Strain Fitness in Pantoea sp. MT58 around IAI47_09905

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,095,750	+		IAI47_09890	0.87	+2.8
2,095,751	-		IAI47_09890	0.87	+0.9
2,095,840	-				+0.7
2,095,875	+				-1.7
2,095,876	-				-0.0
2,095,921	+				+0.5
2,095,921	+				-0.5
2,095,921	+				+1.1
2,095,922	-				-1.0
2,095,922	-				+0.1
2,095,935	-		IAI47_09895	0.12	-0.9
2,095,935	-		IAI47_09895	0.12	-0.5
2,096,048	+		IAI47_09895	0.37	-1.0
2,096,195	+		IAI47_09895	0.71	-2.8
2,096,195	+		IAI47_09895	0.71	+0.1
2,096,196	-		IAI47_09895	0.71	-0.8
2,096,200	+		IAI47_09895	0.72	-0.2
2,096,235	-		IAI47_09895	0.80	+0.9
2,096,248	+		IAI47_09895	0.83	+0.4
2,096,248	+		IAI47_09895	0.83	-1.3
2,096,248	+		IAI47_09895	0.83	-1.8
2,096,249	-		IAI47_09895	0.83	+1.0
2,096,249	-		IAI47_09895	0.83	+0.3
2,096,249	-		IAI47_09895	0.83	-1.6
2,096,249	-		IAI47_09895	0.83	-0.9
2,096,256	+		IAI47_09895	0.85	-0.3
2,096,285	+				+0.3
2,096,285	+				-1.3
2,096,309	+				-0.9
2,096,309	+				-0.1
2,096,309	+				-0.4
2,096,309	+				-0.5
2,096,309	+				-1.7
2,096,310	-				-0.9
2,096,310	-				+2.0
2,096,310	-				+1.3
2,096,335	+				-0.8
2,096,335	+				-0.2
2,096,336	-				+1.3
2,096,393	+				-0.9
2,096,393	+				-0.1
2,096,448	+				-0.3
2,096,462	+				-1.1
2,096,484	+				-0.8
2,096,484	+				-1.1
2,096,502	+				+0.4
2,096,502	+				+0.6
2,096,502	+				+0.2
2,096,502	+				-2.0
2,096,502	+				+0.6
2,096,502	+				+1.5
2,096,502	+				+0.5
2,096,503	-				+5.5
2,096,503	-				-0.1
2,096,503	-				-0.1
2,096,504	+				-1.2
2,096,504	+				-0.1
2,096,504	+				+0.5
2,096,504	+				+0.2
2,096,504	+				-1.1
2,096,504	+				+2.3
2,096,504	+				-1.2
2,096,504	+				+0.1
2,096,504	+				-0.8
2,096,504	+				-1.2
2,096,504	+				-1.5
2,096,505	-				-1.7
2,096,505	-				+0.2
2,096,505	-				-1.3
2,096,505	-				-0.2
2,096,505	-				-1.2
2,096,505	-				-0.2
2,096,505	-				+0.1
2,096,505	-				+0.8
2,096,505	-				+0.1
2,096,514	+				+1.4
2,096,515	-				+1.3
2,096,515	-				-0.7
2,096,602	+		IAI47_09900	0.42	-0.1
2,096,656	+		IAI47_09900	0.63	+1.5
2,096,657	-		IAI47_09900	0.64	-0.3
2,096,657	-		IAI47_09900	0.64	+0.2
2,096,665	-		IAI47_09900	0.67	-0.7
2,096,665	-		IAI47_09900	0.67	-0.2
2,096,744	+				-1.1
2,096,745	-				+1.0
2,096,745	-				+0.5
2,096,745	-				-3.2
2,096,745	-				+0.4
2,096,789	+				-1.0
2,096,827	+				-0.1
2,096,827	+				+0.5
2,096,827	+				-0.9
2,096,827	+				-0.4
2,096,827	+				+0.2
2,096,828	-				+0.8
2,096,828	-				+0.1
2,096,828	-				-0.5
2,096,919	+		IAI47_09905	0.13	+0.5
2,096,919	+		IAI47_09905	0.13	+0.5
2,096,920	-		IAI47_09905	0.13	-2.0
2,097,011	+		IAI47_09905	0.20	-0.7
2,097,012	-		IAI47_09905	0.20	-2.2
2,097,012	-		IAI47_09905	0.20	+0.4
2,097,094	+		IAI47_09905	0.27	+1.7
2,097,095	-		IAI47_09905	0.27	+1.4
2,097,095	-		IAI47_09905	0.27	-0.9
2,097,128	+		IAI47_09905	0.29	+0.1
2,097,142	+		IAI47_09905	0.30	-2.8
2,097,142	+		IAI47_09905	0.30	+1.2
