Strain Fitness in Pantoea sp. MT58 around IAI47_08540

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,806,742	+		IAI47_08530	0.76	+0.4
1,806,753	-		IAI47_08530	0.79	-1.8
1,806,756	+		IAI47_08530	0.80	+0.2
1,806,756	+				+0.5
1,806,757	-		IAI47_08530	0.80	+0.8
1,806,794	+				+0.5
1,806,795	-				-1.7
1,806,811	-				-2.6
1,806,818	+				+4.3
1,806,819	-				+0.7
1,806,819	-				-1.1
1,806,828	+				+0.7
1,806,828	+				-0.9
1,806,829	-				+0.1
1,806,829	-				+0.2
1,806,829	-				-0.0
1,806,873	+				-0.8
1,806,873	+				-0.3
1,806,907	+				+1.2
1,806,908	-				-1.3
1,806,908	-				-2.0
1,806,908	-				-0.2
1,807,034	+		IAI47_08535	0.23	+0.5
1,807,035	-		IAI47_08535	0.23	-1.1
1,807,054	-		IAI47_08535	0.25	-0.0
1,807,072	-		IAI47_08535	0.27	-0.7
1,807,072	-		IAI47_08535	0.27	-0.3
1,807,115	+		IAI47_08535	0.32	+2.7
1,807,157	+		IAI47_08535	0.37	-0.8
1,807,187	+		IAI47_08535	0.40	+0.2
1,807,187	+		IAI47_08535	0.40	+1.5
1,807,188	-		IAI47_08535	0.40	+2.2
1,807,204	-		IAI47_08535	0.42	+1.3
1,807,229	+		IAI47_08535	0.45	+1.1
1,807,229	+		IAI47_08535	0.45	-0.7
1,807,230	-		IAI47_08535	0.45	+1.2
1,807,230	-		IAI47_08535	0.45	-0.2
1,807,230	-		IAI47_08535	0.45	-0.9
1,807,230	-		IAI47_08535	0.45	-1.5
1,807,230	-		IAI47_08535	0.45	-0.5
1,807,279	-		IAI47_08535	0.51	-1.4
1,807,296	+		IAI47_08535	0.53	-0.0
1,807,297	-		IAI47_08535	0.53	+0.4
1,807,326	-		IAI47_08535	0.56	+1.5
1,807,392	+		IAI47_08535	0.64	+0.1
1,807,392	+		IAI47_08535	0.64	-0.7
1,807,393	-		IAI47_08535	0.64	-0.2
1,807,393	-		IAI47_08535	0.64	+1.8
1,807,393	-		IAI47_08535	0.64	+1.7
1,807,393	-		IAI47_08535	0.64	+0.1
1,807,393	-		IAI47_08535	0.64	-1.3
1,807,393	-		IAI47_08535	0.64	+0.7
1,807,412	-		IAI47_08535	0.66	+1.4
1,807,412	-		IAI47_08535	0.66	-1.8
1,807,412	-		IAI47_08535	0.66	-0.3
1,807,412	-		IAI47_08535	0.66	+1.3
1,807,454	+		IAI47_08535	0.71	-0.6
1,807,455	-		IAI47_08535	0.71	+1.5
1,807,455	-		IAI47_08535	0.71	-1.8
1,807,463	+		IAI47_08535	0.72	-0.2
1,807,463	+		IAI47_08535	0.72	-0.1
1,807,464	-		IAI47_08535	0.72	-0.1
1,807,504	+		IAI47_08535	0.76	+0.4
1,807,505	-		IAI47_08535	0.76	+0.7
1,807,509	+		IAI47_08535	0.77	+0.5
1,807,509	+		IAI47_08535	0.77	-1.1
1,807,509	+		IAI47_08535	0.77	-0.1
1,807,509	+		IAI47_08535	0.77	+0.5
1,807,509	+		IAI47_08535	0.77	+0.4
1,807,509	+		IAI47_08535	0.77	+2.0
1,807,509	+		IAI47_08535	0.77	+0.5
1,807,509	+		IAI47_08535	0.77	-1.3
1,807,510	-		IAI47_08535	0.77	-0.2
