Strain Fitness in Pantoea sp. MT58 around IAI47_16915

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,588,517	+		IAI47_16910	0.72	-2.2
3,588,687	+		IAI47_16910	0.79	-1.3
3,588,687	+		IAI47_16910	0.79	+0.7
3,588,687	+		IAI47_16910	0.79	-0.6
3,588,687	+		IAI47_16910	0.79	+2.4
3,588,688	-		IAI47_16910	0.79	-1.3
3,588,688	-		IAI47_16910	0.79	-0.3
3,588,688	-		IAI47_16910	0.79	-0.4
3,588,689	+		IAI47_16910	0.79	+0.4
3,588,689	+		IAI47_16910	0.79	-0.7
3,588,689	+		IAI47_16910	0.79	+1.1
3,588,689	+		IAI47_16910	0.79	-0.2
3,588,689	+		IAI47_16910	0.79	-0.4
3,588,689	+		IAI47_16910	0.79	+1.5
3,588,689	+		IAI47_16910	0.79	-1.1
3,588,689	+		IAI47_16910	0.79	+0.1
3,588,689	+		IAI47_16910	0.79	+0.2
3,588,689	+		IAI47_16910	0.79	+3.0
3,588,689	+		IAI47_16910	0.79	+1.5
3,588,689	+		IAI47_16910	0.79	-0.4
3,588,689	+		IAI47_16910	0.79	-0.2
3,588,689	+		IAI47_16910	0.79	-1.1
3,588,689	+		IAI47_16910	0.79	+0.3
3,588,689	+		IAI47_16910	0.79	+0.5
3,588,689	+		IAI47_16910	0.79	+1.5
3,588,689	+		IAI47_16910	0.79	+2.3
3,588,690	-		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	-0.1
3,588,690	-		IAI47_16910	0.79	-0.0
3,588,690	-		IAI47_16910	0.79	-2.8
3,588,690	-		IAI47_16910	0.79	+0.0
3,588,690	-		IAI47_16910	0.79	-0.1
3,588,690	-		IAI47_16910	0.79	-0.9
3,588,690	-		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	+1.9
3,588,690	-		IAI47_16910	0.79	+0.4
3,588,690	-		IAI47_16910	0.79	-0.3
3,588,690	-		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	-0.7
3,588,690	-		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	+0.3
3,588,690	-		IAI47_16910	0.79	-0.8
3,588,690	-		IAI47_16910	0.79	+0.5
3,588,690	-		IAI47_16910	0.79	-1.2
3,588,690	-		IAI47_16910	0.79	+0.3
3,588,690	-		IAI47_16910	0.79	-1.8
3,588,700	+		IAI47_16910	0.80	-0.6
3,588,700	+		IAI47_16910	0.80	+0.6
3,588,704	+		IAI47_16910	0.80	-0.3
3,588,704	+		IAI47_16910	0.80	-0.3
3,588,704	+		IAI47_16910	0.80	+0.6
3,588,704	+		IAI47_16910	0.80	-0.0
3,588,704	+		IAI47_16910	0.80	+0.6
3,588,704	+		IAI47_16910	0.80	+1.7
3,588,705	-		IAI47_16910	0.80	+0.5
3,588,737	+		IAI47_16910	0.81	+0.3
3,588,737	+		IAI47_16910	0.81	+1.2
3,588,737	+		IAI47_16910	0.81	+0.7
3,588,737	+		IAI47_16910	0.81	-0.6
3,588,737	+		IAI47_16910	0.81	-2.4
3,588,737	+		IAI47_16910	0.81	-1.2
3,588,737	+		IAI47_16910	0.81	+0.4
3,588,738	-		IAI47_16910	0.81	+0.6
3,588,738	-		IAI47_16910	0.81	-0.1
3,588,738	-		IAI47_16910	0.81	+1.1
3,588,738	-		IAI47_16910	0.81	+2.2
3,588,777	-		IAI47_16910	0.83	-1.1
3,588,808	-		IAI47_16910	0.84	+1.7
3,588,834	-		IAI47_16910	0.85	-0.2
