Strain Fitness in Pantoea sp. MT58 around IAI47_16590

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,517,362	+		IAI47_16585	0.62	+0.3
3,517,363	-		IAI47_16585	0.62	+1.4
3,517,363	-		IAI47_16585	0.62	+0.4
3,517,363	-		IAI47_16585	0.62	+2.1
3,517,379	+		IAI47_16585	0.63	-0.4
3,517,380	-		IAI47_16585	0.63	+2.3
3,517,402	+		IAI47_16585	0.64	+0.2
3,517,402	+		IAI47_16585	0.64	-2.5
3,517,402	+		IAI47_16585	0.64	-0.9
3,517,403	-		IAI47_16585	0.64	-0.3
3,517,424	+		IAI47_16585	0.65	-0.3
3,517,431	+		IAI47_16585	0.65	+2.5
3,517,431	+		IAI47_16585	0.65	+1.9
3,517,431	+		IAI47_16585	0.65	-1.5
3,517,431	+		IAI47_16585	0.65	-0.3
3,517,437	+		IAI47_16585	0.65	+0.3
3,517,451	+		IAI47_16585	0.66	-1.5
3,517,452	-		IAI47_16585	0.66	+1.7
3,517,452	-		IAI47_16585	0.66	+1.6
3,517,452	-		IAI47_16585	0.66	+0.7
3,517,458	+		IAI47_16585	0.66	+2.0
3,517,458	+		IAI47_16585	0.66	+1.3
3,517,461	+		IAI47_16585	0.67	+1.3
3,517,461	+		IAI47_16585	0.67	-0.5
3,517,462	-		IAI47_16585	0.67	-0.4
3,517,462	-		IAI47_16585	0.67	+0.9
3,517,485	+		IAI47_16585	0.68	+0.3
3,517,485	+		IAI47_16585	0.68	+1.3
3,517,486	-		IAI47_16585	0.68	-0.1
3,517,518	+		IAI47_16585	0.69	+0.2
3,517,518	+		IAI47_16585	0.69	+0.3
3,517,518	+		IAI47_16585	0.69	+0.5
3,517,518	+		IAI47_16585	0.69	-2.0
3,517,518	+		IAI47_16585	0.69	+1.7
3,517,518	+		IAI47_16585	0.69	+1.2
3,517,519	-		IAI47_16585	0.69	+0.0
3,517,519	-		IAI47_16585	0.69	+2.0
3,517,519	-		IAI47_16585	0.69	+0.3
3,517,535	-		IAI47_16585	0.70	+0.1
3,517,535	-		IAI47_16585	0.70	-0.1
3,517,535	-		IAI47_16585	0.70	-2.3
3,517,535	-		IAI47_16585	0.70	-1.6
3,517,543	-		IAI47_16585	0.71	+0.6
3,517,543	-		IAI47_16585	0.71	-0.8
3,517,557	+		IAI47_16585	0.71	+0.4
3,517,566	+		IAI47_16585	0.72	+0.8
3,517,566	+		IAI47_16585	0.72	+0.4
3,517,566	+		IAI47_16585	0.72	-0.7
3,517,566	+		IAI47_16585	0.72	-0.1
3,517,567	-		IAI47_16585	0.72	+0.3
3,517,567	-		IAI47_16585	0.72	-0.4
3,517,567	-		IAI47_16585	0.72	+0.5
3,517,568	+		IAI47_16585	0.72	-0.3
3,517,568	+		IAI47_16585	0.72	+0.6
3,517,568	+		IAI47_16585	0.72	+0.2
3,517,568	+		IAI47_16585	0.72	-0.1
3,517,568	+		IAI47_16585	0.72	+1.2
3,517,569	-		IAI47_16585	0.72	+1.5
3,517,569	-		IAI47_16585	0.72	-0.8
3,517,569	-		IAI47_16585	0.72	+1.9
3,517,569	-		IAI47_16585	0.72	+0.6
3,517,587	+		IAI47_16585	0.73	+0.3
3,517,587	+		IAI47_16585	0.73	+0.1
3,517,587	+		IAI47_16585	0.73	-0.7
3,517,587	+		IAI47_16585	0.73	+0.4
3,517,587	+		IAI47_16585	0.73	-0.4
3,517,587	+		IAI47_16585	0.73	-0.7
3,517,587	+		IAI47_16585	0.73	-0.6
3,517,587	+		IAI47_16585	0.73	-0.9
3,517,588	-		IAI47_16585	0.73	+0.8
3,517,588	-		IAI47_16585	0.73	-1.1
3,517,588	-		IAI47_16585	0.73	-0.7
3,517,588	-		IAI47_16585	0.73	+1.9
3,517,588	-		IAI47_16585	0.73	-0.2