1,807,510	-		IAI47_08535	0.77	+0.5
1,807,510	-		IAI47_08535	0.77	+2.0
1,807,510	-		IAI47_08535	0.77	+0.1
1,807,510	-		IAI47_08535	0.77	-0.8
1,807,510	-		IAI47_08535	0.77	-1.4
1,807,511	+		IAI47_08535	0.77	-1.1
1,807,511	+		IAI47_08535	0.77	-0.5
1,807,511	+		IAI47_08535	0.77	+0.4
1,807,511	+		IAI47_08535	0.77	+1.7
1,807,511	+		IAI47_08535	0.77	+0.1
1,807,511	+		IAI47_08535	0.77	+2.2
1,807,511	+		IAI47_08535	0.77	+0.8
1,807,511	+		IAI47_08535	0.77	+0.8
1,807,512	-		IAI47_08535	0.77	-0.0
1,807,512	-		IAI47_08535	0.77	-0.8
1,807,566	+		IAI47_08535	0.83	-0.1
1,807,567	-		IAI47_08535	0.84	+0.0
1,807,649	+				+0.7
1,807,649	+				+1.8
1,807,649	+				+0.7
1,807,650	-				-0.4
1,807,650	-				+0.1
1,807,650	-				+1.2
1,807,685	+				+1.2
1,807,685	+				-1.1
1,807,685	+				+0.5
1,807,685	+				-1.8
1,807,686	-				-1.2
1,807,714	+				+1.7
1,807,714	+				-0.7
1,807,715	-				-0.9
1,807,715	-				+1.4
1,807,715	-				-0.2
1,807,715	-				+0.2
1,807,719	+				+0.0
1,807,720	-				+3.0
1,807,734	+				-0.4
1,807,734	+				+0.8
1,807,734	+				+0.4
1,807,735	-				+0.1
1,807,735	-				-0.1
1,807,738	+				-0.2
1,807,738	+				-2.0
1,807,738	+				-0.1
1,807,738	+				+0.7
1,807,738	+				-0.2
1,807,738	+				+0.7
1,807,738	+				-0.6
1,807,738	+				+1.8
1,807,739	-				-0.1
1,807,739	-				+0.7
1,807,739	-				+1.0
1,807,739	-				-0.6
1,807,739	-				+2.2
1,807,739	-				-0.9
1,807,739	-				+0.1
1,807,739	-				-1.7
1,807,739	-				+1.2
1,807,739	-				+0.2
1,807,739	-				-0.4
1,807,739	-				-1.7
1,807,739	-				+1.1
1,807,782	+		IAI47_08540	0.12	-1.3
1,807,813	+		IAI47_08540	0.21	+0.4
1,807,814	-		IAI47_08540	0.22	-1.3
1,807,843	+		IAI47_08540	0.30	-0.2
1,807,843	+		IAI47_08540	0.30	+0.8
1,807,844	-		IAI47_08540	0.30	-2.2
1,807,844	-		IAI47_08540	0.30	-0.1
1,807,844	-		IAI47_08540	0.30	-1.2
1,807,844	-		IAI47_08540	0.30	+0.4
1,807,844	-		IAI47_08540	0.30	-1.8
1,807,844	-		IAI47_08540	0.30	+0.9
1,807,844	-		IAI47_08540	0.30	-1.4
1,807,844	-		IAI47_08540	0.30	+0.2
1,807,919	-		IAI47_08540	0.52	-0.3
1,807,931	+		IAI47_08540	0.55	-0.3
1,807,931	+		IAI47_08540	0.55	+1.4
1,807,931	+		IAI47_08540	0.55	-2.1
1,807,932	-		IAI47_08540	0.55	-1.3
1,807,963	+		IAI47_08540	0.64	+0.1
1,808,160	+				+0.4
1,808,161	-				-0.5
1,808,212	+				-0.2
1,808,212	+				-0.2
1,808,213	-				-0.8
1,808,213	-				-0.0
1,808,238	+				-0.8
1,808,238	+				-0.1
1,808,238	+				-1.8
1,808,239	-				+0.8
