Strain Fitness in Pantoea sp. MT58 around IAI47_21225

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
501,077	+		IAI47_21220	0.64	+0.5
501,078	-		IAI47_21220	0.64	+0.4
501,078	-		IAI47_21220	0.64	-0.5
501,169	+		IAI47_21220	0.72	+1.6
501,169	+		IAI47_21220	0.72	+1.7
501,169	+		IAI47_21220	0.72	-0.4
501,169	+		IAI47_21220	0.72	+2.7
501,169	+		IAI47_21220	0.72	-3.1
501,169	+		IAI47_21220	0.72	-1.9
501,169	+		IAI47_21220	0.72	+0.0
501,169	+		IAI47_21220	0.72	-1.3
501,169	+		IAI47_21220	0.72	+0.8
501,169	+		IAI47_21220	0.72	+0.1
501,169	+		IAI47_21220	0.72	-0.4
501,170	-		IAI47_21220	0.72	-0.2
501,170	-		IAI47_21220	0.72	+3.3
501,170	-		IAI47_21220	0.72	-0.2
501,170	-		IAI47_21220	0.72	-0.4
501,170	-		IAI47_21220	0.72	+0.1
501,170	-		IAI47_21220	0.72	+0.2
501,170	-		IAI47_21220	0.72	-0.3
501,170	-		IAI47_21220	0.72	+1.3
501,170	-		IAI47_21220	0.72	+1.6
501,170	-		IAI47_21220	0.72	-0.2
501,170	-		IAI47_21220	0.72	+3.5
501,173	-		IAI47_21220	0.72	-1.9
501,183	-		IAI47_21220	0.73	+0.6
501,211	-		IAI47_21220	0.76	+0.2
501,211	-		IAI47_21220	0.76	-0.2
501,319	-		IAI47_21220	0.85	+1.3
501,357	+		IAI47_21220	0.88	+1.1
501,358	-		IAI47_21220	0.88	+0.3
501,378	+		IAI47_21220	0.90	+0.2
501,388	-				-0.7
501,414	+				+1.0
501,493	+				-1.5
501,493	+				-0.5
501,493	+				+0.8
501,493	+				-0.4
501,494	-				+1.2
501,494	-				-0.0
501,494	-				+0.0
501,494	-				-0.2
501,506	+				-2.5
501,538	-				-0.8
501,538	-				+1.3
501,574	+				+0.5
501,587	+				-0.0
501,591	-				+0.3
501,591	-				-1.3
501,593	+				-2.2
501,593	+				-0.5
501,594	-				-1.7
501,602	+				-0.9
501,602	+				-1.3
501,603	-				-0.4
501,628	+				-1.3
501,628	+				-0.7
501,629	-				+1.3
501,634	-				-1.9
501,635	+				-0.2
501,635	+				+0.9
501,650	+				-0.3
501,651	-				+0.7
501,680	-				+0.0
501,680	-				-2.0
501,680	-				-0.7
501,683	+				-0.8
501,683	+				-1.5
501,683	+				+1.2
501,683	+				+2.3
501,683	+				+1.3
501,684	-				-0.4
501,684	-				-0.4
501,684	-				+1.2
501,684	-				-0.7
501,701	-				+0.8
501,736	-				-0.3
501,759	+				-1.2
501,805	+				+0.0
501,907	+				+0.1
501,908	-				+0.6
501,916	+				-0.5
501,982	+				+1.2
501,982	+				-0.7
501,982	+				-2.3
501,983	-				-0.2
502,006	-				+0.7
502,048	-				-1.2
502,048	-				-0.9
502,061	+				+3.1
502,072	+				+0.8
502,074	+				+0.5
502,074	+				-0.2
502,075	-				-0.0
502,075	-				-0.7
