Strain Fitness in Pantoea sp. MT58 around IAI47_12310

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,600,721	+		IAI47_12295	0.61	-0.6
2,600,721	+		IAI47_12295	0.61	-2.5
2,600,721	+		IAI47_12295	0.61	+0.9
2,600,721	+		IAI47_12295	0.61	+2.7
2,600,722	-		IAI47_12295	0.61	+0.5
2,600,722	-		IAI47_12295	0.61	-0.2
2,600,751	-		IAI47_12295	0.63	-0.3
2,600,751	-		IAI47_12295	0.63	+0.2
2,600,776	-		IAI47_12295	0.65	+1.1
2,600,776	-		IAI47_12295	0.65	+0.4
2,600,791	+		IAI47_12295	0.67	+2.0
2,600,791	+		IAI47_12295	0.67	-0.4
2,600,791	+		IAI47_12295	0.67	-0.2
2,600,791	+		IAI47_12295	0.67	+2.7
2,600,791	+		IAI47_12295	0.67	-1.4
2,600,791	+		IAI47_12295	0.67	-0.8
2,600,791	+		IAI47_12295	0.67	+0.9
2,600,792	-		IAI47_12295	0.67	+0.5
2,600,792	-		IAI47_12295	0.67	+0.8
2,600,792	-		IAI47_12295	0.67	+0.4
2,600,792	-		IAI47_12295	0.67	+0.8
2,600,792	-		IAI47_12295	0.67	+0.2
2,600,894	-		IAI47_12295	0.75	+0.4
2,600,894	-		IAI47_12295	0.75	+1.8
2,600,910	-		IAI47_12295	0.77	+0.3
2,601,087	-				-1.1
2,601,096	+				-0.4
2,601,175	+				+0.6
2,601,274	-		IAI47_12300	0.55	+0.4
2,601,274	-		IAI47_12300	0.55	-2.2
2,601,274	-		IAI47_12300	0.55	+0.9
2,601,274	-		IAI47_12300	0.55	+2.3
2,601,274	-		IAI47_12300	0.55	+1.9
2,601,319	-		IAI47_12300	0.81	+0.8
2,601,328	+		IAI47_12300	0.86	+2.1
2,601,329	-		IAI47_12300	0.87	+1.6
2,601,329	-		IAI47_12300	0.87	-0.6
2,601,363	+				+0.9
2,601,364	-				+1.5
2,601,364	-				+1.0
2,601,364	-				+1.0
2,601,408	+		IAI47_12305	0.12	-1.0
2,601,408	+		IAI47_12305	0.12	+1.1
2,601,408	+		IAI47_12305	0.12	-1.5
2,601,408	+		IAI47_12305	0.12	+0.8
2,601,409	-		IAI47_12305	0.12	-0.1
2,601,409	-		IAI47_12305	0.12	-2.0
2,601,409	-		IAI47_12305	0.12	+0.5
2,601,409	-		IAI47_12305	0.12	+1.6
2,601,412	+		IAI47_12305	0.15	+1.4
2,601,412	+		IAI47_12305	0.15	-0.7
2,601,412	+		IAI47_12305	0.15	+0.1
2,601,412	+		IAI47_12305	0.15	-1.7
2,601,412	+		IAI47_12305	0.15	+0.1
2,601,412	+		IAI47_12305	0.15	+0.6
2,601,413	-		IAI47_12305	0.15	+0.6
2,601,413	-		IAI47_12305	0.15	+0.8
2,601,413	-		IAI47_12305	0.15	+0.7
2,601,413	-		IAI47_12305	0.15	+0.4
2,601,427	+		IAI47_12305	0.25	-0.4
2,601,427	+		IAI47_12305	0.25	+1.0
2,601,428	-		IAI47_12305	0.26	-0.2
2,601,428	-		IAI47_12305	0.26	-0.1
2,601,428	-		IAI47_12305	0.26	-0.2
2,601,429	+		IAI47_12305	0.26	+0.8
2,601,429	+		IAI47_12305	0.26	+0.0
2,601,429	+		IAI47_12305	0.26	+0.5
2,601,429	+		IAI47_12305	0.26	+0.0
2,601,429	+		IAI47_12305	0.26	+0.3
2,601,430	-		IAI47_12305	0.27	+1.5
2,601,430	-		IAI47_12305	0.27	+0.2
2,601,534	+				+0.7
2,601,534	+				-1.7
2,601,534	+				-0.1
2,601,534	+				+1.6
2,601,534	+				+0.7
2,601,534	+				+0.9
2,601,534	+				-0.7
2,601,534	+				+0.8
2,601,534	+				-0.1
2,601,534	+				+0.4
2,601,535	-				+1.5
2,601,535	-				+0.5
2,601,535	-				+0.5
2,601,535	-				+0.2
2,601,535	-				+1.1
2,601,535	-				+0.2
2,601,535	-				-0.7
2,601,535	-				-0.2
2,601,535	-				+0.7
2,601,535	-				+1.4
2,601,535	-				-1.0
