Strain Fitness in Pantoea sp. MT58 around IAI47_21280

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21270 and IAI47_21275 are separated by 9 nucleotidesIAI47_21275 and IAI47_21280 are separated by 6 nucleotidesIAI47_21280 and IAI47_21285 are separated by 21 nucleotides IAI47_21270: IAI47_21270 - ABC transporter permease subunit, at 510,477 to 511,163 _21270 IAI47_21275: IAI47_21275 - ABC transporter permease subunit, at 511,173 to 511,898 _21275 IAI47_21280: IAI47_21280 - amino acid ABC transporter substrate-binding protein, at 511,905 to 512,753 _21280 IAI47_21285: IAI47_21285 - amidohydrolase, at 512,775 to 513,962 _21285 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 510.918 kb on - strand, within IAI47_21270at 510.918 kb on - strand, within IAI47_21270at 510.918 kb on - strand, within IAI47_21270at 510.952 kb on + strand, within IAI47_21270at 510.952 kb on + strand, within IAI47_21270at 510.952 kb on + strand, within IAI47_21270at 510.953 kb on - strand, within IAI47_21270at 510.959 kb on + strand, within IAI47_21270at 510.959 kb on + strand, within IAI47_21270at 510.984 kb on - strand, within IAI47_21270at 511.004 kb on - strand, within IAI47_21270at 511.049 kb on + strand, within IAI47_21270at 511.049 kb on + strand, within IAI47_21270at 511.100 kb on + strandat 511.100 kb on + strandat 511.100 kb on + strandat 511.100 kb on + strandat 511.101 kb on - strandat 511.146 kb on + strandat 511.146 kb on + strandat 511.146 kb on + strandat 511.147 kb on - strandat 511.174 kb on + strandat 511.175 kb on - strandat 511.250 kb on + strand, within IAI47_21275at 511.258 kb on + strand, within IAI47_21275at 511.259 kb on - strand, within IAI47_21275at 511.259 kb on - strand, within IAI47_21275at 511.279 kb on + strand, within IAI47_21275at 511.280 kb on - strand, within IAI47_21275at 511.280 kb on - strand, within IAI47_21275at 511.376 kb on + strand, within IAI47_21275at 511.436 kb on + strand, within IAI47_21275at 511.436 kb on + strand, within IAI47_21275at 511.436 kb on + strand, within IAI47_21275at 511.437 kb on - strand, within IAI47_21275at 511.437 kb on - strand, within IAI47_21275at 511.437 kb on - strand, within IAI47_21275at 511.510 kb on + strand, within IAI47_21275at 511.511 kb on - strand, within IAI47_21275at 511.541 kb on - strand, within IAI47_21275at 511.563 kb on - strand, within IAI47_21275at 511.657 kb on + strand, within IAI47_21275at 511.666 kb on + strand, within IAI47_21275at 511.667 kb on - strand, within IAI47_21275at 511.708 kb on + strand, within IAI47_21275at 511.709 kb on - strand, within IAI47_21275at 511.709 kb on - strand, within IAI47_21275at 511.765 kb on - strand, within IAI47_21275at 511.806 kb on + strand, within IAI47_21275at 511.817 kb on + strand, within IAI47_21275at 511.817 kb on + strand, within IAI47_21275at 511.818 kb on - strand, within IAI47_21275at 511.873 kb on - strandat 511.873 kb on - strandat 511.886 kb on + strandat 511.886 kb on + strandat 511.886 kb on + strandat 511.886 kb on + strandat 511.887 kb on - strandat 511.887 kb on - strandat 511.906 kb on + strandat 511.906 kb on + strandat 511.906 kb on + strandat 511.906 kb on + strandat 512.084 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.197 kb on + strand, within IAI47_21280at 512.227 kb on + strand, within IAI47_21280at 512.285 kb on + strand, within IAI47_21280at 512.419 kb on + strand, within IAI47_21280at 512.420 kb on - strand, within IAI47_21280at 512.488 kb on + strand, within IAI47_21280at 512.488 kb on + strand, within IAI47_21280at 512.488 kb on + strand, within IAI47_21280at 512.489 kb on - strand, within IAI47_21280at 512.489 kb on - strand, within IAI47_21280at 512.489 kb on - strand, within IAI47_21280at 512.489 kb on - strand, within IAI47_21280at 512.492 kb on + strand, within IAI47_21280at 512.493 kb on - strand, within IAI47_21280at 512.493 kb on - strand, within IAI47_21280at 512.545 kb on + strand, within IAI47_21280at 512.549 kb on + strand, within IAI47_21280at 512.550 kb on - strand, within IAI47_21280at 512.550 kb on - strand, within IAI47_21280at 512.550 kb on - strand, within IAI47_21280at 512.550 kb on - strand, within IAI47_21280at 512.593 kb on + strand, within IAI47_21280at 512.594 kb on - strand, within IAI47_21280at 512.594 kb on - strand, within IAI47_21280at 512.594 kb on - strand, within IAI47_21280at 512.618 kb on + strand, within IAI47_21280at 512.627 kb on + strand, within IAI47_21280at 512.638 kb on + strand, within IAI47_21280at 512.639 kb on - strand, within IAI47_21280at 512.753 kb on + strandat 512.753 kb on + strandat 512.754 kb on - strandat 512.754 kb on - strandat 512.754 kb on - strandat 512.754 kb on - strandat 512.754 kb on - strandat 512.766 kb on + strandat 512.766 kb on + strandat 512.766 kb on + strandat 512.766 kb on + strandat 512.766 kb on + strandat 512.766 kb on + strandat 512.767 kb on - strandat 512.767 kb on - strandat 512.774 kb on - strandat 512.776 kb on + strandat 512.777 kb on - strandat 512.789 kb on - strandat 512.825 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.859 kb on - strandat 512.897 kb on + strand, within IAI47_21285at 513.043 kb on - strand, within IAI47_21285at 513.119 kb on + strand, within IAI47_21285at 513.119 kb on + strand, within IAI47_21285at 513.120 kb on - strand, within IAI47_21285at 513.200 kb on + strand, within IAI47_21285at 513.200 kb on + strand, within IAI47_21285at 513.201 kb on - strand, within IAI47_21285at 513.201 kb on - strand, within IAI47_21285at 513.201 kb on - strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.296 kb on + strand, within IAI47_21285at 513.316 kb on - strand, within IAI47_21285at 513.357 kb on + strand, within IAI47_21285at 513.357 kb on + strand, within IAI47_21285at 513.366 kb on + strand, within IAI47_21285at 513.367 kb on - strand, within IAI47_21285at 513.367 kb on - strand, within IAI47_21285at 513.449 kb on + strand, within IAI47_21285at 513.449 kb on + strand, within IAI47_21285at 513.450 kb on - strand, within IAI47_21285at 513.450 kb on - strand, within IAI47_21285at 513.563 kb on + strand, within IAI47_21285at 513.564 kb on - strand, within IAI47_21285at 513.564 kb on - strand, within IAI47_21285at 513.585 kb on + strand, within IAI47_21285at 513.585 kb on + strand, within IAI47_21285at 513.585 kb on + strand, within IAI47_21285at 513.586 kb on - strand, within IAI47_21285at 513.586 kb on - strand, within IAI47_21285at 513.586 kb on - strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.588 kb on + strand, within IAI47_21285at 513.589 kb on - strand, within IAI47_21285at 513.624 kb on - strand, within IAI47_21285at 513.624 kb on - strand, within IAI47_21285

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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510,918 - IAI47_21270 0.64 +0.6
510,918 - IAI47_21270 0.64 -1.0
510,918 - IAI47_21270 0.64 +1.8
510,952 + IAI47_21270 0.69 +0.8
510,952 + IAI47_21270 0.69 +0.5
510,952 + IAI47_21270 0.69 +1.2
510,953 - IAI47_21270 0.69 +0.2
510,959 + IAI47_21270 0.70 -0.2
510,959 + IAI47_21270 0.70 -2.8
510,984 - IAI47_21270 0.74 +0.7
511,004 - IAI47_21270 0.77 +1.4
511,049 + IAI47_21270 0.83 -0.2
511,049 + IAI47_21270 0.83 -0.1
511,100 + -1.3
511,100 + -0.7
511,100 + +0.8
511,100 + +0.6
511,101 - +0.6
511,146 + +2.2
511,146 + +0.7
511,146 + -1.5
511,147 - +3.4
511,174 + +0.7
511,175 - -0.4
511,250 + IAI47_21275 0.11 +1.1
511,258 + IAI47_21275 0.12 -1.4
511,259 - IAI47_21275 0.12 -0.5
511,259 - IAI47_21275 0.12 -0.2
511,279 + IAI47_21275 0.15 +0.8
511,280 - IAI47_21275 0.15 +0.9