502,075	-				+0.2
502,115	-				-2.1
502,123	-				+0.3
502,123	-				-0.2
502,123	-				+0.2
502,125	-				+1.2
502,125	-				+0.0
502,125	-				-0.7
502,141	-				-0.1
502,141	-				-0.5
502,147	+				+1.4
502,191	+		IAI47_21225	0.11	+0.4
502,191	+		IAI47_21225	0.11	-1.6
502,192	-		IAI47_21225	0.11	+1.2
502,192	-		IAI47_21225	0.11	-1.2
502,192	-		IAI47_21225	0.11	+0.0
502,194	+		IAI47_21225	0.11	+1.9
502,194	+		IAI47_21225	0.11	-1.3
502,195	-		IAI47_21225	0.11	-0.8
502,195	-		IAI47_21225	0.11	-0.4
502,195	-		IAI47_21225	0.11	-0.0
502,195	-		IAI47_21225	0.11	-1.7
502,235	+		IAI47_21225	0.14	+1.5
502,235	+		IAI47_21225	0.14	-1.0
502,276	+		IAI47_21225	0.16	+1.2
502,276	+		IAI47_21225	0.16	+1.4
502,277	-		IAI47_21225	0.16	+1.3
502,277	-		IAI47_21225	0.16	-0.4
502,282	-		IAI47_21225	0.17	-1.4
502,282	-		IAI47_21225	0.17	-0.1
502,282	-		IAI47_21225	0.17	-0.7
502,291	+		IAI47_21225	0.17	+0.4
502,292	-		IAI47_21225	0.17	-1.5
502,326	+		IAI47_21225	0.19	-1.2
502,326	+		IAI47_21225	0.19	-0.9
502,326	+		IAI47_21225	0.19	-1.4
502,327	-		IAI47_21225	0.19	-0.4
502,327	-		IAI47_21225	0.19	+2.3
502,327	-		IAI47_21225	0.19	+2.7
502,327	-		IAI47_21225	0.19	-1.8
502,336	-		IAI47_21225	0.20	+2.7
502,353	+		IAI47_21225	0.21	+0.2
502,354	-		IAI47_21225	0.21	-0.3
502,354	-		IAI47_21225	0.21	-0.5
502,408	-		IAI47_21225	0.24	-0.7
502,438	-		IAI47_21225	0.26	-2.2
502,508	+		IAI47_21225	0.30	-0.8
502,517	+		IAI47_21225	0.31	-0.4
502,517	+		IAI47_21225	0.31	+1.2
502,517	+		IAI47_21225	0.31	+1.0
502,518	-		IAI47_21225	0.31	-2.2
502,518	-		IAI47_21225	0.31	-0.4
502,531	+		IAI47_21225	0.32	+1.2
502,532	-		IAI47_21225	0.32	-1.0
502,533	+		IAI47_21225	0.32	+0.2
502,533	+		IAI47_21225	0.32	+0.0
502,540	+		IAI47_21225	0.32	+0.6
502,540	+		IAI47_21225	0.32	-1.2
502,618	+		IAI47_21225	0.37	+1.2
502,619	-		IAI47_21225	0.37	-0.4
502,619	-		IAI47_21225	0.37	-0.4
502,619	-		IAI47_21225	0.37	-0.4
502,621	+		IAI47_21225	0.37	-1.1
502,621	+		IAI47_21225	0.37	-2.5
502,621	+		IAI47_21225	0.37	-1.3
502,622	-		IAI47_21225	0.37	+0.9
502,695	+		IAI47_21225	0.42	+0.2
502,695	+		IAI47_21225	0.42	+0.2
502,696	-		IAI47_21225	0.42	-2.0
502,696	-		IAI47_21225	0.42	-0.6
502,696	-		IAI47_21225	0.42	+0.4
502,817	-		IAI47_21225	0.49	+0.8
502,817	-		IAI47_21225	0.49	+1.2
502,897	+		IAI47_21225	0.54	-0.5
502,897	+		IAI47_21225	0.54	-1.0
502,897	+		IAI47_21225	0.54	-0.4