3,517,588	-		IAI47_16585	0.73	+0.7
3,517,588	-		IAI47_16585	0.73	+3.4
3,517,588	-		IAI47_16585	0.73	+3.6
3,517,599	+		IAI47_16585	0.73	-1.0
3,517,600	-		IAI47_16585	0.73	+0.2
3,517,614	+		IAI47_16585	0.74	-0.3
3,517,614	+		IAI47_16585	0.74	-0.1
3,517,614	+		IAI47_16585	0.74	+0.2
3,517,614	+		IAI47_16585	0.74	-1.8
3,517,614	+		IAI47_16585	0.74	-0.2
3,517,615	-		IAI47_16585	0.74	+0.7
3,517,615	-		IAI47_16585	0.74	+0.8
3,517,615	-		IAI47_16585	0.74	-0.3
3,517,615	-		IAI47_16585	0.74	-0.3
3,517,618	+		IAI47_16585	0.74	-1.0
3,517,618	+		IAI47_16585	0.74	+0.3
3,517,618	+		IAI47_16585	0.74	-0.5
3,517,618	+		IAI47_16585	0.74	-0.5
3,517,618	+		IAI47_16585	0.74	-0.8
3,517,619	-		IAI47_16585	0.74	-1.2
3,517,619	-		IAI47_16585	0.74	-0.3
3,517,619	-		IAI47_16585	0.74	+0.8
3,517,619	-		IAI47_16585	0.74	+0.6
3,517,619	-		IAI47_16585	0.74	-0.4
3,517,709	+		IAI47_16585	0.79	+0.6
3,517,709	+		IAI47_16585	0.79	-0.8
3,517,709	+		IAI47_16585	0.79	-1.2
3,517,709	+		IAI47_16585	0.79	-0.4
3,517,715	+		IAI47_16585	0.79	+2.0
3,517,715	+		IAI47_16585	0.79	-1.0
3,517,715	+		IAI47_16585	0.79	-1.6
3,517,715	+		IAI47_16585	0.79	-0.5
3,517,716	-		IAI47_16585	0.79	-0.4
3,517,716	-		IAI47_16585	0.79	-0.2
3,517,716	-		IAI47_16585	0.79	+2.6
3,517,737	+		IAI47_16585	0.80	-1.4
3,517,738	-		IAI47_16585	0.80	-0.6
3,517,738	-		IAI47_16585	0.80	+0.3
3,517,766	+		IAI47_16585	0.81	-1.2
3,517,766	+		IAI47_16585	0.81	-1.3
3,517,767	-		IAI47_16585	0.81	+0.7
3,517,767	-		IAI47_16585	0.81	+1.3
3,517,802	+		IAI47_16585	0.83	+0.1
3,517,803	-		IAI47_16585	0.83	-1.6
3,517,803	-		IAI47_16585	0.83	-0.9
3,517,819	+		IAI47_16585	0.84	+2.0
3,517,830	+		IAI47_16585	0.85	+4.1
3,517,836	+		IAI47_16585	0.85	-1.8
3,517,837	-		IAI47_16585	0.85	+0.8
3,517,837	-		IAI47_16585	0.85	-2.3
3,517,839	+		IAI47_16585	0.85	+0.3
3,517,839	+		IAI47_16585	0.85	-0.1
3,517,839	+		IAI47_16585	0.85	-0.8
3,517,848	+		IAI47_16585	0.85	+0.3
3,517,848	+		IAI47_16585	0.85	-0.1
3,517,862	+		IAI47_16585	0.86	-0.6
3,517,862	+		IAI47_16585	0.86	-0.5
3,517,875	+		IAI47_16585	0.87	-1.2
3,517,875	+		IAI47_16585	0.87	+0.7
3,517,876	-		IAI47_16585	0.87	-0.2
3,517,876	-		IAI47_16585	0.87	-1.9
3,517,876	-		IAI47_16585	0.87	+0.9
3,517,947	+				-0.4
3,517,947	+				-0.4
3,517,947	+				+0.1
3,517,947	+				+0.2
3,517,947	+				+0.0
3,517,947	+				+1.4
3,517,947	+				+0.7
3,517,947	+				+0.1
3,517,947	+				+2.0
3,517,948	-				+0.9
3,517,948	-				-0.3
3,517,948	-				+0.5
3,517,977	+				-1.5
3,517,977	+				+0.9
3,517,977	+				-0.3
3,517,978	-				+0.1
3,517,978	-				-0.5
3,517,978	-				+1.6
3,517,978	-				+2.5
3,517,980	+				-0.8
3,517,980	+				-0.4
3,517,980	+				-2.4
3,517,980	+				-0.6
3,517,981	-				-1.7
3,518,007	+				-0.1
3,518,007	+				-0.6
