Strain Fitness in Pantoea sp. MT58 around IAI47_12580

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,646,935	+		IAI47_12565	0.85	-0.1
2,646,935	+		IAI47_12565	0.85	+0.1
2,646,935	+		IAI47_12565	0.85	-0.9
2,646,936	-		IAI47_12565	0.85	-0.2
2,646,936	-		IAI47_12565	0.85	+0.4
2,646,936	-		IAI47_12565	0.85	-1.5
2,646,936	-		IAI47_12565	0.85	-1.1
2,646,943	+		IAI47_12565	0.85	+0.9
2,646,943	+		IAI47_12565	0.85	+3.3
2,646,943	+		IAI47_12565	0.85	-2.4
2,646,943	+		IAI47_12565	0.85	-0.2
2,646,944	-		IAI47_12565	0.85	-0.4
2,646,944	-		IAI47_12565	0.85	+1.1
2,646,944	-		IAI47_12565	0.85	-0.6
2,647,122	+				-0.6
2,647,123	-				-2.1
2,647,191	+				+0.5
2,647,200	+				+1.1
2,647,207	+				-1.4
2,647,207	+				+1.9
2,647,208	-				-0.2
2,647,236	-				+0.6
2,647,236	-				+1.3
2,647,255	+				-1.6
2,647,255	+				-1.1
2,647,255	+				+0.8
2,647,267	+				-0.1
2,647,267	+				+0.2
2,647,267	+				+1.0
2,647,267	+				+1.0
2,647,268	-				-1.1
2,647,268	-				-1.4
2,647,268	-				+0.2
2,647,321	+				+1.2
2,647,322	-				+0.3
2,647,322	-				-1.6
2,647,322	-				+2.3
2,647,323	+				+0.1
2,647,323	+				+1.0
2,647,323	+				-1.7
2,647,323	+				-1.1
2,647,324	-				+0.3
2,647,324	-				+1.4
2,647,324	-				+2.1
2,647,324	-				-0.5
2,647,449	-				+0.5
2,647,449	-				-0.3
2,647,522	-		IAI47_12570	0.76	+2.6
2,647,607	-				-1.2
2,647,820	-				+0.5
2,647,828	-				-0.5
2,647,876	+				-0.6
2,647,876	+				+0.3
2,647,877	-				+0.9
2,647,889	+				-1.9
2,647,889	+				+0.1
2,647,889	+				-1.4
2,647,889	+				+0.2
2,647,889	+				+0.2
2,647,889	+				-0.3
2,647,890	-				-2.7
2,647,890	-				+1.0
2,647,890	-				+0.4
2,647,893	+				-1.9
2,647,893	+				-0.9
2,647,894	-				-0.1
2,647,894	-				-1.3
2,647,894	-				+1.5
2,647,894	-				+0.2
2,647,905	+				-1.7
2,647,905	+				+0.1
2,647,905	+				+0.9
2,647,905	+				+0.6
2,647,905	+				-0.2
2,647,906	-				-0.3
2,647,906	-				-0.2
2,647,908	+				+1.2
2,647,908	+				+1.0
2,647,908	+				+2.2
2,647,908	+				-1.2
2,647,908	+				+2.0
2,647,908	+				+0.9
2,647,909	-				+1.0
2,647,909	-				-1.8
2,647,909	-				-1.8
2,647,920	+				-0.4
2,647,920	+				-1.0
2,647,996	+				-0.5
2,647,996	+				-1.2
2,647,996	+				+2.5
2,647,996	+				+0.0
2,647,996	+				-0.9
2,647,997	-				-0.4
2,648,000	+		IAI47_12580	0.10	+0.5
2,648,000	+		IAI47_12580	0.10	+0.1
2,648,001	-		IAI47_12580	0.10	+1.6
2,648,001	-		IAI47_12580	0.10	+0.0
2,648,038	+		IAI47_12580	0.16	-1.5
2,648,045	-		IAI47_12580	0.17	+1.3
2,648,105	+		IAI47_12580	0.26	+0.4
2,648,105	+		IAI47_12580	0.26	-2.0
2,648,105	+		IAI47_12580	0.26	-1.6
2,648,106	-		IAI47_12580	0.26	+0.2
2,648,106	-		IAI47_12580	0.26	-1.2
2,648,106	-		IAI47_12580	0.26	+1.6
2,648,106	-		IAI47_12580	0.26	+0.7
2,648,106	-		IAI47_12580	0.26	+2.0
2,648,106	-		IAI47_12580	0.26	+0.2
2,648,121	+		IAI47_12580	0.29	+0.2
2,648,122	-		IAI47_12580	0.29	-0.3
2,648,122	-		IAI47_12580	0.29	-0.7
2,648,122	-		IAI47_12580	0.29	+0.7
2,648,126	+		IAI47_12580	0.29	+0.7
2,648,126	+		IAI47_12580	0.29	-1.7
2,648,126	+		IAI47_12580	0.29	+0.1
2,648,127	-		IAI47_12580	0.30	+0.0
2,648,127	-		IAI47_12580	0.30	+0.8
2,648,137	+		IAI47_12580	0.31	+0.2
2,648,138	-		IAI47_12580	0.31	+0.3
2,648,152	+		IAI47_12580	0.33	-0.1
2,648,152	+		IAI47_12580	0.33	-0.2
2,648,173	+		IAI47_12580	0.37	-1.1
2,648,173	+		IAI47_12580	0.37	-0.9
2,648,189	+		IAI47_12580	0.39	-1.9
2,648,189	+		IAI47_12580	0.39	-1.3
2,648,190	-		IAI47_12580	0.39	+0.4
2,648,203	+		IAI47_12580	0.41	-0.3
