Strain Fitness in Pantoea sp. MT58 around IAI47_12380

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,612,594	+		IAI47_12365	0.22	-1.6
2,612,594	+		IAI47_12365	0.22	+0.8
2,612,594	+		IAI47_12365	0.22	+0.1
2,612,594	+		IAI47_12365	0.22	-0.8
2,612,594	+		IAI47_12365	0.22	+1.6
2,612,594	+		IAI47_12365	0.22	-0.6
2,612,594	+		IAI47_12365	0.22	-1.3
2,612,595	-		IAI47_12365	0.22	-0.8
2,612,595	-		IAI47_12365	0.22	+0.1
2,612,595	-		IAI47_12365	0.22	-2.9
2,612,595	-		IAI47_12365	0.22	+2.4
2,612,595	-		IAI47_12365	0.22	-0.9
2,612,596	+		IAI47_12365	0.22	-1.1
2,612,596	+		IAI47_12365	0.22	-0.2
2,612,596	+		IAI47_12365	0.22	-0.4
2,612,596	+		IAI47_12365	0.22	+0.7
2,612,596	+		IAI47_12365	0.22	-0.6
2,612,596	+				-1.7
2,612,596	+		IAI47_12365	0.22	-0.1
2,612,596	+		IAI47_12365	0.22	+0.8
2,612,596	+		IAI47_12365	0.22	-1.0
2,612,596	+		IAI47_12365	0.22	-0.4
2,612,596	+		IAI47_12365	0.22	-1.1
2,612,596	+		IAI47_12365	0.22	-1.4
2,612,597	-		IAI47_12365	0.22	-2.2
2,612,597	-		IAI47_12365	0.22	+0.5
2,612,597	-		IAI47_12365	0.22	-1.1
2,612,597	-		IAI47_12365	0.22	+0.4
2,612,597	-		IAI47_12365	0.22	-1.2
2,612,597	-		IAI47_12365	0.22	+0.2
2,612,597	-		IAI47_12365	0.22	+1.2
2,612,597	-		IAI47_12365	0.22	-0.9
2,612,597	-		IAI47_12365	0.22	+1.1
2,612,597	-		IAI47_12365	0.22	+0.4
2,612,659	+		IAI47_12365	0.33	+0.8
2,612,659	+		IAI47_12365	0.33	+4.0
2,612,659	+		IAI47_12365	0.33	+0.3
2,612,659	+		IAI47_12365	0.33	-0.2
2,612,659	+		IAI47_12365	0.33	+2.0
2,612,659	+		IAI47_12365	0.33	+2.4
2,612,659	+		IAI47_12365	0.33	+1.2
2,612,660	-		IAI47_12365	0.33	-0.6
2,612,660	-		IAI47_12365	0.33	-0.3
2,612,660	-		IAI47_12365	0.33	-2.5
2,612,660	-		IAI47_12365	0.33	+1.9
2,612,705	+		IAI47_12365	0.41	+0.4
2,612,705	+		IAI47_12365	0.41	+0.0
2,612,705	+		IAI47_12365	0.41	-0.2
2,612,705	+		IAI47_12365	0.41	+3.0
2,612,705	+		IAI47_12365	0.41	+1.9
2,612,782	+		IAI47_12365	0.55	-0.2
2,612,809	-		IAI47_12365	0.60	+0.4
2,612,825	+		IAI47_12365	0.63	+1.0
2,612,826	-		IAI47_12365	0.63	-0.8
2,612,826	-		IAI47_12365	0.63	-0.2
2,612,999	+				+0.8
2,612,999	+				+2.1
2,613,000	-				-1.4
2,613,023	+				-1.4
2,613,024	-				+1.6
2,613,024	-				+0.3
2,613,024	-				+1.7
2,613,129	-		IAI47_12370	0.34	-1.8
2,613,137	+		IAI47_12370	0.37	-0.6
2,613,199	+		IAI47_12370	0.62	-1.4
2,613,200	-		IAI47_12370	0.62	+0.4
2,613,200	-		IAI47_12370	0.62	+1.0
2,613,200	-		IAI47_12370	0.62	+0.1
2,613,274	+				+1.6
2,613,275	-				+1.5
2,613,275	-				+3.4
2,613,296	+				-1.3
2,613,296	+				+0.4
2,613,296	+				-1.0
2,613,296	+				+0.8
2,613,296	+				-2.1
2,613,296	+				+1.0
2,613,297	-				+0.6
2,613,297	-				+0.8
2,613,297	-				-0.8
2,613,297	-				-1.0
2,613,297	-				-0.7
2,613,297	-				-1.3
2,613,297	-				-2.1
2,613,297	-				+2.4
2,613,297	-				-1.2
2,613,495	+		IAI47_12375	0.71	-0.2
