
122,729	+		IAI47_21860	0.11	-2.1
122,729	+		IAI47_21860	0.11	-1.3
122,730	-		IAI47_21860	0.11	-1.7
122,730	-		IAI47_21860	0.11	+1.4
122,731	+		IAI47_21860	0.11	-0.1
122,731	+		IAI47_21860	0.11	+1.0
122,731	+		IAI47_21860	0.11	+0.9
122,731	+		IAI47_21860	0.11	-1.8
122,731	+		IAI47_21860	0.11	-2.2
122,731	+		IAI47_21860	0.11	+1.5
122,731	+		IAI47_21860	0.11	+3.6
122,732	-		IAI47_21860	0.11	+0.6
122,732	-		IAI47_21860	0.11	-0.2
122,732	-		IAI47_21860	0.11	-1.5
122,732	-		IAI47_21860	0.11	-1.1
122,732	-		IAI47_21860	0.11	-1.8
122,801	+		IAI47_21860	0.16	-0.7
122,801	+		IAI47_21860	0.16	+0.7
122,801	+		IAI47_21860	0.16	-0.6
122,801	+		IAI47_21860	0.16	-0.9
122,801	+		IAI47_21860	0.16	+1.2
122,802	-		IAI47_21860	0.16	-2.1
122,802	-		IAI47_21860	0.16	-0.3
122,802	-		IAI47_21860	0.16	+2.7
122,802	-		IAI47_21860	0.16	-0.9
122,816	+		IAI47_21860	0.17	+1.7
122,817	-		IAI47_21860	0.17	-1.3
122,847	+		IAI47_21860	0.19	-1.3
122,847	+		IAI47_21860	0.19	+0.6
122,848	-		IAI47_21860	0.19	-1.6
122,997	+		IAI47_21860	0.30	-1.9
122,997	+		IAI47_21860	0.30	+1.9
122,998	-		IAI47_21860	0.30	-0.5
122,998	-		IAI47_21860	0.30	-2.2
122,998	-		IAI47_21860	0.30	+1.0
123,023	+		IAI47_21860	0.32	+0.3
123,023	+		IAI47_21860	0.32	+1.0
123,023	+		IAI47_21860	0.32	-1.3
123,023	+		IAI47_21860	0.32	+0.9
123,023	+		IAI47_21860	0.32	+3.0
123,024	-		IAI47_21860	0.32	+1.0
123,024	-		IAI47_21860	0.32	+0.1
123,024	-		IAI47_21860	0.32	+0.5
123,024	-		IAI47_21860	0.32	-2.0
123,024	-				+0.7
123,024	-		IAI47_21860	0.32	+1.9
123,056	-		IAI47_21860	0.35	-1.8
123,056	-		IAI47_21860	0.35	-1.0
123,056	-		IAI47_21860	0.35	+0.7
123,069	+		IAI47_21860	0.35	+1.6
123,069	+		IAI47_21860	0.35	+0.1
123,069	+		IAI47_21860	0.35	-0.6
123,069	+		IAI47_21860	0.35	+0.2
123,069	+		IAI47_21860	0.35	+2.5
123,069	+		IAI47_21860	0.35	-0.3
123,070	-		IAI47_21860	0.36	-0.2
123,070	-		IAI47_21860	0.36	-0.2
123,140	+		IAI47_21860	0.41	-1.3
123,141	-		IAI47_21860	0.41	-0.8
123,141	-		IAI47_21860	0.41	+1.7
123,141	-		IAI47_21860	0.41	+2.5
123,158	+		IAI47_21860	0.42	+1.4
123,158	+		IAI47_21860	0.42	-1.8
123,159	-		IAI47_21860	0.42	-1.0
123,159	-		IAI47_21860	0.42	-0.9
123,165	+		IAI47_21860	0.42	-0.6
123,165	+		IAI47_21860	0.42	-2.4
123,165	+		IAI47_21860	0.42	+1.2
123,185	+		IAI47_21860	0.44	-0.8
123,185	+		IAI47_21860	0.44	-1.7
123,185	+		IAI47_21860	0.44	-1.4
123,186	-		IAI47_21860	0.44	-1.3
123,186	-		IAI47_21860	0.44	+1.2
123,186	-		IAI47_21860	0.44	-0.0
123,231	+		IAI47_21860	0.47	-2.5
123,234	+		IAI47_21860	0.47	+1.1
123,235	-		IAI47_21860	0.48	+0.2
123,243	+		IAI47_21860	0.48	+0.8
123,243	+		IAI47_21860	0.48	+1.4
123,243	+		IAI47_21860	0.48	+0.9
123,243	+		IAI47_21860	0.48	+0.8
123,243	+		IAI47_21860	0.48	-0.1
123,244	-		IAI47_21860	0.48	+0.6
123,244	-		IAI47_21860	0.48	+0.1
123,244	-		IAI47_21860	0.48	-2.3
123,244	-		IAI47_21860	0.48	-1.1
123,244	-		IAI47_21860	0.48	+0.1
123,244	-		IAI47_21860	0.48	-0.1
123,244	-		IAI47_21860	0.48	+0.6
123,244	-		IAI47_21860	0.48	+1.1
123,295	-		IAI47_21860	0.52	+2.2
123,295	-		IAI47_21860	0.52	+0.5
