Strain Fitness in Pantoea sp. MT58 around IAI47_09085

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,919,249	+				-0.5
1,919,250	-				+0.2
1,919,250	-				+0.2
1,919,303	+				-0.2
1,919,303	+				+0.4
1,919,303	+				-2.4
1,919,303	+				+0.1
1,919,303	+				+2.8
1,919,303	+				-1.1
1,919,304	-				-0.2
1,919,304	-				-0.6
1,919,304	-				-0.3
1,919,304	-				+1.4
1,919,304	-				+0.6
1,919,304	-				-2.3
1,919,304	-				-1.2
1,919,304	-				+0.4
1,919,354	+				+0.4
1,919,354	+				-0.1
1,919,354	+				+1.9
1,919,354	+				+0.2
1,919,355	-				+0.4
1,919,395	-		IAI47_09080	0.11	-1.8
1,919,415	-		IAI47_09080	0.13	+2.2
1,919,415	-		IAI47_09080	0.13	+1.4
1,919,435	+		IAI47_09080	0.15	+2.6
1,919,435	+		IAI47_09080	0.15	-1.3
1,919,435	+		IAI47_09080	0.15	+0.7
1,919,436	-		IAI47_09080	0.15	+0.5
1,919,436	-		IAI47_09080	0.15	+1.7
1,919,436	-		IAI47_09080	0.15	+0.3
1,919,436	-		IAI47_09080	0.15	+1.5
1,919,436	-		IAI47_09080	0.15	-0.2
1,919,439	-		IAI47_09080	0.16	-1.1
1,919,439	-		IAI47_09080	0.16	-0.8
1,919,439	-		IAI47_09080	0.16	+1.2
1,919,439	-		IAI47_09080	0.16	+1.6
1,919,439	-		IAI47_09080	0.16	+0.0
1,919,485	+		IAI47_09080	0.21	-2.0
1,919,573	+		IAI47_09080	0.30	-0.4
1,919,574	-		IAI47_09080	0.31	-0.8
1,919,574	-		IAI47_09080	0.31	-0.4
1,919,601	+		IAI47_09080	0.34	+2.9
1,919,601	+		IAI47_09080	0.34	-1.2
1,919,601	+		IAI47_09080	0.34	+0.5
1,919,602	-		IAI47_09080	0.34	-0.3
1,919,602	-		IAI47_09080	0.34	+2.5
1,919,602	-		IAI47_09080	0.34	-0.3
1,919,602	-		IAI47_09080	0.34	-0.6
1,919,602	-		IAI47_09080	0.34	-2.4
1,919,622	-		IAI47_09080	0.36	+0.6
1,919,660	-		IAI47_09080	0.40	-0.1
1,919,660	-		IAI47_09080	0.40	-0.4
1,919,660	-		IAI47_09080	0.40	-0.7
1,919,678	-		IAI47_09080	0.42	+0.2
1,919,712	+		IAI47_09080	0.46	+1.7
1,919,742	+		IAI47_09080	0.49	-1.3
1,919,742	+		IAI47_09080	0.49	-0.3
1,919,742	+		IAI47_09080	0.49	-1.0
1,919,742	+		IAI47_09080	0.49	+0.2
1,919,743	-		IAI47_09080	0.49	+1.9
1,919,743	-		IAI47_09080	0.49	-1.2
1,919,781	+		IAI47_09080	0.53	-0.4
1,919,782	-		IAI47_09080	0.53	+2.5
1,919,785	-		IAI47_09080	0.54	+1.6
1,919,785	-		IAI47_09080	0.54	+1.8
1,919,785	-		IAI47_09080	0.54	+1.7
1,919,838	+		IAI47_09080	0.60	-0.4
1,919,839	-		IAI47_09080	0.60	+0.2
1,919,907	-		IAI47_09080	0.67	+1.1
1,919,907	-		IAI47_09080	0.67	+0.1
1,919,927	+		IAI47_09080	0.69	-0.7
1,919,927	+		IAI47_09080	0.69	+1.0
1,919,928	-		IAI47_09080	0.70	-1.2
1,919,948	+		IAI47_09080	0.72	+2.8
1,919,948	+		IAI47_09080	0.72	-0.9
1,919,948	+		IAI47_09080	0.72	-0.6
1,919,949	-		IAI47_09080	0.72	+0.2
1,919,949	-		IAI47_09080	0.72	+1.5
1,919,968	+		IAI47_09080	0.74	+3.4
1,919,969	-		IAI47_09080	0.74	+0.7
1,920,051	+		IAI47_09080	0.83	-1.5
1,920,159	+				+1.9
1,920,159	+				+1.5
1,920,160	-				-0.6
1,920,221	+				-0.6
1,920,221	+				+0.2
1,920,221	+				-1.0
1,920,221	+				-0.3
1,920,222	-				+0.1
