Strain Fitness in Pantoea sp. MT58 around IAI47_18650

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,976,438	+		IAI47_18645	0.22	-1.0
3,976,438	+		IAI47_18645	0.22	-0.9
3,976,438	+		IAI47_18645	0.22	+0.2
3,976,439	-		IAI47_18645	0.22	-1.8
3,976,439	-		IAI47_18645	0.22	+2.5
3,976,439	-		IAI47_18645	0.22	-1.4
3,976,439	-		IAI47_18645	0.22	+1.2
3,976,509	+		IAI47_18645	0.29	-1.1
3,976,529	+		IAI47_18645	0.31	+0.2
3,976,529	+		IAI47_18645	0.31	+0.9
3,976,529	+		IAI47_18645	0.31	-0.9
3,976,529	+		IAI47_18645	0.31	-1.6
3,976,530	-		IAI47_18645	0.31	-2.8
3,976,530	-		IAI47_18645	0.31	+0.1
3,976,530	-		IAI47_18645	0.31	-1.0
3,976,530	-		IAI47_18645	0.31	-1.0
3,976,569	+		IAI47_18645	0.35	+0.6
3,976,569	+		IAI47_18645	0.35	+0.5
3,976,569	+		IAI47_18645	0.35	-0.4
3,976,569	+		IAI47_18645	0.35	+0.1
3,976,569	+		IAI47_18645	0.35	-0.5
3,976,569	+		IAI47_18645	0.35	+1.9
3,976,570	-		IAI47_18645	0.35	+1.9
3,976,570	-		IAI47_18645	0.35	-1.5
3,976,570	-		IAI47_18645	0.35	+0.7
3,976,570	-		IAI47_18645	0.35	-0.4
3,976,576	+		IAI47_18645	0.35	+0.4
3,976,576	+		IAI47_18645	0.35	-0.1
3,976,576	+		IAI47_18645	0.35	+0.5
3,976,576	+		IAI47_18645	0.35	-2.0
3,976,576	+		IAI47_18645	0.35	+1.6
3,976,577	-		IAI47_18645	0.35	-0.8
3,976,577	-		IAI47_18645	0.35	-1.5
3,976,577	-		IAI47_18645	0.35	+0.6
3,976,683	+		IAI47_18645	0.46	+0.4
3,976,683	+		IAI47_18645	0.46	+1.2
3,976,683	+		IAI47_18645	0.46	+0.8
3,976,683	+		IAI47_18645	0.46	-1.0
3,976,684	-		IAI47_18645	0.46	-1.9
3,976,684	-		IAI47_18645	0.46	+1.4
3,976,684	-		IAI47_18645	0.46	+0.5
3,976,684	-		IAI47_18645	0.46	-0.7
3,976,684	-		IAI47_18645	0.46	-1.2
3,976,684	-		IAI47_18645	0.46	+0.0
3,976,684	-		IAI47_18645	0.46	+0.0
3,976,912	+		IAI47_18645	0.68	-1.6
3,976,912	+		IAI47_18645	0.68	+3.1
3,976,912	+		IAI47_18645	0.68	+1.5
3,976,912	+		IAI47_18645	0.68	+0.1
3,976,912	+		IAI47_18645	0.68	+1.5
3,976,912	+		IAI47_18645	0.68	-2.1
3,976,912	+		IAI47_18645	0.68	-0.0
3,976,912	+		IAI47_18645	0.68	-0.1
3,976,913	-		IAI47_18645	0.68	+1.5
3,976,913	-		IAI47_18645	0.68	-0.2
3,976,913	-		IAI47_18645	0.68	-2.7
3,976,913	-		IAI47_18645	0.68	-1.0
3,976,913	-		IAI47_18645	0.68	-1.1
3,976,913	-		IAI47_18645	0.68	+0.1
3,976,913	-		IAI47_18645	0.68	-0.6
3,976,913	-		IAI47_18645	0.68	-0.6
3,976,913	-		IAI47_18645	0.68	+0.1
3,976,926	+		IAI47_18645	0.70	+2.0
3,976,989	+		IAI47_18645	0.76	-0.1
3,976,990	-		IAI47_18645	0.76	-2.1
3,976,990	-		IAI47_18645	0.76	+1.0
3,977,014	+		IAI47_18645	0.78	-1.6
3,977,014	+		IAI47_18645	0.78	-1.1
3,977,014	+		IAI47_18645	0.78	+1.0
3,977,014	+		IAI47_18645	0.78	+1.6
3,977,014	+		IAI47_18645	0.78	+0.9