3,518,048	-				+1.0
3,518,061	-				+0.6
3,518,085	-				+0.9
3,518,085	-				+1.0
3,518,085	-				-0.6
3,518,091	+				-1.0
3,518,103	+				+0.7
3,518,125	+				+0.3
3,518,126	-				+0.2
3,518,126	-				-1.1
3,518,153	+				+0.3
3,518,153	+				+0.3
3,518,153	+				+0.5
3,518,153	+				-0.5
3,518,153	+				+0.2
3,518,153	+				-0.4
3,518,154	-				+0.9
3,518,154	-				+0.6
3,518,154	-				+0.8
3,518,154	-				+0.4
3,518,154	-				+0.7
3,518,154	-				-1.4
3,518,154	-				+0.7
3,518,185	+				-1.1
3,518,205	-				+0.1
3,518,222	+				+0.4
3,518,252	-				-0.4
3,518,255	+				+0.4
3,518,256	-				+0.8
3,518,270	-				-1.2
3,518,327	-				+1.4
3,518,332	+				-0.2
3,518,333	-				-0.1
3,518,379	-		IAI47_16590	0.18	-1.0
3,518,379	-		IAI47_16590	0.18	-0.1
3,518,402	+		IAI47_16590	0.27	-0.3
3,518,403	-		IAI47_16590	0.27	+3.0
3,518,409	+		IAI47_16590	0.29	-1.2
3,518,410	-		IAI47_16590	0.30	+1.3
3,518,420	+		IAI47_16590	0.33	-0.4
3,518,434	+		IAI47_16590	0.39	-0.2
3,518,435	-		IAI47_16590	0.39	+0.1
3,518,437	-		IAI47_16590	0.40	+0.9
3,518,461	+		IAI47_16590	0.49	-1.0
3,518,461	+		IAI47_16590	0.49	+0.2
3,518,489	+		IAI47_16590	0.59	+1.6
3,518,489	+		IAI47_16590	0.59	+0.3
3,518,489	+		IAI47_16590	0.59	-0.6
3,518,489	+		IAI47_16590	0.59	-0.1
3,518,489	+		IAI47_16590	0.59	-0.2
3,518,489	+		IAI47_16590	0.59	+1.4
3,518,489	+		IAI47_16590	0.59	-0.7
3,518,490	-		IAI47_16590	0.60	+0.8
3,518,490	-		IAI47_16590	0.60	-1.1
3,518,490	-		IAI47_16590	0.60	-0.1
3,518,490	-		IAI47_16590	0.60	+0.1
3,518,490	-		IAI47_16590	0.60	-0.6
3,518,513	+		IAI47_16590	0.68	-0.8
3,518,513	+		IAI47_16590	0.68	-0.4
3,518,513	+		IAI47_16590	0.68	+1.4
3,518,513	+		IAI47_16590	0.68	-1.9
3,518,513	+		IAI47_16590	0.68	+0.4
3,518,513	+		IAI47_16590	0.68	-0.2
3,518,513	+		IAI47_16590	0.68	+0.5
3,518,514	-		IAI47_16590	0.69	+0.6
3,518,514	-		IAI47_16590	0.69	-0.2
3,518,514	-		IAI47_16590	0.69	-0.2
3,518,514	-		IAI47_16590	0.69	-1.9
3,518,514	-		IAI47_16590	0.69	-1.5
3,518,541	-		IAI47_16590	0.79	-0.2
3,518,549	+				+1.3
3,518,549	+				-1.0
3,518,550	-				-1.9
3,518,553	+				+0.5
3,518,554	-				-0.9
3,518,554	-				-0.2
3,518,562	+				-0.5
3,518,604	+		IAI47_16595	0.50	-0.1
3,518,604	+		IAI47_16595	0.50	+1.7
3,518,604	+		IAI47_16595	0.50	+0.1
3,518,605	-		IAI47_16595	0.51	+0.8
3,518,605	-		IAI47_16595	0.51	+0.4
3,518,605	-		IAI47_16595	0.51	+2.1
3,518,605	-		IAI47_16595	0.51	-1.5
3,518,605	-		IAI47_16595	0.51	-1.2
3,518,606	+		IAI47_16595	0.52	-1.0
3,518,607	-		IAI47_16595	0.53	+2.8
3,518,665	+				+1.1
3,518,666	-				+0.5
3,518,666	-				+0.9
3,518,690	+				+1.1
3,518,690	+				+0.0
3,518,691	-				-0.5
3,518,713	-				+0.2
3,518,714	+				-0.1
3,518,715	-				+0.5
3,518,715	-				-1.3
3,518,726	+				+0.0
3,518,726	+				+0.1