1,808,239	-				-2.1
1,808,239	-				-0.6
1,808,292	-				-0.8
1,808,293	+				+1.2
1,808,294	-				-0.2
1,808,331	+				-0.2
1,808,332	-				-1.0
1,808,342	+				+3.2
1,808,361	+				-1.4
1,808,362	-				+0.4
1,808,377	-				+0.2
1,808,377	-				+0.3
1,808,388	+				+0.6
1,808,388	+				-0.5
1,808,458	+				-1.3
1,808,458	+				-1.0
1,808,484	-				+0.2
1,808,486	+				+2.7
1,808,486	+				+0.6
1,808,487	-				-2.0
1,808,487	-				-1.5
1,808,487	-				+0.8
1,808,487	-				+0.7
1,808,490	+				+0.8
1,808,490	+				-0.8
1,808,491	-				+0.5
1,808,491	-				+1.1
1,808,491	-				-1.1
1,808,494	+				+0.4
1,808,494	+				+0.8
1,808,494	+				-0.5
1,808,494	+				-0.8
1,808,495	-				+0.9
1,808,507	+				+2.2
1,808,507	+				+0.4
1,808,507	+				+2.7
1,808,508	-				+0.8
1,808,508	-				-1.1
1,808,508	-				-0.5
1,808,509	+				-0.2
1,808,509	+				-0.4
1,808,510	-				-0.6
1,808,511	-				-2.7
1,808,522	+				-0.8
1,808,523	-				+0.0
1,808,526	+				+0.7
1,808,526	+				-0.3
1,808,527	-				+0.7
1,808,527	-				-0.2
1,808,527	-				-0.3
1,808,527	-				-0.8
1,808,527	-				+0.8
1,808,532	+				-0.3
1,808,532	+				+0.9
1,808,532	+				+0.7
1,808,532	+				+0.1
1,808,532	+				+1.2
1,808,533	-				+0.7
1,808,533	-				+0.9
1,808,533	-				+0.7
1,808,533	-				-0.6
1,808,533	-				+0.4
1,808,533	-				+1.0
1,808,533	-				-0.9
1,808,555	-				+0.2
1,808,590	-				+0.1
1,808,614	+				+0.9
1,808,614	+				+2.2
1,808,636	+				-0.1
1,808,636	+				-0.9
1,808,642	+				-0.9
1,808,642	+				-0.9
1,808,642	+				-0.3
1,808,642	+				+0.7
1,808,642	+				+0.0
1,808,726	+				-0.5
1,808,726	+				-1.2
1,808,726	+				-0.5
1,808,726	+				-1.4
1,808,745	+				+0.2
1,808,745	+				+0.5
1,808,764	+				-0.1
1,808,765	-				+0.5
1,808,782	+				+0.4
1,808,782	+				+1.6
1,808,782	+				+0.9
1,808,783	-				-0.8
1,808,783	-				+0.4
1,808,855	+				-0.7
1,808,855	+				+0.3
1,808,855	+				+1.1
1,808,858	+				+1.9
1,808,858	+				+0.2
1,808,858	+				+0.2
1,808,858	+				-0.1
1,808,858	+				+0.9
1,808,859	-				+2.9
1,808,961	+				-1.0
1,808,961	+				+0.7
1,808,962	-				+0.4
1,808,968	+				-0.5
1,808,968	+				+0.2
1,808,978	+				+2.7
1,808,978	+				-1.8
1,808,978	+				-1.1
1,808,978	+				-2.0
1,808,978	+				-0.8
1,808,978	+				+0.2
1,808,979	-				+0.5
1,809,004	+				+0.1
1,809,004	+				-0.2
1,809,004	+				-2.5
1,809,075	+		IAI47_08545	0.22	-1.8
1,809,075	+		IAI47_08545	0.22	-1.2
1,809,076	-		IAI47_08545	0.22	+0.4
1,809,076	-		IAI47_08545	0.22	+0.9