3,977,014	+		IAI47_18645	0.78	+0.6
3,977,014	+		IAI47_18645	0.78	-1.6
3,977,014	+		IAI47_18645	0.78	+1.0
3,977,014	+		IAI47_18645	0.78	+0.6
3,977,014	+		IAI47_18645	0.78	+0.7
3,977,015	-		IAI47_18645	0.78	-2.8
3,977,015	-		IAI47_18645	0.78	-1.8
3,977,015	-		IAI47_18645	0.78	-0.2
3,977,015	-		IAI47_18645	0.78	+2.0
3,977,015	-		IAI47_18645	0.78	+2.6
3,977,015	-		IAI47_18645	0.78	-0.5
3,977,015	-		IAI47_18645	0.78	-0.0
3,977,015	-		IAI47_18645	0.78	-2.1
3,977,017	+		IAI47_18645	0.79	-0.9
3,977,017	+		IAI47_18645	0.79	-0.7
3,977,017	+		IAI47_18645	0.79	-1.3
3,977,017	+		IAI47_18645	0.79	-1.0
3,977,017	+		IAI47_18645	0.79	+0.4
3,977,018	-		IAI47_18645	0.79	-0.6
3,977,018	-		IAI47_18645	0.79	-0.2
3,977,018	-		IAI47_18645	0.79	-0.3
3,977,026	-		IAI47_18645	0.79	-0.3
3,977,030	+		IAI47_18645	0.80	-0.4
3,977,031	-		IAI47_18645	0.80	-0.5
3,977,031	-		IAI47_18645	0.80	+0.6
3,977,039	+		IAI47_18645	0.81	+1.1
3,977,039	+		IAI47_18645	0.81	+1.0
3,977,039	+		IAI47_18645	0.81	-2.9
3,977,040	-		IAI47_18645	0.81	+1.2
3,977,040	-		IAI47_18645	0.81	-0.7
3,977,080	+		IAI47_18645	0.85	+0.9
3,977,080	+		IAI47_18645	0.85	-0.9
3,977,080	+		IAI47_18645	0.85	+1.0
3,977,081	-		IAI47_18645	0.85	+0.7
3,977,081	-		IAI47_18645	0.85	+1.2
3,977,106	+		IAI47_18645	0.87	-2.0
3,977,107	-		IAI47_18645	0.87	-0.5
3,977,173	+				+0.6
3,977,173	+				-0.5
3,977,173	+				+1.1
3,977,174	-				-0.0
3,977,174	-				-0.4
3,977,174	-				-0.2
3,977,174	-				+0.1
3,977,174	-				-2.6
3,977,174	-				+0.5
3,977,174	-				-0.7
3,977,174	-				+0.3
3,977,178	+				+0.5
3,977,178	+				-0.3
3,977,178	+				-2.8
3,977,178	+				+0.3
3,977,178	+				-0.4
3,977,178	+				-1.0
3,977,179	-				+0.6
3,977,179	-				-0.6
3,977,179	-				-2.0
3,977,179	-				-0.4
3,977,179	-				+1.6
3,977,179	-				-0.5
3,977,179	-				-0.2
3,977,179	-				-1.0
3,977,179	-				+0.4
3,977,200	-				-0.3
3,977,221	+				+0.8
3,977,222	-				+0.4
3,977,222	-				-0.1
3,977,222	-				-0.1
3,977,222	-				-1.2
3,977,222	-				+0.4
3,977,235	+				+0.2
3,977,235	+				-0.6
3,977,235	+				-1.4
3,977,235	+				-1.9
3,977,235	+				+1.0
3,977,236	-				-0.1
3,977,236	-				+1.1
3,977,236	-				-0.7
3,977,282	+				+0.1
3,977,282	+				-1.4
3,977,282	+				-0.5
3,977,282	+				+1.2
3,977,282	+				-1.3
3,977,282	+				+0.8
3,977,289	+				-0.4
3,977,289	+				+0.7
3,977,289	+				-1.0
3,977,289	+				-0.2
3,977,289	+				+0.0
3,977,289	+				-0.5
3,977,289	+				-1.6
3,977,289	+				+0.3
3,977,289	+				+1.3
3,977,289	+				+0.4
3,977,289	+				+0.1
3,977,289	+				-0.0
3,977,290	-				+0.3
3,977,290	-				-0.2
3,977,290	-				-0.5
3,977,290	-				-0.6
3,977,290	-				-0.4
3,977,290	-				+1.4