2,613,496	-		IAI47_12375	0.71	+0.5
2,613,496	-		IAI47_12375	0.71	-0.3
2,613,555	+				-1.4
2,613,555	+				+0.5
2,613,555	+				-1.6
2,613,556	-				+1.9
2,613,556	-				+1.1
2,613,556	-				+0.3
2,613,559	+				+0.1
2,613,559	+				-0.6
2,613,560	-				+0.5
2,613,560	-				+2.1
2,613,585	+				+0.1
2,613,585	+				+0.3
2,613,586	-				-0.5
2,613,614	+				-0.1
2,613,615	-				-0.4
2,613,698	+		IAI47_12380	0.14	+1.4
2,613,709	+		IAI47_12380	0.16	+1.0
2,613,709	+		IAI47_12380	0.16	+0.4
2,613,721	+		IAI47_12380	0.17	+0.4
2,613,738	+		IAI47_12380	0.19	+2.1
2,613,755	-		IAI47_12380	0.21	+0.4
2,613,755	-		IAI47_12380	0.21	+1.0
2,613,763	+		IAI47_12380	0.22	+0.4
2,613,763	+		IAI47_12380	0.22	+0.3
2,613,763	+		IAI47_12380	0.22	+2.6
2,613,763	+		IAI47_12380	0.22	-0.2
2,613,763	+		IAI47_12380	0.22	+0.8
2,613,763	+		IAI47_12380	0.22	-0.7
2,613,763	+		IAI47_12380	0.22	+0.3
2,613,764	-		IAI47_12380	0.22	+1.0
2,613,764	-		IAI47_12380	0.22	+1.7
2,613,764	-		IAI47_12380	0.22	+0.7
2,613,764	-		IAI47_12380	0.22	+0.2
2,613,764	-		IAI47_12380	0.22	+0.5
2,613,764	-		IAI47_12380	0.22	-1.0
2,613,764	-		IAI47_12380	0.22	+0.3
2,613,764	-		IAI47_12380	0.22	+0.7
2,613,764	-		IAI47_12380	0.22	-0.4
2,613,764	-		IAI47_12380	0.22	-0.7
2,613,764	-		IAI47_12380	0.22	+2.2
2,613,764	-		IAI47_12380	0.22	+0.7
2,613,820	+		IAI47_12380	0.29	+0.8
2,613,892	+		IAI47_12380	0.38	-1.4
2,613,892	+		IAI47_12380	0.38	+5.1
2,613,893	-		IAI47_12380	0.39	-0.1
2,613,986	+		IAI47_12380	0.50	+1.4
2,613,986	+		IAI47_12380	0.50	-0.6
2,613,986	+		IAI47_12380	0.50	+0.6
2,613,986	+		IAI47_12380	0.50	+0.4
2,613,986	+		IAI47_12380	0.50	+1.1
2,613,986	+		IAI47_12380	0.50	+1.7
2,613,987	-		IAI47_12380	0.50	+2.9
2,613,987	-		IAI47_12380	0.50	+0.8
2,613,987	-		IAI47_12380	0.50	+2.7
2,613,987	-		IAI47_12380	0.50	-0.4
2,613,987	-		IAI47_12380	0.50	-0.4
2,613,987	-		IAI47_12380	0.50	-0.1
2,613,987	-		IAI47_12380	0.50	-0.2
2,613,987	-		IAI47_12380	0.50	+0.6
2,613,987	-		IAI47_12380	0.50	-0.1
2,613,989	-		IAI47_12380	0.51	+0.8
2,613,989	-		IAI47_12380	0.51	-0.9
2,614,017	-		IAI47_12380	0.54	-0.4
2,614,041	-		IAI47_12380	0.57	+0.0
2,614,060	-		IAI47_12380	0.59	-2.0
2,614,060	-		IAI47_12380	0.59	+0.1
2,614,081	+		IAI47_12380	0.62	+0.5
2,614,138	-		IAI47_12380	0.69	+1.0
2,614,144	-		IAI47_12380	0.70	-0.5
2,614,144	-		IAI47_12380	0.70	-0.4
2,614,187	-		IAI47_12380	0.75	+1.4
2,614,187	-		IAI47_12380	0.75	+0.1
2,614,187	-		IAI47_12380	0.75	-0.1
2,614,247	+		IAI47_12380	0.83	-0.4
2,614,247	+		IAI47_12380	0.83	+0.6
2,614,247	+		IAI47_12380	0.83	-0.4
2,614,248	-		IAI47_12380	0.83	-1.8
2,614,248	-		IAI47_12380	0.83	-1.8
2,614,335	+				-1.3
2,614,335	+				+2.1
2,614,336	-				+0.0
2,614,336	-				+1.0
2,614,336	-				+1.2
2,614,339	+				-0.0
2,614,339	+				+0.3
2,614,340	-				+1.0
2,614,340	-				+0.6
2,614,340	-				-0.4