123,308	-		IAI47_21860	0.53	+1.0
123,479	+		IAI47_21860	0.65	+1.3
123,479	+		IAI47_21860	0.65	-1.5
123,480	-		IAI47_21860	0.65	+0.9
123,480	-		IAI47_21860	0.65	+0.2
123,480	-		IAI47_21860	0.65	-0.2
123,480	-		IAI47_21860	0.65	-0.8
123,482	+		IAI47_21860	0.66	-0.2
123,483	-		IAI47_21860	0.66	-0.2
123,483	-		IAI47_21860	0.66	+0.0
123,483	-		IAI47_21860	0.66	-0.6
123,503	+		IAI47_21860	0.67	+1.7
123,503	+		IAI47_21860	0.67	+0.4
123,503	+		IAI47_21860	0.67	+1.6
123,504	-		IAI47_21860	0.67	+0.4
123,504	-		IAI47_21860	0.67	-1.7
123,504	-		IAI47_21860	0.67	-1.0
123,504	-		IAI47_21860	0.67	-0.9
123,504	-		IAI47_21860	0.67	+1.7
123,504	-		IAI47_21860	0.67	-2.6
123,505	-		IAI47_21860	0.67	+3.5
123,517	+		IAI47_21860	0.68	+0.7
123,517	+		IAI47_21860	0.68	+0.4
123,517	+		IAI47_21860	0.68	-0.6
123,517	+		IAI47_21860	0.68	-0.8
123,517	+		IAI47_21860	0.68	-1.5
123,517	+		IAI47_21860	0.68	-2.3
123,517	+		IAI47_21860	0.68	-0.5
123,517	+		IAI47_21860	0.68	-0.9
123,518	-		IAI47_21860	0.68	+1.7
123,518	-		IAI47_21860	0.68	+0.2
123,518	-		IAI47_21860	0.68	+0.4
123,518	-		IAI47_21860	0.68	-0.1
123,518	-		IAI47_21860	0.68	-1.2
123,518	-		IAI47_21860	0.68	-0.2
123,518	-		IAI47_21860	0.68	+1.6
123,518	-		IAI47_21860	0.68	-0.1
123,547	+		IAI47_21860	0.70	+0.2
123,548	-		IAI47_21860	0.70	+0.8
123,656	+		IAI47_21860	0.78	-0.1
123,657	-		IAI47_21860	0.78	+0.4
123,657	-		IAI47_21860	0.78	+0.1
123,657	-		IAI47_21860	0.78	-1.8
123,657	-		IAI47_21860	0.78	+0.5
123,674	+		IAI47_21860	0.80	-0.6
123,674	+		IAI47_21860	0.80	+0.1
123,675	-		IAI47_21860	0.80	+0.7
123,704	+		IAI47_21860	0.82	-0.5
123,733	+		IAI47_21860	0.84	+0.2
123,734	-		IAI47_21860	0.84	+1.5
123,744	+		IAI47_21860	0.85	-2.7
123,744	+		IAI47_21860	0.85	-0.1
123,745	-		IAI47_21860	0.85	+0.5
123,745	-		IAI47_21860	0.85	-0.3
123,745	-		IAI47_21860	0.85	-1.1
123,745	-		IAI47_21860	0.85	+0.0
123,764	+		IAI47_21860	0.86	-0.2
123,765	-		IAI47_21860	0.86	+2.0
123,765	-		IAI47_21860	0.86	+1.8
123,785	+		IAI47_21860	0.88	-1.6
123,800	+		IAI47_21860	0.89	+1.3
123,828	-				+0.8
123,905	+				+0.0
123,905	+				+1.7
123,905	+				+0.6
123,906	-				+0.4
123,906	-				+0.8
123,925	-				+2.0
123,942	+				-2.9
123,943	-				-1.1
123,943	-				-0.1
123,943	-				-1.7
123,946	+				+0.2
123,946	+				-0.2
123,946	+				+0.9
123,946	+				-0.6
123,946	+				+0.9
123,946	+				+1.8
123,947	-				-0.9
123,947	-				+0.4
123,947	-				-0.6
123,947	-				-0.2
123,947	-				-0.1
123,953	+				+0.8
123,953	+				-0.3
123,953	+				-0.7
123,953	+				-1.3
123,954	-				+0.9
123,955	+				-0.2
123,955	+				+0.9
123,955	+				+1.0
123,955	+				+0.2
123,955	+				-0.1
123,955	+				+1.8
123,955	+				-0.3
123,955	+				-2.6
123,955	+				-0.6
123,955	+				+0.9
123,955	+				-0.8
123,955	+				-1.1
123,955	+				-0.3
123,956	-				-0.3
123,956	-				-2.7
123,956	-				+0.4
123,956	-				-0.2
123,956	-				+1.2
123,956	-				-1.3
123,956	-				-1.1
123,956	-				+0.4
123,956	-				-2.7
123,956	-				-1.3
123,956	-				+0.4
123,956	-				-0.9
123,956	-				+3.3
123,956	-				-0.5
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