3,977,290	-				+1.1
3,977,290	-				+1.3
3,977,290	-				-1.3
3,977,352	+				-0.7
3,977,366	-				-0.3
3,977,366	-				-1.6
3,977,408	+				-0.6
3,977,408	+				+0.2
3,977,408	+				-0.9
3,977,409	-				+0.9
3,977,409	-				+0.2
3,977,409	-				+2.4
3,977,409	-				-0.3
3,977,409	-				-0.8
3,977,415	+				+0.3
3,977,415	+				+0.2
3,977,416	-				+1.1
3,977,422	+				+0.4
3,977,423	-				+1.0
3,977,435	+				+1.3
3,977,435	+				+1.3
3,977,436	-				+0.3
3,977,436	-				-0.4
3,977,436	-				-1.6
3,977,436	-				-0.3
3,977,436	-				-0.8
3,977,436	-				-1.7
3,977,436	-				-1.3
3,977,462	+				-1.5
3,977,463	-				-2.5
3,977,463	-				-0.1
3,977,492	+				-1.0
3,977,492	+				-1.1
3,977,492	+				+0.9
3,977,492	+				-0.7
3,977,492	+				-0.7
3,977,493	-				-3.7
3,977,493	-				+1.4
3,977,493	-				-1.4
3,977,493	-				+0.5
3,977,493	-				+0.3
3,977,493	-				-1.5
3,977,493	-				-0.8
3,977,493	-				+0.4
3,977,494	+				+0.2
3,977,494	+				-0.1
3,977,494	+				+0.8
3,977,494	+				-0.2
3,977,494	+				+0.6
3,977,494	+				+1.0
3,977,558	+				-1.4
3,977,558	+				+0.1
3,977,558	+				-0.5
3,977,558	+				-0.4
3,977,559	-				-2.1
3,977,559	-				+1.2
3,977,559	-				-1.3
3,977,559	-				+0.5
3,977,559	-				-0.0
3,977,559	-				-0.1
3,977,561	+				-0.3
3,977,562	-				+1.1
3,977,625	+		IAI47_18650	0.14	+1.3
3,977,625	+		IAI47_18650	0.14	-0.2
3,977,625	+		IAI47_18650	0.14	+0.0
3,977,625	+		IAI47_18650	0.14	+1.2
3,977,626	-		IAI47_18650	0.14	+2.0
3,977,626	-		IAI47_18650	0.14	-0.2
3,977,626	-		IAI47_18650	0.14	+0.0
3,977,626	-		IAI47_18650	0.14	+0.2
3,977,626	-		IAI47_18650	0.14	+0.1
3,977,626	-		IAI47_18650	0.14	-0.4
3,977,642	+		IAI47_18650	0.15	+0.0
3,977,642	+		IAI47_18650	0.15	+2.7
3,977,643	-		IAI47_18650	0.15	+1.2
3,977,643	-		IAI47_18650	0.15	-2.3
3,977,646	+		IAI47_18650	0.15	-0.3
3,977,646	+		IAI47_18650	0.15	-1.7
3,977,646	+		IAI47_18650	0.15	-2.1
3,977,646	+		IAI47_18650	0.15	-0.2
3,977,647	-		IAI47_18650	0.15	+0.1
3,977,647	-		IAI47_18650	0.15	-1.4
3,977,647	-		IAI47_18650	0.15	-1.2
3,977,647	-		IAI47_18650	0.15	+0.4
3,977,647	-		IAI47_18650	0.15	-0.5
3,977,659	-		IAI47_18650	0.16	+2.6
3,977,694	+		IAI47_18650	0.18	+0.1
3,977,783	+		IAI47_18650	0.23	-1.2
3,977,783	+		IAI47_18650	0.23	-0.9
3,977,783	+		IAI47_18650	0.23	-1.1
3,977,783	+		IAI47_18650	0.23	-0.4
3,977,783	+		IAI47_18650	0.23	+0.2
3,977,783	+		IAI47_18650	0.23	+0.2
3,977,783	+		IAI47_18650	0.23	-0.7
3,977,784	-		IAI47_18650	0.23	-0.7
3,977,784	-		IAI47_18650	0.23	+0.9
3,977,784	-		IAI47_18650	0.23	+0.1
3,977,784	-		IAI47_18650	0.23	-0.1
3,977,864	+		IAI47_18650	0.28	+0.3
3,977,864	+		IAI47_18650	0.28	+1.4
