Strain Fitness in Pantoea sp. MT58 around IAI47_14540

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,068,390	+		IAI47_14530	0.84	-1.4
3,068,390	+		IAI47_14530	0.84	-0.6
3,068,390	+		IAI47_14530	0.84	-0.6
3,068,391	-		IAI47_14530	0.84	-0.6
3,068,425	+		IAI47_14530	0.88	+1.3
3,068,425	+		IAI47_14530	0.88	-0.1
3,068,425	+		IAI47_14530	0.88	-0.2
3,068,425	+		IAI47_14530	0.88	-1.6
3,068,425	+		IAI47_14530	0.88	-1.1
3,068,425	+		IAI47_14530	0.88	+0.2
3,068,426	-		IAI47_14530	0.88	+0.1
3,068,426	-		IAI47_14530	0.88	+1.2
3,068,441	-		IAI47_14530	0.90	+4.7
3,068,530	+				+1.4
3,068,530	+				+2.1
3,068,531	-				+0.4
3,068,531	-				+0.6
3,068,531	-				+0.1
3,068,531	-				+0.1
3,068,534	+				-1.0
3,068,534	+				-2.3
3,068,535	-				-0.1
3,068,535	-				+0.2
3,068,535	-				+0.5
3,068,542	-				+1.2
3,068,548	-				+0.3
3,068,548	-				+0.4
3,068,765	+		IAI47_14535	0.26	+1.0
3,068,766	-		IAI47_14535	0.26	+1.6
3,068,766	-		IAI47_14535	0.26	+0.4
3,068,766	-		IAI47_14535	0.26	+1.4
3,068,766	-		IAI47_14535	0.26	+1.8
3,068,831	+		IAI47_14535	0.34	-0.1
3,068,919	+		IAI47_14535	0.44	+1.0
3,068,935	+		IAI47_14535	0.46	-0.1
3,068,935	+		IAI47_14535	0.46	-1.6
3,068,935	+		IAI47_14535	0.46	-0.3
3,068,936	-		IAI47_14535	0.46	+0.4
3,068,936	-		IAI47_14535	0.46	+0.5
3,068,936	-		IAI47_14535	0.46	+1.0
3,068,936	-		IAI47_14535	0.46	+1.6
3,068,936	-		IAI47_14535	0.46	+1.6
3,069,110	+		IAI47_14535	0.67	-1.0
3,069,110	+		IAI47_14535	0.67	+0.7
3,069,121	-		IAI47_14535	0.68	+1.7
3,069,121	-		IAI47_14535	0.68	+0.3
3,069,121	-		IAI47_14535	0.68	+2.4
3,069,155	+		IAI47_14535	0.72	+0.1
3,069,214	-		IAI47_14535	0.80	+1.9
3,069,214	-		IAI47_14535	0.80	-0.5
3,069,220	+		IAI47_14535	0.80	+0.5
3,069,221	-		IAI47_14535	0.80	-0.3
3,069,221	-		IAI47_14535	0.80	-0.7
3,069,249	-		IAI47_14535	0.84	+2.0
3,069,271	+		IAI47_14535	0.86	+0.3
3,069,271	+		IAI47_14535	0.86	+0.9
3,069,291	-		IAI47_14535	0.89	-1.7
3,069,314	-				+1.2
3,069,350	-				-0.9
3,069,364	+				-0.6
3,069,364	+				-0.2
3,069,364	+				-0.8
3,069,365	-				+1.4
3,069,365	-				+0.4
3,069,375	-				+0.2
3,069,375	-				+1.0
3,069,392	+				-0.4
3,069,393	-				+0.0
3,069,438	+				-0.5
3,069,459	+		IAI47_14540	0.12	-1.7
3,069,459	+		IAI47_14540	0.12	-0.2
3,069,459	+		IAI47_14540	0.12	-1.0
3,069,459	+		IAI47_14540	0.12	-0.4
3,069,460	-		IAI47_14540	0.12	-0.1
3,069,460	-		IAI47_14540	0.12	+1.5
3,069,460	-		IAI47_14540	0.12	+1.0
3,069,460	-		IAI47_14540	0.12	+0.6
3,069,460	-		IAI47_14540	0.12	-1.8
3,069,467	+		IAI47_14540	0.13	-0.2
3,069,467	+		IAI47_14540	0.13	-0.7
3,069,468	-		IAI47_14540	0.13	-2.4
3,069,468	-		IAI47_14540	0.13	-0.6
3,069,538	+		IAI47_14540	0.23	+0.4
3,069,538	+		IAI47_14540	0.23	-0.9
3,069,550	+		IAI47_14540	0.25	+0.1
3,069,550	+		IAI47_14540	0.25	-0.4
3,069,550	+		IAI47_14540	0.25	+3.5
3,069,550	+		IAI47_14540	0.25	-2.1
3,069,550	+		IAI47_14540	0.25	+0.5
3,069,550	+		IAI47_14540	0.25	-1.5
