Strain Fitness in Pantoea sp. MT58 around IAI47_14110

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,980,099	+		IAI47_14105	0.31	+0.4
2,980,099	+		IAI47_14105	0.31	+2.1
2,980,100	-		IAI47_14105	0.31	-1.1
2,980,139	+		IAI47_14105	0.35	-0.6
2,980,154	-		IAI47_14105	0.36	-0.0
2,980,176	-		IAI47_14105	0.38	+1.0
2,980,176	-		IAI47_14105	0.38	+0.8
2,980,207	+		IAI47_14105	0.41	+0.6
2,980,207	+		IAI47_14105	0.41	+0.8
2,980,208	-		IAI47_14105	0.41	+4.4
2,980,219	+		IAI47_14105	0.42	+0.5
2,980,219	+		IAI47_14105	0.42	-2.3
2,980,220	-		IAI47_14105	0.42	-1.0
2,980,220	-		IAI47_14105	0.42	+1.0
2,980,246	+		IAI47_14105	0.45	+1.0
2,980,246	+		IAI47_14105	0.45	-1.4
2,980,247	-		IAI47_14105	0.45	-0.1
2,980,312	-		IAI47_14105	0.51	-1.5
2,980,323	+		IAI47_14105	0.52	+0.5
2,980,323	+		IAI47_14105	0.52	-0.0
2,980,323	+		IAI47_14105	0.52	-1.0
2,980,324	-		IAI47_14105	0.52	-0.5
2,980,324	-		IAI47_14105	0.52	+0.4
2,980,324	-		IAI47_14105	0.52	+1.4
2,980,324	-		IAI47_14105	0.52	-2.2
2,980,324	-		IAI47_14105	0.52	+0.4
2,980,324	-		IAI47_14105	0.52	+0.0
2,980,384	+		IAI47_14105	0.57	-1.5
2,980,385	-		IAI47_14105	0.57	+0.1
2,980,429	+		IAI47_14105	0.61	-1.3
2,980,501	+		IAI47_14105	0.68	+2.1
2,980,504	+		IAI47_14105	0.68	-0.0
2,980,505	-		IAI47_14105	0.68	+0.8
2,980,555	+		IAI47_14105	0.73	-0.2
2,980,564	+		IAI47_14105	0.74	+0.9
2,980,565	-		IAI47_14105	0.74	+0.6
2,980,685	+		IAI47_14105	0.85	+1.8
2,980,686	-		IAI47_14105	0.85	+2.2
2,980,724	+		IAI47_14105	0.88	+1.1
2,980,724	+		IAI47_14105	0.88	-1.2
2,980,724	+		IAI47_14105	0.88	+0.4
2,980,724	+		IAI47_14105	0.88	+1.3
2,980,724	+		IAI47_14105	0.88	-0.6
2,980,725	-		IAI47_14105	0.88	+0.6
2,980,725	-		IAI47_14105	0.88	-0.6
2,980,750	+				+0.5
2,980,750	+				-1.1
2,980,750	+				+2.8
2,980,751	-				-0.6
2,980,751	-				-0.2
2,980,788	+				-0.7
2,980,789	-				+0.4
2,980,789	-				-0.7
2,980,789	-				+1.3
2,980,817	+				+2.0
2,980,828	+				-0.5
2,980,829	-				-1.8
2,980,909	+				+0.7
2,980,909	+				-0.7
2,980,910	-				-0.1
2,980,910	-				-0.5
2,980,910	-				-2.8
2,980,913	+				+0.1
2,980,914	-				-2.7
2,980,943	+				+0.1
2,980,943	+				+1.1
2,980,943	+				+0.4
2,980,944	-				-0.2
2,980,944	-				-2.3
2,981,020	+				-0.2
2,981,020	+				+1.9
2,981,021	-				+1.0
2,981,021	-				-1.3
2,981,089	+				+0.3
2,981,089	+				-0.4
2,981,089	+				-0.7