2,097,142	+		IAI47_09905	0.30	+3.2
2,097,143	-		IAI47_09905	0.30	-0.2
2,097,143	-		IAI47_09905	0.30	+4.5
2,097,143	-		IAI47_09905	0.30	+1.0
2,097,147	+		IAI47_09905	0.31	-1.8
2,097,148	-		IAI47_09905	0.31	-1.0
2,097,148	-		IAI47_09905	0.31	+1.4
2,097,282	+		IAI47_09905	0.41	+1.0
2,097,282	+		IAI47_09905	0.41	+0.1
2,097,282	+		IAI47_09905	0.41	-0.5
2,097,282	+		IAI47_09905	0.41	-1.5
2,097,283	-		IAI47_09905	0.41	+1.4
2,097,283	-		IAI47_09905	0.41	+0.3
2,097,303	+		IAI47_09905	0.42	-0.2
2,097,304	-		IAI47_09905	0.43	+1.1
2,097,304	-		IAI47_09905	0.43	+1.0
2,097,328	-		IAI47_09905	0.44	+0.1
2,097,342	-		IAI47_09905	0.45	-0.6
2,097,352	+		IAI47_09905	0.46	+2.1
2,097,352	+		IAI47_09905	0.46	+0.9
2,097,352	+		IAI47_09905	0.46	+0.5
2,097,353	-		IAI47_09905	0.46	-0.1
2,097,353	-		IAI47_09905	0.46	+0.8
2,097,353	-		IAI47_09905	0.46	+1.2
2,097,353	-		IAI47_09905	0.46	+1.6
2,097,542	-		IAI47_09905	0.61	-1.1
2,097,542	-		IAI47_09905	0.61	+0.1
2,097,584	+		IAI47_09905	0.64	+0.4
2,097,584	+		IAI47_09905	0.64	-1.6
2,097,585	-		IAI47_09905	0.64	-1.1
2,097,585	-		IAI47_09905	0.64	-0.7
2,097,627	+		IAI47_09905	0.67	+0.8
2,097,627	+		IAI47_09905	0.67	+0.5
2,097,627	+		IAI47_09905	0.67	+0.4
2,097,628	-		IAI47_09905	0.67	+1.8
2,097,628	-		IAI47_09905	0.67	-1.6
2,097,641	+		IAI47_09905	0.68	-0.7
2,097,697	-		IAI47_09905	0.73	+0.5
2,097,733	+		IAI47_09905	0.75	-1.9
2,097,733	+		IAI47_09905	0.75	+0.3
2,097,733	+		IAI47_09905	0.75	-0.4
2,097,734	-		IAI47_09905	0.75	+0.9
2,097,734	-		IAI47_09905	0.75	-1.4
2,097,930	+				-0.2
2,097,930	+				+0.1
2,097,931	-				-0.9
2,097,931	-				-1.2
2,097,993	+				+0.2
2,098,026	+				+0.5
2,098,027	-				+1.0
2,098,027	-				-1.1
2,098,027	-				+2.1
2,098,027	-				+0.4
2,098,074	+				+2.4
2,098,074	+				+0.4
2,098,075	-				-0.9
2,098,075	-				-0.4
2,098,075	-				+0.0
2,098,075	-				+1.6
2,098,075	-				+3.6
2,098,075	-				-0.7
2,098,075	-				-0.4
2,098,121	+				+0.3
2,098,121	+				-1.5
2,098,121	+				+1.0
2,098,121	+				+0.3
2,098,121	+				-0.9
2,098,121	+				+0.5
2,098,121	+				+0.5
2,098,121	+				-1.2
2,098,121	+				+1.3
2,098,121	+				-0.9
2,098,121	+				-1.9
2,098,121	+				-0.5
2,098,122	-				-0.3
2,098,122	-				+1.0
2,098,122	-				+3.0
2,098,122	-				+1.5
2,098,127	+				+1.2
2,098,127	+				-0.1
2,098,127	+				+0.2
2,098,127	+				-0.4
2,098,127	+				+0.1
2,098,128	-				-0.1
2,098,128	-				+0.9
2,098,128	-				+0.9
2,098,128	-				+0.4
2,098,128	-				+0.1
2,098,140	+				-0.9
2,098,140	+				-1.7
2,098,151	+				-0.5
2,098,151	+				-0.3
2,098,151	+				+0.0
2,098,151	+				-0.8
2,098,152	-				+0.2
2,098,152	-				+0.5
2,098,152	-				+0.5
2,098,152	-				+1.6
2,098,157	+				+1.0
2,098,157	+				+0.9
2,098,157	+				+0.0
2,098,158	-				+2.0
2,098,159	-				+1.5
2,098,314	+		IAI47_09910	0.75	-0.2
2,098,362	+				-0.9
2,098,362	+				-1.2
2,098,362	+				-0.7
2,098,363	-				+1.1
2,098,363	-				-1.2
2,098,365	+				+0.5