3,069,551	-		IAI47_14540	0.25	+1.3
3,069,551	-		IAI47_14540	0.25	+2.8
3,069,551	-		IAI47_14540	0.25	+0.4
3,069,551	-		IAI47_14540	0.25	-0.5
3,069,556	+		IAI47_14540	0.26	-1.5
3,069,556	+		IAI47_14540	0.26	+0.2
3,069,557	-		IAI47_14540	0.26	+0.4
3,069,557	-		IAI47_14540	0.26	+2.4
3,069,567	+		IAI47_14540	0.28	-0.6
3,069,567	+		IAI47_14540	0.28	-1.9
3,069,567	+		IAI47_14540	0.28	-1.8
3,069,568	-		IAI47_14540	0.28	+0.5
3,069,568	-		IAI47_14540	0.28	-1.4
3,069,568	-		IAI47_14540	0.28	-2.1
3,069,568	-		IAI47_14540	0.28	+2.2
3,069,579	+		IAI47_14540	0.29	+0.7
3,069,579	+		IAI47_14540	0.29	+3.0
3,069,686	+		IAI47_14540	0.45	+1.8
3,069,687	-		IAI47_14540	0.46	+2.1
3,069,799	+		IAI47_14540	0.62	-0.1
3,069,799	+		IAI47_14540	0.62	+0.1
3,069,799	+		IAI47_14540	0.62	+0.5
3,069,831	+		IAI47_14540	0.67	+0.8
3,069,832	-		IAI47_14540	0.67	-0.5
3,069,832	-		IAI47_14540	0.67	+0.6
3,069,832	-		IAI47_14540	0.67	+2.3
3,069,832	-		IAI47_14540	0.67	-0.1
3,069,889	+		IAI47_14540	0.76	-1.6
3,070,068	+				+0.4
3,070,122	+				-0.9
3,070,122	+				+0.4
3,070,122	+				+0.2
3,070,122	+				+0.6
3,070,122	+				+0.2
3,070,122	+				+0.2
3,070,123	-				-0.9
3,070,123	-				-0.8
3,070,123	-				-0.9
3,070,123	-				-1.5
3,070,123	-				-0.0
3,070,130	+				+1.3
3,070,130	+				+2.0
3,070,130	+				-0.9
3,070,130	+				-0.0
3,070,130	+				+0.4
3,070,130	+				-1.6
3,070,130	+				-1.4
3,070,130	+				+1.2
3,070,130	+				-0.3
3,070,130	+				-0.3
3,070,130	+				+2.2
3,070,130	+				+0.4
3,070,130	+				-0.1
3,070,130	+				-0.6
3,070,130	+				-1.5
3,070,131	-				+0.1
3,070,131	-				-0.1
3,070,131	-				-0.1
3,070,131	-				+1.4
3,070,131	-				-0.4
3,070,131	-				-1.1
3,070,131	-				-2.0
3,070,131	-				-1.4
3,070,131	-				+0.7
3,070,131	-				-1.7
3,070,131	-				+0.3
3,070,134	+				+0.6
3,070,134	+				-1.6
3,070,134	+				+0.6
3,070,134	+				+1.4
3,070,134	+				+0.2
3,070,134	+				-1.4
3,070,134	+				+0.2
3,070,135	-				-1.1
3,070,135	-				+2.9
3,070,135	-				-0.6
3,070,135	-				+0.8
3,070,135	-				-1.0
3,070,135	-				+0.2
3,070,135	-				+0.5
3,070,135	-				+0.7
3,070,164	-				+0.6
3,070,176	-				+0.7
3,070,181	+				-1.0
3,070,185	-				+1.9
3,070,186	+				-0.3
3,070,186	+				+2.3
3,070,186	+				-0.9
3,070,186	+				+1.5
3,070,208	+				+2.1
3,070,208	+				-0.5
3,070,209	-				-1.0
3,070,209	-				+0.5
3,070,209	-				+0.4
3,070,209	-				-0.5
3,070,222	+				-1.1
3,070,222	+				-1.9
3,070,232	+				+0.4
3,070,232	+				-0.1
3,070,233	-				+1.9
3,070,236	+				+1.5
3,070,236	+				+0.2
3,070,237	-				-0.1
3,070,237	-				+0.0
3,070,237	-				+0.7
3,070,359	+				-0.3
3,070,359	+				+0.9
3,070,359	+				+0.9
3,070,360	-				-0.7
3,070,360	-				-1.1
3,070,365	+				+0.0
3,070,365	+				+0.0
3,070,366	-				-1.3
3,070,375	+				+0.5
3,070,376	-				+0.3
3,070,378	-				+1.4
3,070,390	+				+1.6
3,070,390	+				+0.4
3,070,390	+				+2.3
3,070,390	+				-0.1
3,070,390	+				-1.6
3,070,390	+				-0.6
3,070,390	+				+1.9