1,920,222	-				+1.3
1,920,222	-				-0.1
1,920,272	-				+0.1
1,920,272	-				-0.5
1,920,275	+				-0.5
1,920,275	+				+0.5
1,920,275	+				-0.6
1,920,275	+				+1.3
1,920,275	+				-0.2
1,920,276	-				-0.6
1,920,276	-				+0.3
1,920,276	-				+0.3
1,920,289	+				+0.9
1,920,324	-		IAI47_09085	0.11	-0.7
1,920,476	+		IAI47_09085	0.26	-0.9
1,920,477	-		IAI47_09085	0.26	+0.8
1,920,513	-		IAI47_09085	0.29	-1.0
1,920,513	-		IAI47_09085	0.29	-0.3
1,920,513	-		IAI47_09085	0.29	+2.2
1,920,573	+		IAI47_09085	0.35	-0.8
1,920,573	+		IAI47_09085	0.35	-1.3
1,920,573	+		IAI47_09085	0.35	-0.7
1,920,574	-		IAI47_09085	0.35	-0.6
1,920,574	-		IAI47_09085	0.35	+0.2
1,920,574	-		IAI47_09085	0.35	+0.6
1,920,575	+		IAI47_09085	0.35	+0.9
1,920,576	-		IAI47_09085	0.35	-0.9
1,920,576	-		IAI47_09085	0.35	-0.4
1,920,576	-		IAI47_09085	0.35	+1.6
1,920,576	-		IAI47_09085	0.35	+0.1
1,920,608	+		IAI47_09085	0.39	-0.5
1,920,608	+		IAI47_09085	0.39	+1.6
1,920,608	+		IAI47_09085	0.39	-0.5
1,920,608	+		IAI47_09085	0.39	+1.6
1,920,608	+		IAI47_09085	0.39	-0.6
1,920,608	+		IAI47_09085	0.39	+0.6
1,920,608	+		IAI47_09085	0.39	+1.0
1,920,609	-		IAI47_09085	0.39	+0.2
1,920,609	-		IAI47_09085	0.39	+0.8
1,920,609	-		IAI47_09085	0.39	-0.3
1,920,656	-		IAI47_09085	0.43	-1.6
1,920,709	-		IAI47_09085	0.48	+1.2
1,920,803	+		IAI47_09085	0.58	+0.6
1,920,837	-		IAI47_09085	0.61	+1.2
1,920,837	-		IAI47_09085	0.61	-0.2
1,920,837	-		IAI47_09085	0.61	-1.0
1,920,881	+		IAI47_09085	0.65	+2.2
1,920,881	+		IAI47_09085	0.65	+0.2
1,920,882	-		IAI47_09085	0.65	-1.6
1,920,942	+		IAI47_09085	0.71	+0.1
1,920,942	+		IAI47_09085	0.71	-0.5
1,920,942	+		IAI47_09085	0.71	+0.0
1,920,943	-		IAI47_09085	0.71	+1.0
1,920,943	-		IAI47_09085	0.71	+0.7
1,920,943	-		IAI47_09085	0.71	-0.2
1,920,943	-		IAI47_09085	0.71	+0.2
1,920,956	+		IAI47_09085	0.73	-1.4
1,920,956	+		IAI47_09085	0.73	+2.6
1,920,957	-		IAI47_09085	0.73	+0.6
1,920,963	+		IAI47_09085	0.73	-0.3
1,920,987	+		IAI47_09085	0.76	+0.7
1,920,987	+		IAI47_09085	0.76	-0.2
1,920,987	+		IAI47_09085	0.76	-1.3
1,920,988	-		IAI47_09085	0.76	+1.0
1,921,005	+		IAI47_09085	0.78	+0.6
1,921,005	+		IAI47_09085	0.78	-0.8
1,921,022	+		IAI47_09085	0.79	+0.2
1,921,148	+				-0.1
1,921,148	+				-0.2
1,921,208	+				-0.9
1,921,225	+				+0.5
1,921,225	+				+0.6
1,921,225	+				-0.2
1,921,225	+				+1.6
1,921,226	-				-0.4
1,921,226	-				-2.0
1,921,226	-				+0.4
1,921,226	-				+1.2
1,921,228	+				-1.7
1,921,228	+				+0.4
1,921,228	+				-0.1
1,921,228	+				-0.5
1,921,228	+				+2.3
1,921,228	+				-0.6
1,921,229	-				+1.5
1,921,229	-				-0.2
1,921,229	-				-1.6
1,921,229	-				+0.2
1,921,229	-				-1.0
1,921,229	-				-0.3
1,921,229	-				+1.3
1,921,229	-				-1.8
1,921,239	+				+0.4
1,921,240	-				+0.0
1,921,257	+				-0.2
1,921,258	-				+1.8
1,921,294	+				+1.2
1,921,294	+				+0.3
1,921,295	-				+1.7
1,921,295	-				-0.2