2,981,089	+				-0.0
2,981,089	+				+0.6
2,981,089	+				-0.3
2,981,089	+				+0.1
2,981,089	+				-0.5
2,981,090	-				+1.6
2,981,090	-				-0.5
2,981,104	+				+1.0
2,981,104	+				-1.8
2,981,104	+				+1.8
2,981,120	+				-0.5
2,981,120	+				-0.8
2,981,120	+				-0.2
2,981,120	+				+1.9
2,981,121	-				+1.0
2,981,121	-				-1.4
2,981,121	-				-1.4
2,981,127	+				+0.8
2,981,127	+				+0.5
2,981,127	+				-0.5
2,981,128	-				-1.8
2,981,128	-				+1.3
2,981,128	-				-1.2
2,981,128	-				-0.4
2,981,128	-				-1.3
2,981,128	-				-1.1
2,981,128	-				-0.6
2,981,128	-				-0.2
2,981,170	+				+1.2
2,981,170	+				-0.5
2,981,170	+				-0.7
2,981,171	-				-0.4
2,981,171	-				+0.4
2,981,171	-				-1.5
2,981,171	-				+2.6
2,981,171	-				-1.5
2,981,171	-				-0.4
2,981,174	+				-0.4
2,981,204	-				+0.4
2,981,204	-				-0.2
2,981,204	-				-1.4
2,981,204	-				+0.4
2,981,204	-				+0.8
2,981,204	-				+2.1
2,981,204	-				-0.4
2,981,204	-				-0.9
2,981,204	-				-1.9
2,981,204	-				+1.1
2,981,204	-				-0.1
2,981,234	+		IAI47_14110	0.11	+1.6
2,981,235	-		IAI47_14110	0.11	+0.6
2,981,235	-		IAI47_14110	0.11	+1.4
2,981,270	+		IAI47_14110	0.14	+0.5
2,981,312	+		IAI47_14110	0.17	-1.5
2,981,312	+		IAI47_14110	0.17	+0.6
2,981,312	+		IAI47_14110	0.17	-0.8
2,981,312	+		IAI47_14110	0.17	-0.1
2,981,313	-		IAI47_14110	0.17	-1.0
2,981,313	-		IAI47_14110	0.17	-1.3
2,981,313	-		IAI47_14110	0.17	+1.0
2,981,313	-		IAI47_14110	0.17	-0.7
2,981,378	+		IAI47_14110	0.23	+0.4
2,981,379	-		IAI47_14110	0.23	+2.8
2,981,393	+		IAI47_14110	0.24	+0.2
2,981,393	+		IAI47_14110	0.24	+3.5
2,981,394	-		IAI47_14110	0.24	+1.7
2,981,416	+		IAI47_14110	0.25	+0.4
2,981,416	+		IAI47_14110	0.25	+0.3
2,981,416	+		IAI47_14110	0.25	-1.6
2,981,416	+		IAI47_14110	0.25	+1.4
2,981,416	+		IAI47_14110	0.25	+0.9
2,981,416	+		IAI47_14110	0.25	+0.7
2,981,416	+		IAI47_14110	0.25	+0.2
2,981,417	-		IAI47_14110	0.26	+0.3
2,981,506	+		IAI47_14110	0.32	-0.6
2,981,506	+		IAI47_14110	0.32	+1.3
2,981,506	+		IAI47_14110	0.32	+0.2
2,981,507	-		IAI47_14110	0.33	-0.4
2,981,507	-		IAI47_14110	0.33	-0.7
2,981,507	-		IAI47_14110	0.33	+1.6
2,981,601	+		IAI47_14110	0.40	-0.5
2,981,602	-		IAI47_14110	0.40	-1.7
2,981,602	-		IAI47_14110	0.40	-0.8
2,981,602	-		IAI47_14110	0.40	+0.3
2,981,602	-		IAI47_14110	0.40	+1.2
2,981,602	-		IAI47_14110	0.40	+1.2
2,981,662	+		IAI47_14110	0.45	-1.0