3,518,726	+				+0.4
3,518,726	+				+0.2
3,518,727	-				+1.3
3,518,739	-				-1.8
3,518,739	-				-0.6
3,518,739	-				+2.1
3,518,748	+				-1.1
3,518,748	+				+1.5
3,518,748	+				-0.3
3,518,748	+				+1.4
3,518,749	-				-0.2
3,518,749	-				+1.7
3,518,749	-				-1.1
3,518,749	-				+1.9
3,518,749	-				-0.1
3,518,768	+				-0.5
3,518,769	-				-0.3
3,518,769	-				+0.1
3,518,769	-				+0.2
3,518,843	+				+1.9
3,518,843	+				+2.0
3,518,843	+				-1.6
3,518,843	+				+0.6
3,518,843	+				-2.3
3,518,843	+				+1.1
3,518,843	+				-1.3
3,518,843	+				+1.2
3,518,844	-				+2.1
3,518,844	-				-0.8
3,518,844	-				+2.0
3,518,844	-				-0.3
3,518,844	-				+0.1
3,518,844	-				-0.5
3,518,925	-		IAI47_16600	0.64	-0.4
3,518,925	-		IAI47_16600	0.64	+0.6
3,518,968	+				-0.4
3,518,968	+				+1.9
3,518,968	+				-0.4
3,518,968	+				-1.6
3,518,968	+				+2.2
3,518,968	+				-0.6
3,518,968	+				-0.6
3,518,969	-				+2.3
3,518,989	+				+0.8
3,518,989	+				-0.3
3,518,990	-				+1.1
3,518,990	-				+0.6
3,519,006	+				-0.9
3,519,017	+				+0.9
3,519,017	+				+0.9
3,519,018	-				-2.1
3,519,018	-				+0.3
3,519,019	+				+1.1
3,519,019	+				-0.6
3,519,019	+				+0.0
3,519,019	+				-0.7
3,519,020	-				-1.4
3,519,020	-				+0.6
3,519,020	-				-1.5
3,519,020	-				-0.1
3,519,020	-				-0.9
3,519,020	-				-2.6
3,519,020	-				+0.6
3,519,052	-				-1.9
3,519,052	-				-0.3
3,519,057	+				+0.9
3,519,057	+				+0.5
3,519,057	+				-1.9
3,519,058	-				+1.3
3,519,058	-				-1.8
3,519,068	+				+2.5
3,519,068	+				+0.9
3,519,068	+				+2.2
3,519,068	+				+0.4
3,519,068	+				+3.0
3,519,068	+				-0.5
3,519,069	-				-0.1
3,519,069	-				-2.0
3,519,069	-				+0.7
3,519,071	+				+0.9
3,519,071	+				-0.8
3,519,071	+				-0.0
3,519,071	+				+1.1
3,519,071	+				-0.5
3,519,071	+				+1.4
3,519,071	+				-0.5
3,519,071	+				+0.6
3,519,072	-				+0.2
3,519,072	-				+0.1
3,519,072	-				-0.7
3,519,072	-				+2.1
3,519,072	-				-1.2
3,519,072	-				+0.6
3,519,075	+				+0.7
3,519,075	+				+2.2
3,519,075	+				+4.4
3,519,075	+				-0.3
3,519,075	+				-0.6
3,519,075	+				-0.8
3,519,075	+				-1.8
3,519,075	+				-1.6
3,519,075	+				-0.1
3,519,075	+				-1.3
3,519,075	+				+0.8
3,519,075	+				+0.6
3,519,075	+				+0.0
3,519,075	+				+0.7
3,519,075	+				+0.4
3,519,075	+				+1.0
3,519,075	+				+5.3
3,519,076	-				+0.6
3,519,076	-				+0.1
3,519,076	-				-1.2
3,519,076	-				+0.3
3,519,076	-				-0.6
3,519,076	-				-2.2
3,519,076	-				-0.9
3,519,076	-				-0.4
3,519,076	-				-1.3
3,519,076	-				-0.6
3,519,076	-				+0.2
3,519,076	-				+0.5
3,519,076	-				+0.4
3,519,076	-				-0.6
3,519,076	-				-0.8
3,519,076	-				-1.4
3,519,095	+				+0.6
3,519,095	+				-2.3
3,519,095	+				-0.5
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3,519,581	-		IAI47_16605	0.46	-1.3