1,921,295	-				+0.1
1,921,295	-				+1.7
1,921,295	-				+0.6
1,921,367	+		IAI47_09090	0.14	+0.4
1,921,367	+		IAI47_09090	0.14	-0.2
1,921,367	+		IAI47_09090	0.14	-3.2
1,921,367	+		IAI47_09090	0.14	+0.2
1,921,367	+		IAI47_09090	0.14	-1.4
1,921,368	-		IAI47_09090	0.14	-0.4
1,921,368	-		IAI47_09090	0.14	-0.6
1,921,368	-		IAI47_09090	0.14	+1.6
1,921,368	-		IAI47_09090	0.14	+1.5
1,921,368	-		IAI47_09090	0.14	+1.4
1,921,368	-		IAI47_09090	0.14	+2.3
1,921,368	-		IAI47_09090	0.14	-0.5
1,921,448	-		IAI47_09090	0.22	-0.4
1,921,476	+		IAI47_09090	0.25	+2.2
1,921,477	-		IAI47_09090	0.25	-0.5
1,921,542	+		IAI47_09090	0.31	+0.7
1,921,543	-		IAI47_09090	0.31	-0.5
1,921,612	+		IAI47_09090	0.38	+3.2
1,921,612	+		IAI47_09090	0.38	-0.2
1,921,616	+		IAI47_09090	0.39	+4.8
1,921,616	+		IAI47_09090	0.39	-0.4
1,921,616	+		IAI47_09090	0.39	+0.8
1,921,616	+		IAI47_09090	0.39	-1.2
1,921,616	+		IAI47_09090	0.39	+0.3
1,921,616	+		IAI47_09090	0.39	+1.2
1,921,616	+		IAI47_09090	0.39	+2.9
1,921,616	+		IAI47_09090	0.39	-1.1
1,921,616	+		IAI47_09090	0.39	+0.4
1,921,616	+		IAI47_09090	0.39	+1.5
1,921,616	+		IAI47_09090	0.39	+1.8
1,921,617	-		IAI47_09090	0.39	+1.1
1,921,617	-		IAI47_09090	0.39	+1.0
1,921,617	-		IAI47_09090	0.39	+1.3
1,921,617	-		IAI47_09090	0.39	+1.1
1,921,617	-		IAI47_09090	0.39	-0.9
1,921,617	-		IAI47_09090	0.39	+1.7
1,921,663	+		IAI47_09090	0.43	+2.1
1,921,783	+		IAI47_09090	0.55	+0.2
1,921,783	+		IAI47_09090	0.55	+1.6
1,921,940	+		IAI47_09090	0.71	+0.9
1,921,940	+		IAI47_09090	0.71	+0.0
1,921,940	+		IAI47_09090	0.71	-0.2
1,921,940	+		IAI47_09090	0.71	+1.2
1,921,940	+		IAI47_09090	0.71	+1.6
1,921,940	+		IAI47_09090	0.71	+0.5
1,921,940	+		IAI47_09090	0.71	+3.2
1,921,940	+		IAI47_09090	0.71	-1.4
1,921,941	-		IAI47_09090	0.71	-2.0
1,921,941	-		IAI47_09090	0.71	-1.9
1,921,970	+		IAI47_09090	0.74	-0.5
1,921,970	+		IAI47_09090	0.74	+0.7
1,921,970	+		IAI47_09090	0.74	+1.1
1,921,970	+		IAI47_09090	0.74	-0.3
1,921,971	-		IAI47_09090	0.74	-1.6
1,921,971	-		IAI47_09090	0.74	+0.2
1,921,971	-		IAI47_09090	0.74	-0.8
1,921,982	+		IAI47_09090	0.75	-2.3
1,921,982	+		IAI47_09090	0.75	-0.7
1,921,983	-		IAI47_09090	0.75	-1.0
1,921,983	-		IAI47_09090	0.75	+0.4
1,921,983	-		IAI47_09090	0.75	+0.8
1,922,003	+		IAI47_09090	0.77	-1.0
1,922,003	+		IAI47_09090	0.77	+0.8
1,922,003	+		IAI47_09090	0.77	+1.2
1,922,003	+		IAI47_09090	0.77	-1.0
1,922,003	+		IAI47_09090	0.77	-0.9
1,922,003	+		IAI47_09090	0.77	-0.2
1,922,003	+		IAI47_09090	0.77	-1.9
1,922,003	+		IAI47_09090	0.77	+1.4
1,922,004	-		IAI47_09090	0.77	-1.7
1,922,028	+		IAI47_09090	0.80	+0.8
1,922,122	-		IAI47_09090	0.89	+1.6
1,922,122	-		IAI47_09090	0.89	-1.0
1,922,122	-		IAI47_09090	0.89	+0.5
1,922,226	+				-0.4
1,922,226	+				-0.8
1,922,226	+				+1.2
1,922,227	-				-2.4
1,922,228	+				-1.5
1,922,228	+				+1.4
1,922,229	-				+2.0
1,922,229	-				+0.3