2,648,204	-		IAI47_12580	0.41	-1.8
2,648,220	+		IAI47_12580	0.44	+1.5
2,648,221	-		IAI47_12580	0.44	-1.3
2,648,294	+		IAI47_12580	0.55	-0.4
2,648,294	+		IAI47_12580	0.55	+0.5
2,648,295	-		IAI47_12580	0.55	-1.9
2,648,295	-		IAI47_12580	0.55	+1.5
2,648,317	+		IAI47_12580	0.59	-1.8
2,648,317	+		IAI47_12580	0.59	-0.6
2,648,317	+		IAI47_12580	0.59	-2.3
2,648,317	+		IAI47_12580	0.59	+0.4
2,648,317	+		IAI47_12580	0.59	+0.2
2,648,317	+		IAI47_12580	0.59	-1.5
2,648,318	-		IAI47_12580	0.59	+1.2
2,648,318	-		IAI47_12580	0.59	+0.1
2,648,318	-		IAI47_12580	0.59	+0.7
2,648,358	+		IAI47_12580	0.65	-0.2
2,648,359	-		IAI47_12580	0.65	+0.8
2,648,416	+		IAI47_12580	0.74	-0.2
2,648,417	-		IAI47_12580	0.74	-0.4
2,648,417	-		IAI47_12580	0.74	-1.0
2,648,432	-		IAI47_12580	0.76	+0.7
2,648,498	+		IAI47_12580	0.86	+1.2
2,648,498	+		IAI47_12580	0.86	-0.5
2,648,498	+		IAI47_12580	0.86	-1.5
2,648,498	+		IAI47_12580	0.86	+1.8
2,648,498	+		IAI47_12580	0.86	-0.5
2,648,498	+		IAI47_12580	0.86	+0.1
2,648,498	+		IAI47_12580	0.86	-0.7
2,648,499	-		IAI47_12580	0.86	-2.6
2,648,499	-		IAI47_12580	0.86	-0.7
2,648,499	-		IAI47_12580	0.86	+0.7
2,648,499	-		IAI47_12580	0.86	-1.1
2,648,499	-		IAI47_12580	0.86	-1.7
2,648,499	-		IAI47_12580	0.86	+0.2
2,648,499	-		IAI47_12580	0.86	+0.3
2,648,522	+				+0.6
2,648,522	+				+0.6
2,648,522	+				-0.3
2,648,522	+				+0.7
2,648,522	+				-1.7
2,648,522	+				-1.1
2,648,523	-				+0.8
2,648,523	-				+0.6
2,648,523	-				+0.2
2,648,534	+				+0.7
2,648,534	+				+1.2
2,648,534	+				-1.1
2,648,535	-				-0.8
2,648,535	-				-0.3
2,648,535	-				+1.5
2,648,535	-				+2.1
2,648,558	-				+1.0
2,648,585	+				+1.1
2,648,609	+				-1.5
2,648,609	+				-0.4
2,648,609	+				-1.3
2,648,610	-				-1.4
2,648,640	+				-0.1
2,648,640	+				+1.4
2,648,659	+				+0.6
2,648,677	-				-1.3
2,649,079	+		IAI47_12590	0.21	-0.3
2,649,079	+		IAI47_12590	0.21	-0.4
2,649,080	-		IAI47_12590	0.22	+2.8
2,649,112	+		IAI47_12590	0.33	-0.8
2,649,113	-		IAI47_12590	0.33	+1.3
2,649,113	-		IAI47_12590	0.33	+3.0
2,649,195	+		IAI47_12590	0.63	+0.7
2,649,232	+		IAI47_12590	0.76	-1.7
2,649,232	+		IAI47_12590	0.76	+0.8
2,649,232	+		IAI47_12590	0.76	+1.1
2,649,232	+		IAI47_12590	0.76	+0.2
2,649,232	+		IAI47_12590	0.76	+0.1
2,649,233	-		IAI47_12590	0.76	+1.5
2,649,233	-		IAI47_12590	0.76	-2.0
2,649,233	-		IAI47_12590	0.76	+1.0
2,649,233	-		IAI47_12590	0.76	-0.2
2,649,237	+		IAI47_12590	0.78	+1.0
2,649,238	-		IAI47_12590	0.78	+0.6
2,649,280	+				+0.1
2,649,299	+				+1.2
2,649,299	+				-1.4
2,649,299	+				+0.4
2,649,299	+				+0.3
2,649,299	+				+1.2
2,649,299	+				-0.7
2,649,299	+				+0.6
2,649,299	+				+2.3
2,649,300	-				+3.8
2,649,369	+				+0.1
2,649,369	+				-0.6
2,649,369	+				+0.9
2,649,369	+				+1.2
2,649,369	+				-0.4
2,649,370	-				+1.4
2,649,370	-				-0.7
2,649,375	+				-0.9
2,649,375	+				+0.0
2,649,375	+				-2.9
2,649,375	+				-0.6
2,649,375	+				+0.4
2,649,376	-				+0.8
2,649,376	-				+2.4
2,649,376	-				+0.9
2,649,383	+				-0.1
2,649,383	+				+0.5
2,649,383	+				-1.2
2,649,383	+				-0.7
2,649,383	+				-0.5
2,649,383	+				+2.1
2,649,384	-				-0.9
2,649,384	-				-1.1
2,649,384	-				-1.2
2,649,384	-				-0.3
2,649,384	-				+0.8
2,649,384	-				+0.2
2,649,384	-				+2.4
2,649,479	+				+0.2
2,649,480	-				+2.4
2,649,546	+		IAI47_12595	0.14	+0.2
2,649,546	+		IAI47_12595	0.14	+0.0
2,649,547	-		IAI47_12595	0.14	+0.2
2,649,547	-		IAI47_12595	0.14	+0.7
2,649,547	-		IAI47_12595	0.14	-0.0