3,070,390	+				-0.4
3,070,391	-				-1.0
3,070,391	-				-1.3
3,070,391	-				-0.4
3,070,391	-				+1.6
3,070,414	+				-2.0
3,070,415	-				-0.9
3,070,415	-				+0.9
3,070,415	-				-2.9
3,070,469	-		IAI47_14545	0.22	-0.6
3,070,484	+		IAI47_14545	0.26	-0.6
3,070,503	+		IAI47_14545	0.32	+0.8
3,070,503	+		IAI47_14545	0.32	+0.7
3,070,504	-		IAI47_14545	0.32	-2.4
3,070,504	-		IAI47_14545	0.32	+2.7
3,070,504	-		IAI47_14545	0.32	+1.2
3,070,530	+		IAI47_14545	0.39	+1.3
3,070,530	+		IAI47_14545	0.39	-0.5
3,070,530	+		IAI47_14545	0.39	+0.1
3,070,531	-		IAI47_14545	0.40	-0.7
3,070,565	+		IAI47_14545	0.49	-0.6
3,070,580	-		IAI47_14545	0.53	+0.0
3,070,590	+		IAI47_14545	0.56	-0.6
3,070,635	+		IAI47_14545	0.69	-0.1
3,070,636	-		IAI47_14545	0.69	+0.7
3,070,749	+				-1.3
3,070,750	-				+0.1
3,070,772	-				+0.7
3,070,786	-				+2.4
3,070,786	-				-2.1
3,070,792	-				-0.5
3,070,806	-				+1.1
3,070,806	-				-0.9
3,070,820	+				+0.7
3,070,872	+				+0.8
3,070,872	+				-0.3
3,070,872	+				+0.4
3,070,873	-				+0.4
3,070,873	-				-0.2
3,070,876	+				-0.9
3,070,876	+				-0.7
3,070,876	+				-0.2
3,070,876	+				-2.2
3,070,876	+				+0.4
3,070,876	+				+0.5
3,070,877	-				+1.2
3,070,877	-				+1.0
3,070,877	-				-1.4
3,070,877	-				+0.2
3,070,877	-				-2.1
3,070,877	-				-0.6
3,070,877	-				+0.3
3,070,877	-				+1.1
3,070,901	+				+1.7
3,070,921	+				+0.3
3,070,921	+				+0.9
3,070,921	+				+0.5
3,070,921	+				-1.4
3,070,921	+				-0.5
3,070,922	-				+1.1
3,070,922	-				+0.4
3,070,922	-				-1.5
3,070,933	+		IAI47_14550	0.11	+0.1
3,070,933	+		IAI47_14550	0.11	+1.4
3,070,933	+		IAI47_14550	0.11	+1.2
3,070,934	-		IAI47_14550	0.11	+2.3
3,070,934	-		IAI47_14550	0.11	-1.9
3,070,934	-		IAI47_14550	0.11	-1.5
3,070,934	-		IAI47_14550	0.11	-1.8
3,070,934	-		IAI47_14550	0.11	+1.0
3,070,934	-		IAI47_14550	0.11	+0.4
3,070,934	-		IAI47_14550	0.11	-0.8
3,070,934	-		IAI47_14550	0.11	+0.4
3,070,937	+		IAI47_14550	0.12	+0.9
3,070,937	+		IAI47_14550	0.12	-0.0
3,070,937	+		IAI47_14550	0.12	-0.5
3,070,937	+		IAI47_14550	0.12	-1.4
3,070,937	+		IAI47_14550	0.12	-0.7
3,070,937	+		IAI47_14550	0.12	+0.4
3,070,938	-		IAI47_14550	0.12	-0.1
3,070,938	-		IAI47_14550	0.12	-0.6
3,070,938	-		IAI47_14550	0.12	-1.9
3,070,941	+		IAI47_14550	0.13	+2.6
3,070,941	+		IAI47_14550	0.13	+0.7
3,070,941	+		IAI47_14550	0.13	+0.0
3,070,941	+		IAI47_14550	0.13	-1.6
3,070,941	+		IAI47_14550	0.13	-0.9
3,070,941	+		IAI47_14550	0.13	+1.6
3,070,941	+		IAI47_14550	0.13	+0.1
3,070,941	+		IAI47_14550	0.13	+0.4
3,070,941	+		IAI47_14550	0.13	-0.1
3,070,941	+		IAI47_14550	0.13	+0.7
3,070,941	+		IAI47_14550	0.13	-0.1
3,070,942	-		IAI47_14550	0.13	-0.4
3,070,942	-		IAI47_14550	0.13	+0.8
3,070,942	-		IAI47_14550	0.13	-1.2
3,070,942	-		IAI47_14550	0.13	+1.3
3,070,942	-		IAI47_14550	0.13	+0.9
3,070,942	-		IAI47_14550	0.13	-1.0
3,070,978	-		IAI47_14550	0.23	-0.0
3,071,035	+		IAI47_14550	0.38	-0.4
3,071,036	-		IAI47_14550	0.38	-1.6