2,981,662	+		IAI47_14110	0.45	-1.3
2,981,663	-		IAI47_14110	0.45	+0.8
2,981,699	+		IAI47_14110	0.47	+0.6
2,981,699	+		IAI47_14110	0.47	+2.8
2,981,699	+		IAI47_14110	0.47	+1.4
2,981,699	+		IAI47_14110	0.47	+3.2
2,981,699	+		IAI47_14110	0.47	+0.0
2,981,699	+		IAI47_14110	0.47	+1.3
2,981,699	+		IAI47_14110	0.47	-0.4
2,981,700	-		IAI47_14110	0.48	+0.8
2,981,700	-		IAI47_14110	0.48	+0.7
2,981,700	-		IAI47_14110	0.48	+0.3
2,981,700	-		IAI47_14110	0.48	+0.8
2,981,700	-		IAI47_14110	0.48	-1.4
2,981,700	-		IAI47_14110	0.48	-0.4
2,981,700	-		IAI47_14110	0.48	+0.6
2,981,700	-		IAI47_14110	0.48	-0.8
2,981,700	-		IAI47_14110	0.48	+2.5
2,981,700	-		IAI47_14110	0.48	-1.0
2,981,700	-		IAI47_14110	0.48	-1.9
2,981,700	-		IAI47_14110	0.48	-0.7
2,981,711	+		IAI47_14110	0.48	-0.7
2,981,712	-		IAI47_14110	0.48	-1.3
2,981,783	+		IAI47_14110	0.54	+1.2
2,981,824	+		IAI47_14110	0.57	-0.2
2,981,824	+		IAI47_14110	0.57	-1.8
2,981,824	+		IAI47_14110	0.57	-1.1
2,981,825	-		IAI47_14110	0.57	+0.3
2,981,844	+		IAI47_14110	0.59	-1.8
2,981,998	-		IAI47_14110	0.71	-0.4
2,982,002	+		IAI47_14110	0.71	+0.6
2,982,002	+		IAI47_14110	0.71	-0.5
2,982,003	-		IAI47_14110	0.71	-0.1
2,982,003	-		IAI47_14110	0.71	+0.4
2,982,003	-		IAI47_14110	0.71	+0.8
2,982,009	-		IAI47_14110	0.72	+1.2
2,982,022	+		IAI47_14110	0.73	+1.0
2,982,022	+		IAI47_14110	0.73	+0.1
2,982,023	-		IAI47_14110	0.73	+1.0
2,982,023	-		IAI47_14110	0.73	-1.7
2,982,023	-		IAI47_14110	0.73	+0.8
2,982,023	-		IAI47_14110	0.73	+1.1
2,982,023	-		IAI47_14110	0.73	-0.2
2,982,040	+		IAI47_14110	0.74	+1.1
2,982,040	+		IAI47_14110	0.74	+2.5
2,982,041	-		IAI47_14110	0.74	+1.9
2,982,041	-		IAI47_14110	0.74	+0.6
2,982,044	+		IAI47_14110	0.74	-0.6
2,982,045	-		IAI47_14110	0.74	+0.1
2,982,055	+		IAI47_14110	0.75	+0.6
2,982,055	+		IAI47_14110	0.75	+1.1
2,982,056	-		IAI47_14110	0.75	+2.1
2,982,056	-		IAI47_14110	0.75	-0.8
2,982,065	+		IAI47_14110	0.76	+2.5
2,982,065	+		IAI47_14110	0.76	-0.7
2,982,066	-		IAI47_14110	0.76	-0.3
2,982,116	+		IAI47_14110	0.80	+0.3
2,982,204	-		IAI47_14110	0.87	+2.0
2,982,204	-		IAI47_14110	0.87	-0.4
2,982,239	+		IAI47_14110	0.89	+1.1
2,982,239	+		IAI47_14110	0.89	-0.6
2,982,240	-		IAI47_14110	0.90	+1.1
2,982,240	-		IAI47_14110	0.90	+1.3
2,982,255	+				+0.0
2,982,255	+				+0.6
2,982,255	+				+2.0
2,982,255	+				-1.5