511,280 - IAI47_21275 0.15 -0.8
511,376 + IAI47_21275 0.28 -1.4
511,436 + IAI47_21275 0.36 +0.3
511,436 + IAI47_21275 0.36 -0.7
511,436 + IAI47_21275 0.36 -0.7
511,437 - IAI47_21275 0.36 +1.1
511,437 - IAI47_21275 0.36 +0.2
511,437 - IAI47_21275 0.36 -0.6
511,510 + IAI47_21275 0.46 -0.5
511,511 - IAI47_21275 0.47 +0.6
511,541 - IAI47_21275 0.51 -0.3
511,563 - IAI47_21275 0.54 +0.3
511,657 + IAI47_21275 0.67 -1.4
511,666 + IAI47_21275 0.68 -1.8
511,667 - IAI47_21275 0.68 +0.9
511,708 + IAI47_21275 0.74 +0.7
511,709 - IAI47_21275 0.74 -1.9
511,709 - IAI47_21275 0.74 +0.6
511,765 - IAI47_21275 0.82 +0.5
511,806 + IAI47_21275 0.87 -0.8
511,817 + IAI47_21275 0.89 +1.0
511,817 + IAI47_21275 0.89 +0.0
511,818 - IAI47_21275 0.89 -0.8
511,873 - -0.1
511,873 - -1.3
511,886 + -0.2
511,886 + -0.5
511,886 + +1.1
511,886 + +0.6
511,887 - -0.8
511,887 - -0.4
511,906 + +0.4
511,906 + -1.4
511,906 + +1.2
511,906 + -0.9
512,084 + IAI47_21280 0.21 -1.0
512,197 + IAI47_21280 0.34 +1.2
512,197 + IAI47_21280 0.34 -1.2
512,197 + IAI47_21280 0.34 -0.5
512,197 + IAI47_21280 0.34 +0.8
512,197 + IAI47_21280 0.34 -0.2
512,197 + IAI47_21280 0.34 -1.3
512,197 + IAI47_21280 0.34 -0.1
512,227 + IAI47_21280 0.38 -0.1
512,285 + IAI47_21280 0.45 +0.6
512,419 + IAI47_21280 0.61 +0.1
512,420 - IAI47_21280 0.61 +0.6
512,488 + IAI47_21280 0.69 +1.8
512,488 + IAI47_21280 0.69 -0.4
512,488 + IAI47_21280 0.69 +1.7
512,489 - IAI47_21280 0.69 -1.5
512,489 - IAI47_21280 0.69 -0.8
512,489 - IAI47_21280 0.69 +0.4
512,489 - IAI47_21280 0.69 +0.6
512,492 + IAI47_21280 0.69 +0.9
512,493 - IAI47_21280 0.69 +0.3
512,493 - IAI47_21280 0.69 -2.1
512,545 + IAI47_21280 0.75 -1.3
512,549 + IAI47_21280 0.76 -0.3
512,550 - IAI47_21280 0.76 +0.9
512,550 - IAI47_21280 0.76 -0.1
512,550 - IAI47_21280 0.76 +0.0
512,550 - IAI47_21280 0.76 +0.7
512,593 + IAI47_21280 0.81 -1.5
512,594 - IAI47_21280 0.81 -0.4
512,594 - IAI47_21280 0.81 -0.8
512,594 - IAI47_21280 0.81 +0.2
512,618 + IAI47_21280 0.84 -1.3
512,627 + IAI47_21280 0.85 -1.4
512,638 + IAI47_21280 0.86 -0.2
512,639 - IAI47_21280 0.86 +0.7
512,753 + -2.2
512,753 + +0.2
512,754 - -0.2
512,754 - -0.1
512,754 - +2.7
512,754 - +0.3
512,754 - +0.1
512,766 + -0.2
512,766 + -1.5
512,766 + -1.0
512,766 + +0.9
512,766 + -1.4
512,766 + -1.3
512,767 - -1.0
512,767 - -0.0
512,774 - +0.5
512,776 + -1.3
512,777 - -0.4
512,789 - -0.1
512,825 + +4.6
512,858 + -1.2
512,858 + -2.7
512,858 + -1.8
512,859 - -0.2
512,897 + IAI47_21285 0.10 -0.5
513,043 - IAI47_21285 0.23 +0.4
513,119 + IAI47_21285 0.29 -0.2
513,119 + IAI47_21285 0.29 +1.1
513,120 - IAI47_21285 0.29 -3.2
513,200 + IAI47_21285 0.36 +2.4
513,200 + IAI47_21285 0.36 +0.3
513,201 - IAI47_21285 0.36 -0.3
513,201 - IAI47_21285 0.36 -0.3
513,201 - IAI47_21285 0.36 +1.2
513,296 + IAI47_21285 0.44 -0.9
513,296 + IAI47_21285 0.44 +0.6
513,296 + IAI47_21285 0.44 -0.8
513,296 + IAI47_21285 0.44 -0.2
513,296 + IAI47_21285 0.44 -0.2
513,316 - IAI47_21285 0.46 -0.4
513,357 + IAI47_21285 0.49 +0.7
513,357 + IAI47_21285 0.49 -1.4
513,366 + IAI47_21285 0.50 -0.8
513,367 - IAI47_21285 0.50 -1.8
513,367 - IAI47_21285 0.50 -0.7
513,449 + IAI47_21285 0.57 -0.9
513,449 + IAI47_21285 0.57 +0.2
513,450 - IAI47_21285 0.57 +0.1
513,450 - IAI47_21285 0.57 -0.8
513,563 + IAI47_21285 0.66 +1.9
513,564 - IAI47_21285 0.66 -2.9
513,564 - IAI47_21285 0.66 -1.4
513,585 + IAI47_21285 0.68 +1.0
513,585 + IAI47_21285 0.68 +0.3
513,585 + IAI47_21285 0.68 -0.7
513,586 - IAI47_21285 0.68 -0.3
513,586 - IAI47_21285 0.68 +0.2
513,586 - IAI47_21285 0.68 -1.3
513,588 + IAI47_21285 0.68 -2.4
513,588 + IAI47_21285 0.68 -1.7
513,588 + IAI47_21285 0.68 -0.3
513,588 + IAI47_21285 0.68 -1.6
513,589 - IAI47_21285 0.69 +0.3
513,624 - IAI47_21285 0.71 +2.5
513,624 - IAI47_21285 0.71 -2.4

Or see this region's nucleotide sequence