502,898	-		IAI47_21225	0.54	-1.4
502,898	-		IAI47_21225	0.54	-0.5
502,967	+		IAI47_21225	0.58	-0.4
502,967	+		IAI47_21225	0.58	-0.4
502,967	+		IAI47_21225	0.58	-0.7
502,967	+		IAI47_21225	0.58	+0.7
502,967	+		IAI47_21225	0.58	+2.2
502,967	+		IAI47_21225	0.58	+0.2
502,968	-		IAI47_21225	0.58	-0.3
502,968	-		IAI47_21225	0.58	-0.2
502,968	-		IAI47_21225	0.58	-1.1
502,968	-		IAI47_21225	0.58	+0.5
502,968	-		IAI47_21225	0.58	+1.8
503,017	-		IAI47_21225	0.61	+0.5
503,026	-		IAI47_21225	0.62	-0.8
503,071	+		IAI47_21225	0.65	+1.5
503,071	+		IAI47_21225	0.65	+0.8
503,072	-		IAI47_21225	0.65	+1.1
503,072	-		IAI47_21225	0.65	+0.6
503,072	-		IAI47_21225	0.65	-1.0
503,072	-		IAI47_21225	0.65	+1.7
503,072	-		IAI47_21225	0.65	+0.3
503,072	-		IAI47_21225	0.65	-1.1
503,104	+		IAI47_21225	0.67	-0.5
503,104	+		IAI47_21225	0.67	-1.0
503,104	+		IAI47_21225	0.67	-1.0
503,104	+		IAI47_21225	0.67	+1.0
503,104	+		IAI47_21225	0.67	+1.0
503,104	+		IAI47_21225	0.67	+0.1
503,104	+		IAI47_21225	0.67	-1.8
503,104	+		IAI47_21225	0.67	+0.3
503,104	+		IAI47_21225	0.67	-0.1
503,104	+		IAI47_21225	0.67	-2.0
503,104	+		IAI47_21225	0.67	-1.5
503,104	+		IAI47_21225	0.67	+0.9
503,105	-		IAI47_21225	0.67	-0.3
503,105	-		IAI47_21225	0.67	-0.3
503,105	-		IAI47_21225	0.67	+1.8
503,105	-		IAI47_21225	0.67	+1.9
503,105	-		IAI47_21225	0.67	-0.9
503,105	-		IAI47_21225	0.67	-0.9
503,106	+		IAI47_21225	0.67	-1.2
503,106	+		IAI47_21225	0.67	+0.7
503,106	+		IAI47_21225	0.67	+0.3
503,106	+		IAI47_21225	0.67	-0.7
503,106	+		IAI47_21225	0.67	-0.7
503,106	+		IAI47_21225	0.67	-1.1
503,106	+		IAI47_21225	0.67	-1.8
503,107	-		IAI47_21225	0.67	-0.3
503,107	-		IAI47_21225	0.67	-0.0
503,127	+		IAI47_21225	0.68	+0.8
503,128	-		IAI47_21225	0.68	+0.9
503,128	-		IAI47_21225	0.68	-1.4
503,128	-		IAI47_21225	0.68	+1.0
503,170	+		IAI47_21225	0.71	+0.0
503,170	+		IAI47_21225	0.71	-0.1
503,171	-		IAI47_21225	0.71	-0.4
503,171	-		IAI47_21225	0.71	+1.0
503,171	-		IAI47_21225	0.71	+0.7
503,171	-		IAI47_21225	0.71	+1.2
503,206	-		IAI47_21225	0.73	+1.9
503,223	+		IAI47_21225	0.74	+1.6
503,224	-		IAI47_21225	0.74	-0.9
503,224	-		IAI47_21225	0.74	-0.9
503,259	+		IAI47_21225	0.76	+0.0
503,262	+		IAI47_21225	0.76	-1.8
503,262	+		IAI47_21225	0.76	+1.3
503,262	+		IAI47_21225	0.76	+0.2
503,262	+		IAI47_21225	0.76	+1.5
503,262	+		IAI47_21225	0.76	-0.3
503,262	+		IAI47_21225	0.76	-1.2