3,977,864	+		IAI47_18650	0.28	-1.3
3,977,864	+		IAI47_18650	0.28	+0.0
3,977,864	+		IAI47_18650	0.28	+0.2
3,977,864	+		IAI47_18650	0.28	+0.0
3,977,865	-		IAI47_18650	0.28	+0.7
3,977,865	-		IAI47_18650	0.28	+1.9
3,977,865	-		IAI47_18650	0.28	+1.9
3,977,865	-		IAI47_18650	0.28	+0.8
3,977,865	-		IAI47_18650	0.28	-0.0
3,977,957	+		IAI47_18650	0.34	-0.1
3,977,957	+		IAI47_18650	0.34	+0.0
3,977,957	+		IAI47_18650	0.34	+0.1
3,977,957	+		IAI47_18650	0.34	+0.8
3,977,957	+		IAI47_18650	0.34	+0.7
3,977,957	+		IAI47_18650	0.34	-1.0
3,977,958	-		IAI47_18650	0.34	+1.4
3,977,958	-		IAI47_18650	0.34	-0.2
3,977,958	-		IAI47_18650	0.34	-0.2
3,977,958	-		IAI47_18650	0.34	-0.9
3,977,958	-		IAI47_18650	0.34	-0.6
3,977,958	-		IAI47_18650	0.34	-0.9
3,977,958	-		IAI47_18650	0.34	-0.0
3,977,958	-		IAI47_18650	0.34	+0.7
3,977,958	-		IAI47_18650	0.34	+0.2
3,977,963	+		IAI47_18650	0.35	-0.1
3,977,963	+		IAI47_18650	0.35	-0.6
3,977,963	+		IAI47_18650	0.35	-0.7
3,977,963	+		IAI47_18650	0.35	+0.6
3,977,963	+		IAI47_18650	0.35	+2.8
3,977,963	+		IAI47_18650	0.35	-0.6
3,977,963	+		IAI47_18650	0.35	+0.8
3,977,963	+		IAI47_18650	0.35	+1.0
3,977,964	-		IAI47_18650	0.35	+0.3
3,977,964	-		IAI47_18650	0.35	+0.7
3,977,964	-		IAI47_18650	0.35	-1.7
3,977,964	-		IAI47_18650	0.35	+1.2
3,977,964	-		IAI47_18650	0.35	-1.4
3,977,982	+		IAI47_18650	0.36	-0.4
3,977,984	+		IAI47_18650	0.36	+0.8
3,978,015	+		IAI47_18650	0.38	-0.0
3,978,016	-		IAI47_18650	0.38	-0.0
3,978,091	+		IAI47_18650	0.42	-1.6
3,978,091	+		IAI47_18650	0.42	+2.4
3,978,091	+		IAI47_18650	0.42	+0.3
3,978,091	+		IAI47_18650	0.42	-0.1
3,978,091	+		IAI47_18650	0.42	-0.2
3,978,092	-		IAI47_18650	0.43	+0.7
3,978,092	-		IAI47_18650	0.43	-1.7
3,978,092	-		IAI47_18650	0.43	+2.1
3,978,102	+		IAI47_18650	0.43	+2.5
3,978,128	+		IAI47_18650	0.45	-0.5
3,978,128	+		IAI47_18650	0.45	-0.7
3,978,128	+		IAI47_18650	0.45	-0.1
3,978,128	+		IAI47_18650	0.45	+0.5
3,978,128	+		IAI47_18650	0.45	-1.0
3,978,128	+		IAI47_18650	0.45	-1.3
3,978,129	-		IAI47_18650	0.45	-2.4
3,978,129	-		IAI47_18650	0.45	+2.2
3,978,129	-		IAI47_18650	0.45	+0.5
3,978,129	-		IAI47_18650	0.45	+1.1
3,978,129	-		IAI47_18650	0.45	+0.7
3,978,137	+		IAI47_18650	0.45	+0.1
3,978,137	+		IAI47_18650	0.45	+2.6
3,978,164	+		IAI47_18650	0.47	-1.7
3,978,164	+		IAI47_18650	0.47	-0.5
3,978,164	+		IAI47_18650	0.47	+1.5
3,978,165	-		IAI47_18650	0.47	+2.1
3,978,165	-		IAI47_18650	0.47	+3.0
3,978,165	-		IAI47_18650	0.47	+1.5
3,978,165	-		IAI47_18650	0.47	+0.8
3,978,192	+		IAI47_18650	0.49	-1.2
3,978,192	+		IAI47_18650	0.49	-2.1
3,978,192	+		IAI47_18650	0.49	+0.3
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