2,098,366	-				-0.7
2,098,380	+				-0.7
2,098,380	+				+0.2
2,098,396	+				+1.6
2,098,397	-				-1.3
2,098,404	+				-0.9
2,098,404	+				-0.9
2,098,404	+				+0.6
2,098,404	+				+0.9
2,098,404	+				-2.1
2,098,404	+				-0.3
2,098,405	-				-0.8
2,098,405	-				+0.9
2,098,405	-				-1.6
2,098,405	-				-0.4
2,098,405	-				-0.7
2,098,408	+				-0.1
2,098,408	+				+1.0
2,098,408	+				+0.4
2,098,408	+				-0.5
2,098,409	-				-0.2
2,098,409	-				+0.5
2,098,409	-				-0.2
2,098,409	-				-0.1
2,098,409	-				+1.7
2,098,431	+				-0.1
2,098,432	-				-0.9
2,098,503	+				-1.7
2,098,534	+				-0.2
2,098,534	+				+1.5
2,098,535	-				-0.6
2,098,536	+				-0.9
2,098,536	+				+2.1
2,098,536	+				+0.9
2,098,536	+				-1.5
2,098,536	+				+0.2
2,098,536	+				+0.9
2,098,536	-				+1.3
2,098,537	-				-0.5
2,098,572	+				-1.7
2,098,572	+				-1.3
2,098,572	+				+1.7
2,098,572	+				-1.5
2,098,572	-				-0.8
2,098,573	-				-1.1
2,098,573	-				-0.1
2,098,596	-				-0.1
2,098,596	-				-0.2
2,098,596	-				-0.6
2,098,596	-				-0.7
2,098,609	+				-0.3
2,098,610	-				-0.4
2,098,610	-				+0.5
2,098,615	+				-0.5
2,098,616	-				-0.9
2,098,665	+				-0.1
2,098,773	+				+0.2
2,098,773	+				+0.2
2,098,777	-				+2.7
2,098,815	+		IAI47_09915	0.11	+0.4
2,098,815	+		IAI47_09915	0.11	-2.5
2,098,816	-		IAI47_09915	0.11	+1.6
2,098,816	-		IAI47_09915	0.11	+0.4
2,098,816	-		IAI47_09915	0.11	-0.9
2,098,816	-		IAI47_09915	0.11	-0.5
2,098,816	-		IAI47_09915	0.11	+3.1
2,098,819	+		IAI47_09915	0.11	-1.5
2,098,819	+		IAI47_09915	0.11	-0.3
2,098,820	-		IAI47_09915	0.11	+1.4
2,098,820	-		IAI47_09915	0.11	-0.1
2,098,820	-		IAI47_09915	0.11	+1.2
2,098,820	-		IAI47_09915	0.11	+3.3
2,098,820	-		IAI47_09915	0.11	+0.9
2,098,921	+		IAI47_09915	0.18	+1.1
2,098,921	+		IAI47_09915	0.18	+0.6
2,098,921	+		IAI47_09915	0.18	-1.7
2,098,921	+		IAI47_09915	0.18	+0.2
2,098,921	+		IAI47_09915	0.18	+3.6
2,098,921	+		IAI47_09915	0.18	+0.1
2,098,921	+		IAI47_09915	0.18	-0.7
2,098,921	+		IAI47_09915	0.18	+1.5
2,098,921	+		IAI47_09915	0.18	+1.4
2,098,922	-		IAI47_09915	0.19	-0.8
2,098,922	-		IAI47_09915	0.19	+0.7
2,098,922	-		IAI47_09915	0.19	+0.0
2,098,922	-		IAI47_09915	0.19	-0.2
2,098,922	-		IAI47_09915	0.19	-0.7
2,098,922	-		IAI47_09915	0.19	+0.2
2,098,922	-		IAI47_09915	0.19	+1.0
2,098,922	-		IAI47_09915	0.19	+0.3
2,098,922	-		IAI47_09915	0.19	-0.3
2,098,923	+		IAI47_09915	0.19	+0.3
2,098,923	+		IAI47_09915	0.19	+0.9
2,098,923	+		IAI47_09915	0.19	-1.1
2,098,924	-		IAI47_09915	0.19	+0.1
2,098,924	-		IAI47_09915	0.19	+0.8
2,098,924	-		IAI47_09915	0.19	-0.8
2,098,924	-		IAI47_09915	0.19	-1.3
2,098,924	-		IAI47_09915	0.19	+2.5
2,098,924	-		IAI47_09915	0.19	+0.1
2,098,924	-		IAI47_09915	0.19	+0.1
2,098,944	-		IAI47_09915	0.20	-1.3
2,098,944	-		IAI47_09915	0.20	-0.7
2,099,007	+		IAI47_09915	0.25	+0.6
2,099,008	-		IAI47_09915	0.25	+2.1
2,099,049	-		IAI47_09915	0.28	+1.4
2,099,049	-		IAI47_09915	0.28	-1.2