2,982,255	+				+0.1
2,982,256	-				-0.4
2,982,256	-				-0.1
2,982,256	-				+0.4
2,982,256	-				-2.2
2,982,280	+				+0.2
2,982,280	+				-0.7
2,982,281	-				-1.7
2,982,281	-				-0.4
2,982,281	-				-2.8
2,982,281	-				+0.0
2,982,282	+				-1.8
2,982,282	+				+0.1
2,982,282	+				-0.3
2,982,283	-				+0.0
2,982,283	-				+2.6
2,982,283	-				-1.6
2,982,312	-				-0.2
2,982,312	-				+1.0
2,982,404	-				-0.7
2,982,524	-				-1.7
2,982,528	+				-0.9
2,982,528	+				+3.3
2,982,528	+				+0.4
2,982,528	+				-1.9
2,982,528	+				+1.1
2,982,528	+				-1.4
2,982,529	-				-0.3
2,982,529	-				-2.0
2,982,529	-				+1.5
2,982,529	-				-0.1
2,982,538	+				-0.5
2,982,551	-				+0.0
2,982,560	-				+0.8
2,982,591	+				+0.8
2,982,627	+				+0.9
2,982,627	+				-1.3
2,982,627	+				-1.1
2,982,627	+				-3.0
2,982,627	+				-0.7
2,982,628	-				+0.4
2,982,628	-				+2.2
2,982,628	-				+2.0
2,982,628	-				+2.8
2,982,628	-				-0.4
2,982,648	+				-0.5
2,982,649	-				+1.7
2,982,694	-				+0.7
2,982,771	+				+0.3
2,982,772	-				-0.7
2,982,909	+		IAI47_14115	0.29	+1.4
2,982,909	+		IAI47_14115	0.29	+1.0
2,983,008	+		IAI47_14115	0.45	-0.5
2,983,009	-		IAI47_14115	0.46	+0.8
2,983,009	-		IAI47_14115	0.46	+1.3
2,983,009	-		IAI47_14115	0.46	-0.5
2,983,012	+		IAI47_14115	0.46	+1.7
2,983,012	+		IAI47_14115	0.46	-1.9
2,983,012	+		IAI47_14115	0.46	-0.3
2,983,012	+		IAI47_14115	0.46	-1.3
2,983,013	-		IAI47_14115	0.46	+0.4
2,983,013	-		IAI47_14115	0.46	+1.5
2,983,013	-		IAI47_14115	0.46	-0.8
2,983,013	-		IAI47_14115	0.46	+0.8
2,983,014	-		IAI47_14115	0.46	+0.3
2,983,077	+		IAI47_14115	0.57	+1.2
2,983,078	-		IAI47_14115	0.57	-0.7
2,983,078	-		IAI47_14115	0.57	-0.7
2,983,078	-		IAI47_14115	0.57	+0.8
2,983,078	-		IAI47_14115	0.57	-2.1
2,983,152	-		IAI47_14115	0.70	+1.4
2,983,196	+		IAI47_14115	0.77	-0.9
2,983,196	+		IAI47_14115	0.77	+0.0
2,983,196	+		IAI47_14115	0.77	+0.4
2,983,196	+		IAI47_14115	0.77	+0.3
2,983,197	-		IAI47_14115	0.77	-0.7
2,983,197	-		IAI47_14115	0.77	+0.8
2,983,295	-				-0.5
2,983,332	-				-0.4
2,983,344	+				-2.4
2,983,344	+				+0.5
2,983,344	+				-2.4
2,983,344	+				-0.6
2,983,344	+				-0.6
2,983,345	-				+0.1
2,983,345	-				+1.6
2,983,345	-				-0.6
2,983,345	-				-0.4
2,983,345	-				+1.9
2,983,360	+				-1.6
2,983,360	+				-1.6
2,983,360	+				-0.2
2,983,360	+				-0.2
2,983,361	-				+0.4
2,983,361	-				+0.7