3,589,025	+				+0.6
3,589,202	+				-1.8
3,589,202	+				+0.5
3,589,203	-				-0.3
3,589,203	-				+2.5
3,589,203	-				-0.5
3,589,203	-				-1.7
3,589,203	-				-2.2
3,589,203	-				-0.9
3,589,203	-				-1.0
3,589,203	-				+0.5
3,589,326	+				-0.1
3,589,326	+				-1.2
3,589,360	+				+0.9
3,589,361	-				+0.4
3,589,361	-				-0.0
3,589,361	-				+1.7
3,589,365	+				+0.5
3,589,365	+				+1.3
3,589,365	+				+0.3
3,589,365	+				-0.1
3,589,365	+				+1.7
3,589,365	+				-0.4
3,589,365	+				-0.6
3,589,365	+				+1.4
3,589,366	-				-0.8
3,589,366	-				-0.1
3,589,366	-				-0.7
3,589,366	-				-1.6
3,589,366	-				-1.1
3,589,370	+				-0.4
3,589,416	+				-0.1
3,589,416	+				-1.2
3,589,417	-				-1.6
3,589,423	+				+0.5
3,589,424	-				+3.2
3,589,460	+		IAI47_16915	0.10	+0.1
3,589,462	-		IAI47_16915	0.11	-1.0
3,589,487	+		IAI47_16915	0.13	-0.1
3,589,589	-		IAI47_16915	0.23	+1.2
3,589,774	+		IAI47_16915	0.42	-0.6
3,589,797	+		IAI47_16915	0.44	-1.3
3,589,798	-		IAI47_16915	0.44	-1.1
3,589,819	+		IAI47_16915	0.46	+0.5
3,589,819	+		IAI47_16915	0.46	-2.8
3,589,819	+		IAI47_16915	0.46	+0.8
3,589,819	+		IAI47_16915	0.46	-0.6
3,589,819	+		IAI47_16915	0.46	+0.1
3,589,819	+		IAI47_16915	0.46	-2.1
3,589,820	-		IAI47_16915	0.46	+0.3
3,589,888	+		IAI47_16915	0.53	+1.5
3,589,888	+		IAI47_16915	0.53	+1.4
3,589,889	-		IAI47_16915	0.53	-1.2
3,589,889	-		IAI47_16915	0.53	+0.4
3,589,897	+		IAI47_16915	0.54	-0.8
3,589,897	+		IAI47_16915	0.54	+0.8
3,589,897	+		IAI47_16915	0.54	+0.3
3,589,898	-		IAI47_16915	0.54	+0.9
3,589,898	-		IAI47_16915	0.54	-0.2
3,589,898	-		IAI47_16915	0.54	+0.0
3,589,946	+		IAI47_16915	0.59	-0.6
3,589,947	-		IAI47_16915	0.59	-0.8
3,589,949	+		IAI47_16915	0.59	-1.4
3,589,949	+		IAI47_16915	0.59	+1.2
3,589,949	+		IAI47_16915	0.59	+0.1
3,589,949	+		IAI47_16915	0.59	+0.1
3,589,949	+		IAI47_16915	0.59	+1.7
3,589,949	+		IAI47_16915	0.59	-1.5
3,589,950	-		IAI47_16915	0.59	-0.9
3,589,950	-		IAI47_16915	0.59	-0.6
3,589,950	-		IAI47_16915	0.59	-1.2
3,589,950	-		IAI47_16915	0.59	+0.4
3,589,950	-		IAI47_16915	0.59	-0.8
3,589,950	-		IAI47_16915	0.59	+0.8
3,589,950	-		IAI47_16915	0.59	-0.1
3,589,950	-		IAI47_16915	0.59	+0.2
3,589,950	-		IAI47_16915	0.59	+0.8
3,590,192	+		IAI47_16915	0.84	+0.8
3,590,192	+		IAI47_16915	0.84	+0.4
3,590,193	-		IAI47_16915	0.84	-0.4
3,590,193	-		IAI47_16915	0.84	+0.8
3,590,193	-		IAI47_16915	0.84	-0.1
3,590,193	-		IAI47_16915	0.84	+0.5
3,590,393	+				+1.9
3,590,393	+				-0.5
3,590,528	+				-0.9
3,590,528	+				-0.5
3,590,528	+				+0.0
3,590,528	+				+0.9
3,590,528	+				-0.1
3,590,528	+				-0.5