2,601,535	-				-0.3
2,601,538	+				-0.5
2,601,538	+				+0.4
2,601,538	+				+0.1
2,601,538	+				-0.5
2,601,538	+				-0.8
2,601,538	+				-0.5
2,601,539	-				+0.5
2,601,539	-				-0.2
2,601,539	-				+0.3
2,601,539	-				-0.2
2,601,539	-				-0.9
2,601,539	-				-1.0
2,601,539	-				-2.2
2,601,539	-				-0.6
2,601,539	-				+1.5
2,601,539	-				+0.7
2,601,539	-				+0.2
2,601,539	-				+0.4
2,601,553	-				+0.4
2,601,553	-				+1.4
2,601,567	+				-0.4
2,601,567	+				+0.2
2,601,587	+				+0.1
2,601,587	+				+0.5
2,601,588	-				+0.0
2,601,588	-				-0.5
2,601,588	-				+0.7
2,601,604	-				+0.3
2,601,648	+				+0.6
2,601,648	+				-1.0
2,601,704	+				-0.0
2,601,704	+				+0.4
2,601,704	+				+0.8
2,601,705	-				-0.8
2,601,705	-				+0.6
2,601,737	+				-0.5
2,601,737	+				-0.0
2,601,738	-				+1.0
2,601,738	-				+0.0
2,601,738	-				-0.3
2,601,739	+				+1.4
2,601,739	+				+0.7
2,601,739	+				-2.9
2,601,739	+				+2.4
2,601,739	+				+1.2
2,601,739	+				+1.9
2,601,740	-				-1.8
2,601,775	+				+2.5
2,601,776	-				+1.1
2,601,815	+		IAI47_12310	0.12	-0.7
2,601,894	-		IAI47_12310	0.18	+1.4
2,601,972	-		IAI47_12310	0.25	+0.7
2,601,972	-		IAI47_12310	0.25	+1.1
2,602,028	+		IAI47_12310	0.29	-0.8
2,602,028	+		IAI47_12310	0.29	-0.6
2,602,029	-		IAI47_12310	0.29	+1.2
2,602,031	+		IAI47_12310	0.30	-0.0
2,602,094	+		IAI47_12310	0.35	+0.4
2,602,095	-		IAI47_12310	0.35	+0.3
2,602,095	-		IAI47_12310	0.35	+2.0
2,602,138	+		IAI47_12310	0.38	+0.4
2,602,138	+		IAI47_12310	0.38	-0.0
2,602,139	-		IAI47_12310	0.38	+0.8
2,602,206	+		IAI47_12310	0.44	+2.5
2,602,207	-				+1.1
2,602,207	-		IAI47_12310	0.44	-0.5
2,602,381	+		IAI47_12310	0.58	+1.2
2,602,381	+		IAI47_12310	0.58	+0.7
2,602,382	-		IAI47_12310	0.58	-0.4
2,602,382	-		IAI47_12310	0.58	+0.4
2,602,406	+		IAI47_12310	0.60	+1.4
2,602,406	+		IAI47_12310	0.60	-0.6
2,602,407	-		IAI47_12310	0.60	-0.5
2,602,407	-		IAI47_12310	0.60	+0.4
2,602,407	-		IAI47_12310	0.60	+0.2
2,602,407	-		IAI47_12310	0.60	-0.7
2,602,407	-		IAI47_12310	0.60	+2.4
2,602,475	+		IAI47_12310	0.65	+0.5
2,602,476	-		IAI47_12310	0.66	+0.5
2,602,476	-		IAI47_12310	0.66	+0.0
2,602,495	+		IAI47_12310	0.67	-0.2
2,602,495	+		IAI47_12310	0.67	-0.8
2,602,495	+		IAI47_12310	0.67	+1.2
2,602,495	+		IAI47_12310	0.67	+1.8
2,602,495	+		IAI47_12310	0.67	+1.8
2,602,495	+		IAI47_12310	0.67	+1.2
2,602,495	+		IAI47_12310	0.67	+0.6
2,602,496	-		IAI47_12310	0.67	-1.5
2,602,511	+		IAI47_12310	0.68	+1.0
2,602,511	+		IAI47_12310	0.68	+0.6
2,602,511	+		IAI47_12310	0.68	-0.3
2,602,511	+		IAI47_12310	0.68	-0.0
2,602,512	-		IAI47_12310	0.68	+0.0
2,602,512	-		IAI47_12310	0.68	+3.7
2,602,512	-		IAI47_12310	0.68	+3.4
2,602,512	-		IAI47_12310	0.68	-1.2
2,602,575	-		IAI47_12310	0.74	-1.0
2,602,586	-		IAI47_12310	0.74	-0.6
2,602,700	+		IAI47_12310	0.84	-0.5
2,602,712	+		IAI47_12310	0.85	+0.1
2,602,712	+		IAI47_12310	0.85	+1.0
2,602,713	-		IAI47_12310	0.85	+2.7
2,602,714	+		IAI47_12310	0.85	+0.4
2,602,715	-		IAI47_12310	0.85	+2.3