503,263	-		IAI47_21225	0.76	-2.8
503,263	-		IAI47_21225	0.76	-1.5
503,263	-		IAI47_21225	0.76	-0.5
503,263	-		IAI47_21225	0.76	+0.4
503,263	-		IAI47_21225	0.76	-0.9
503,263	-		IAI47_21225	0.76	-0.4
503,263	-		IAI47_21225	0.76	-2.1
503,263	-		IAI47_21225	0.76	+2.2
503,263	-		IAI47_21225	0.76	-0.2
503,266	+		IAI47_21225	0.76	+1.4
503,266	+		IAI47_21225	0.76	-1.3
503,266	+		IAI47_21225	0.76	+1.0
503,267	-		IAI47_21225	0.76	+1.1
503,267	-		IAI47_21225	0.76	-1.2
503,267	-		IAI47_21225	0.76	+1.5
503,284	+		IAI47_21225	0.77	+1.8
503,285	-		IAI47_21225	0.78	-0.4
503,293	+		IAI47_21225	0.78	+0.3
503,293	+		IAI47_21225	0.78	-1.0
503,293	+		IAI47_21225	0.78	-0.0
503,294	-		IAI47_21225	0.78	-0.8
503,294	-		IAI47_21225	0.78	+0.8
503,294	-		IAI47_21225	0.78	+0.7
503,294	-		IAI47_21225	0.78	-1.0
503,295	+		IAI47_21225	0.78	-0.7
503,296	-		IAI47_21225	0.78	+1.2
503,296	-		IAI47_21225	0.78	+0.3
503,304	+		IAI47_21225	0.79	+0.0
503,359	+		IAI47_21225	0.82	+2.1
503,359	+		IAI47_21225	0.82	-1.3
503,359	+		IAI47_21225	0.82	+1.0
503,360	-		IAI47_21225	0.82	-0.7
503,360	-		IAI47_21225	0.82	+2.1
503,401	+		IAI47_21225	0.85	+0.2
503,401	+		IAI47_21225	0.85	+0.8
503,401	+		IAI47_21225	0.85	+0.6
503,401	+		IAI47_21225	0.85	+1.5
503,401	+		IAI47_21225	0.85	-0.8
503,401	+		IAI47_21225	0.85	-1.7
503,401	+		IAI47_21225	0.85	+1.4
503,402	-		IAI47_21225	0.85	+0.2
503,402	-		IAI47_21225	0.85	+0.3
503,419	+		IAI47_21225	0.86	+1.8
503,420	-		IAI47_21225	0.86	-0.4
503,424	+		IAI47_21225	0.86	+0.0
503,460	+		IAI47_21225	0.88	-0.5
503,460	+		IAI47_21225	0.88	-0.3
503,460	+		IAI47_21225	0.88	-1.0
503,460	+		IAI47_21225	0.88	-0.1
503,461	-		IAI47_21225	0.88	-1.8
503,461	-		IAI47_21225	0.88	+0.3
503,461	-		IAI47_21225	0.88	-0.2
503,492	-				+1.2
503,503	+				-0.4
503,503	+				+2.5
503,504	-				-1.8
503,504	-				-1.3
503,504	-				-2.0
503,504	-				-1.8
503,540	-				+1.6
503,562	+				-0.8
503,563	-				-0.7
503,575	-				+0.7
503,575	-				+0.8
503,599	+				-0.2
503,599	+				+2.0
503,599	+				+0.0
503,599	+				+0.5
503,600	-				-0.4
503,600	-				+0.4
503,617	-				+1.9
503,617	-				-0.4
503,617	-				-1.3
503,618	+				-0.4
503,618	+				+0.2
503,618	+				+0.2
503,619	-				+1.6
503,619	-				+0.0
503,619	-				-0.7
503,619	-				+0.9
503,619	-				-0.4
503,619	-				-0.2
503,619	-				+0.2
503,619	-				+1.6
503,637	+				+0.9
503,638	-				+1.3
503,638	-				+1.0