3,590,528	+				+1.5
3,590,528	+				+0.8
3,590,529	-				-2.2
3,590,529	-				-0.3
3,590,529	-				+1.6
3,590,629	+				+4.1
3,590,629	+				+0.0
3,590,695	-		IAI47_16920	0.13	-0.9
3,590,697	+		IAI47_16920	0.13	+1.9
3,590,697	+		IAI47_16920	0.13	+1.2
3,590,698	-		IAI47_16920	0.13	-0.0
3,590,698	-		IAI47_16920	0.13	+0.3
3,590,710	+		IAI47_16920	0.13	+0.2
3,590,782	+		IAI47_16920	0.16	-0.3
3,590,795	+		IAI47_16920	0.17	-0.4
3,590,795	+		IAI47_16920	0.17	-0.2
3,590,796	-		IAI47_16920	0.17	-1.1
3,590,801	+		IAI47_16920	0.17	+1.2
3,590,801	+		IAI47_16920	0.17	-1.0
3,590,801	+		IAI47_16920	0.17	-0.3
3,590,801	+		IAI47_16920	0.17	-1.9
3,590,802	-		IAI47_16920	0.17	-0.1
3,590,837	+		IAI47_16920	0.19	-0.1
3,590,837	+		IAI47_16920	0.19	-0.1
3,590,837	+		IAI47_16920	0.19	-0.9
3,590,837	+		IAI47_16920	0.19	-0.1
3,590,838	-		IAI47_16920	0.19	+1.5
3,590,838	-		IAI47_16920	0.19	-0.8
3,590,838	-		IAI47_16920	0.19	-0.5
3,590,838	-		IAI47_16920	0.19	+2.1
3,590,838	-		IAI47_16920	0.19	+0.3
3,590,838	-		IAI47_16920	0.19	+1.2
3,590,838	-		IAI47_16920	0.19	+0.4
3,590,838	-		IAI47_16920	0.19	-1.4
3,590,840	+		IAI47_16920	0.19	-0.4
3,590,840	+		IAI47_16920	0.19	-0.2
3,590,840	+		IAI47_16920	0.19	+1.6
3,590,840	+		IAI47_16920	0.19	-1.4
3,590,841	-		IAI47_16920	0.19	+1.0
3,590,869	+		IAI47_16920	0.20	-0.1
3,590,870	-		IAI47_16920	0.20	-1.1
3,590,886	+		IAI47_16920	0.21	-1.4
3,590,887	-		IAI47_16920	0.21	+2.8
3,590,953	+		IAI47_16920	0.24	-0.3
3,590,953	+		IAI47_16920	0.24	-0.1
3,590,954	-		IAI47_16920	0.24	+0.6
3,590,954	-		IAI47_16920	0.24	-0.2
3,590,990	+		IAI47_16920	0.25	-0.1
3,590,990	+		IAI47_16920	0.25	+3.1
3,590,990	+		IAI47_16920	0.25	+0.9
3,590,990	+		IAI47_16920	0.25	-1.9
3,591,070	-		IAI47_16920	0.29	-0.4
3,591,075	+		IAI47_16920	0.29	-1.1
3,591,075	+		IAI47_16920	0.29	+0.1
3,591,075	+		IAI47_16920	0.29	-0.0
3,591,075	+		IAI47_16920	0.29	+0.1
3,591,075	+		IAI47_16920	0.29	+0.1
3,591,075	+		IAI47_16920	0.29	+0.3
3,591,075	+		IAI47_16920	0.29	+4.8
3,591,076	-		IAI47_16920	0.29	-0.2
3,591,076	-		IAI47_16920	0.29	-1.4
3,591,076	-		IAI47_16920	0.29	-1.7
3,591,076	-		IAI47_16920	0.29	-0.7
3,591,076	-		IAI47_16920	0.29	-1.1
3,591,076	-		IAI47_16920	0.29	-0.6
3,591,209	+		IAI47_16920	0.34	-1.2
3,591,223	+		IAI47_16920	0.35	+0.2
3,591,233	+		IAI47_16920	0.35	+0.9
3,591,233	+		IAI47_16920	0.35	-0.5
3,591,233	+		IAI47_16920	0.35	+1.6
3,591,234	-		IAI47_16920	0.35	-0.6
3,591,234	-		IAI47_16920	0.35	-0.9
3,591,234	-		IAI47_16920	0.35	+0.5
3,591,234	-		IAI47_16920	0.35	+0.7
3,591,234	-		IAI47_16920	0.35	-2.2