2,602,715	-		IAI47_12310	0.85	-0.5
2,602,715	-		IAI47_12310	0.85	-0.5
2,602,715	-		IAI47_12310	0.85	+0.5
2,602,715	-		IAI47_12310	0.85	+0.8
2,602,715	-		IAI47_12310	0.85	-0.4
2,602,761	-		IAI47_12310	0.89	-1.5
2,602,774	+		IAI47_12310	0.90	-0.6
2,602,774	+		IAI47_12310	0.90	-0.4
2,602,774	+		IAI47_12310	0.90	-0.0
2,602,774	+		IAI47_12310	0.90	-1.2
2,602,774	+		IAI47_12310	0.90	-0.3
2,602,775	-		IAI47_12310	0.90	+0.5
2,602,775	-		IAI47_12310	0.90	+1.4
2,602,775	-		IAI47_12310	0.90	+2.7
2,602,775	-		IAI47_12310	0.90	-0.1
2,602,793	+				+1.3
2,602,793	+				+0.4
2,602,864	-				+0.8
2,602,874	+				-1.7
2,602,915	+				-2.2
2,602,915	+				+1.4
2,602,915	+				+1.8
2,602,916	-				+0.9
2,602,916	-				+0.8
2,602,916	-				-0.3
2,602,937	+				-1.2
2,602,938	-				-0.4
2,602,938	-				-1.1
2,602,941	+				-2.7
2,602,941	+				+0.3
2,602,941	+				+1.0
2,602,942	-				-0.5
2,602,966	-				-1.0
2,602,966	-				+0.8
2,602,966	-				+1.4
2,602,966	-				+0.3
2,603,150	-		IAI47_12315	0.34	+1.4
2,603,172	+		IAI47_12315	0.37	-0.0
2,603,172	+		IAI47_12315	0.37	+0.2
2,603,172	+		IAI47_12315	0.37	+0.2
2,603,173	-		IAI47_12315	0.38	+0.7
2,603,173	-		IAI47_12315	0.38	-1.9
2,603,173	-		IAI47_12315	0.38	-1.2
2,603,173	-		IAI47_12315	0.38	+0.7
2,603,173	-		IAI47_12315	0.38	-0.8
2,603,224	+		IAI47_12315	0.45	-1.0
2,603,224	+		IAI47_12315	0.45	-1.8
2,603,224	+		IAI47_12315	0.45	-0.3
2,603,224	+		IAI47_12315	0.45	+0.1
2,603,224	+		IAI47_12315	0.45	-1.4
2,603,224	+		IAI47_12315	0.45	+0.3
2,603,224	+		IAI47_12315	0.45	-2.4
2,603,224	+		IAI47_12315	0.45	-1.5
2,603,225	-		IAI47_12315	0.45	-1.2
2,603,225	-		IAI47_12315	0.45	-1.0
2,603,225	-		IAI47_12315	0.45	-0.5
2,603,225	-		IAI47_12315	0.45	-2.1
2,603,283	+		IAI47_12315	0.53	-1.3
2,603,283	+		IAI47_12315	0.53	-0.3
2,603,363	-		IAI47_12315	0.64	+0.4
2,603,385	+		IAI47_12315	0.67	+2.9
2,603,385	+		IAI47_12315	0.67	+0.6
2,603,385	+		IAI47_12315	0.67	+1.5
2,603,386	-		IAI47_12315	0.67	-0.2
2,603,386	-		IAI47_12315	0.67	-1.0
2,603,386	-		IAI47_12315	0.67	-1.0
2,603,386	-		IAI47_12315	0.67	+1.4
2,603,388	+		IAI47_12315	0.67	+0.9
2,603,388	+		IAI47_12315	0.67	-0.9
2,603,388	+		IAI47_12315	0.67	+0.3
2,603,389	-		IAI47_12315	0.67	-0.6
2,603,389	-		IAI47_12315	0.67	-0.3
2,603,405	+		IAI47_12315	0.69	-0.1
2,603,405	+		IAI47_12315	0.69	+1.9
2,603,405	+		IAI47_12315	0.69	+0.9
2,603,405	+		IAI47_12315	0.69	-0.9
2,603,407	+		IAI47_12315	0.70	+0.2
2,603,408	-		IAI47_12315	0.70	-1.6
2,603,551	-		IAI47_12315	0.89	+0.4
2,603,596	+				+0.5
2,603,596	+				-0.2
2,603,613	-				-0.4
2,603,613	-				-0.5
2,603,615	+				-0.1
2,603,615	+				-1.9
2,603,616	-				+0.5
2,603,650	+				-0.9
2,603,651	-				+0.8
2,603,660	-				-0.5
2,603,727	+		IAI47_12320	0.21	-0.2
2,603,727	+		IAI47_12320	0.21	-2.2
2,603,727	+		IAI47_12320	0.21	-1.0
2,603,727	+		IAI47_12320	0.21	+1.6
2,603,728	-		IAI47_12320	0.21	+2.3
2,603,748	+		IAI47_12320	0.26	-0.9
2,603,749	-		IAI47_12320	0.26	-1.5
2,603,807	+		IAI47_12320	0.38	-0.7