503,663	+				+0.3
503,664	-				-2.4
503,684	-				+0.7
503,700	-				+0.2
503,730	-				-0.0
503,749	+				+0.8
503,752	+				-1.1
503,752	+				+1.2
503,752	+				+0.5
503,753	-				-0.8
503,773	+				-1.7
503,774	-				-0.6
503,774	-				-0.1
503,774	-				-0.4
503,796	+				-2.2
503,796	+				-0.7
503,796	+				-1.1
503,837	+				-0.8
503,838	-				-0.2
503,848	+				-0.2
503,849	-				+0.6
503,849	-				-0.5
503,884	+				-1.0
503,885	-				-0.4
503,885	-				+1.2
503,963	+				+0.7
503,963	+				+0.4
503,963	+				+1.1
503,963	+				+0.1
503,963	+				-1.0
503,964	-				+1.0
503,964	-				-0.5
503,964	-				-1.9
503,964	-				+0.2
503,964	-				-1.0
503,983	+				-0.8
504,094	+				-0.8
504,154	-				+2.2
504,154	-				-0.5
504,169	+				-0.8
504,170	-				+0.4
504,170	-				-0.1
504,181	+				+1.0
504,222	+				-0.2
504,222	+				-0.4
504,261	-				+1.5
504,261	-				-0.7
504,309	-		IAI47_21230	0.15	-2.7
504,349	+		IAI47_21230	0.22	-0.8
504,349	+		IAI47_21230	0.22	-0.8
504,349	+		IAI47_21230	0.22	+1.7
504,349	+		IAI47_21230	0.22	+0.9
504,349	+		IAI47_21230	0.22	+0.5
504,349	+		IAI47_21230	0.22	-0.0
504,350	-		IAI47_21230	0.23	-0.0
504,350	-		IAI47_21230	0.23	-1.8
504,350	-		IAI47_21230	0.23	-1.8
504,350	-		IAI47_21230	0.23	-1.3
504,350	-		IAI47_21230	0.23	-0.6
504,360	-		IAI47_21230	0.24	+1.1
504,360	-		IAI47_21230	0.24	+0.9
504,378	+		IAI47_21230	0.28	-0.0
504,378	+		IAI47_21230	0.28	-0.6
504,378	+		IAI47_21230	0.28	-2.8
504,378	+		IAI47_21230	0.28	-1.2
504,378	+		IAI47_21230	0.28	+1.5
504,379	-		IAI47_21230	0.28	+0.3
504,379	-		IAI47_21230	0.28	+0.6
504,433	+		IAI47_21230	0.37	-0.2
504,433	+		IAI47_21230	0.37	-0.5
504,434	-		IAI47_21230	0.37	+1.5
504,434	-		IAI47_21230	0.37	+0.1
504,434	-		IAI47_21230	0.37	-1.2
504,439	+		IAI47_21230	0.38	-1.3
504,439	+		IAI47_21230	0.38	-0.8
504,440	-		IAI47_21230	0.38	+0.6
504,440	-		IAI47_21230	0.38	+1.0
504,440	-		IAI47_21230	0.38	-0.5
504,440	-		IAI47_21230	0.38	-0.7
504,454	+		IAI47_21230	0.41	-1.4
504,454	+		IAI47_21230	0.41	+0.3
504,454	+		IAI47_21230	0.41	+0.3
504,455	-		IAI47_21230	0.41	-0.9
504,455	-		IAI47_21230	0.41	-0.7
504,458	+		IAI47_21230	0.42	+0.2
504,458	+		IAI47_21230	0.42	-2.6
504,458	+		IAI47_21230	0.42	-0.2
504,459	-		IAI47_21230	0.42	-0.4
504,459	-		IAI47_21230	0.42	+0.8
504,478	+		IAI47_21230	0.45	+1.2
504,544	+		IAI47_21230	0.57	+0.4
504,602	-		IAI47_21230	0.67	-1.8