2,614,340	-				-1.9
2,614,340	-				+0.8
2,614,479	+		IAI47_12385	0.14	+0.8
2,614,511	+		IAI47_12385	0.18	+0.1
2,614,512	-		IAI47_12385	0.18	+0.4
2,614,525	+		IAI47_12385	0.20	-2.4
2,614,525	+		IAI47_12385	0.20	+0.9
2,614,525	+		IAI47_12385	0.20	-1.1
2,614,526	-		IAI47_12385	0.20	+0.8
2,614,526	-		IAI47_12385	0.20	+0.2
2,614,526	-		IAI47_12385	0.20	-1.4
2,614,565	-		IAI47_12385	0.26	+0.9
2,614,603	+		IAI47_12385	0.31	-1.4
2,614,603	+		IAI47_12385	0.31	+0.8
2,614,603	+		IAI47_12385	0.31	+2.4
2,614,603	+		IAI47_12385	0.31	-0.1
2,614,604	-		IAI47_12385	0.31	-1.8
2,614,604	-		IAI47_12385	0.31	+2.6
2,614,606	+		IAI47_12385	0.31	-1.0
2,614,606	+		IAI47_12385	0.31	+0.9
2,614,606	+		IAI47_12385	0.31	-0.5
2,614,607	-		IAI47_12385	0.31	-0.8
2,614,607	-		IAI47_12385	0.31	+0.7
2,614,607	-		IAI47_12385	0.31	-0.0
2,614,607	-		IAI47_12385	0.31	+0.6
2,614,607	-		IAI47_12385	0.31	+2.4
2,614,607	-		IAI47_12385	0.31	+0.1
2,614,607	-		IAI47_12385	0.31	-0.0
2,614,607	-		IAI47_12385	0.31	-0.3
2,614,688	+		IAI47_12385	0.42	-1.7
2,614,799	+		IAI47_12385	0.58	+1.6
2,614,799	+		IAI47_12385	0.58	-0.4
2,614,799	+		IAI47_12385	0.58	+1.1
2,614,800	-		IAI47_12385	0.58	+1.0
2,614,832	+		IAI47_12385	0.62	-0.4
2,614,832	+		IAI47_12385	0.62	-0.4
2,614,832	+		IAI47_12385	0.62	+2.0
2,614,833	-		IAI47_12385	0.62	+0.3
2,614,833	-		IAI47_12385	0.62	+0.6
2,614,833	-		IAI47_12385	0.62	-1.2
2,614,833	-		IAI47_12385	0.62	-0.1
2,614,833	-		IAI47_12385	0.62	+1.4
2,614,838	+		IAI47_12385	0.63	-0.1
2,614,839	-		IAI47_12385	0.63	-0.0
2,614,847	+		IAI47_12385	0.64	+4.0
2,614,847	+		IAI47_12385	0.64	+0.4
2,614,848	-		IAI47_12385	0.64	+0.4
2,614,848	-		IAI47_12385	0.64	+0.7
2,614,874	+		IAI47_12385	0.68	-0.8
2,614,926	+		IAI47_12385	0.75	+2.1
2,614,926	+		IAI47_12385	0.75	-2.1
2,614,974	+		IAI47_12385	0.82	-0.6
2,614,978	+		IAI47_12385	0.82	-0.4
2,614,978	+		IAI47_12385	0.82	+0.3
2,614,979	-		IAI47_12385	0.82	-1.4
2,614,979	-		IAI47_12385	0.82	+2.8
2,614,979	-		IAI47_12385	0.82	+0.9
2,614,979	-		IAI47_12385	0.82	+0.7
2,614,979	-		IAI47_12385	0.82	-0.6
2,614,979	-		IAI47_12385	0.82	+0.7
2,615,002	-		IAI47_12385	0.85	+0.9
2,615,058	+				-0.3
2,615,095	+				+0.9
2,615,128	+				-0.4
2,615,128	+				-2.5
2,615,128	+				-0.7
2,615,128	+				+1.6
2,615,128	+				+1.6
2,615,128	+				+0.2
2,615,128	+				+0.8
2,615,128	+				-0.2
2,615,128	+				-0.8
2,615,128	+				-2.1
2,615,128	+				-0.3
2,615,129	-				+1.8
2,615,129	-				-0.4
2,615,129	-				+3.8
2,615,129	-				+0.2
2,615,129	-				-0.9
2,615,129	-				-0.4
2,615,209	-				-1.2
2,615,225	+				+0.0
2,615,233	+				-1.4
2,615,233	+				+2.5
2,615,234	-				+1.3
2,615,234	-				-1.2
2,615,252	-				+2.4
2,615,292	+				+0.9
2,615,298	+				+0.5
2,615,298	+				-0.8
2,615,318	+				+0.6
2,615,318	+				-0.2
2,615,372	+				+2.2
2,615,373	-				-1.2