Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04495 and IAI47_04500 are separated by 16 nucleotides IAI47_04500 and IAI47_04505 are separated by 150 nucleotides IAI47_04505 and IAI47_04510 are separated by 301 nucleotides
IAI47_04495: IAI47_04495 - multidrug efflux MFS transporter permease subunit EmrB, at 945,819 to 947,354
_04495
IAI47_04500: IAI47_04500 - multidrug efflux MFS transporter periplasmic adaptor subunit EmrA, at 947,371 to 948,543
_04500
IAI47_04505: IAI47_04505 - transcriptional repressor MprA, at 948,694 to 949,224
_04505
IAI47_04510: IAI47_04510 - MFS transporter, at 949,526 to 950,713
_04510
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 946.371 kb on - strand, within IAI47_04495 at 946.371 kb on - strand, within IAI47_04495 at 946.411 kb on - strand, within IAI47_04495 at 946.411 kb on - strand, within IAI47_04495 at 946.411 kb on - strand, within IAI47_04495 at 946.419 kb on + strand, within IAI47_04495 at 946.454 kb on + strand, within IAI47_04495 at 946.454 kb on + strand, within IAI47_04495 at 946.454 kb on + strand, within IAI47_04495 at 946.455 kb on - strand, within IAI47_04495 at 946.456 kb on + strand, within IAI47_04495 at 946.462 kb on + strand, within IAI47_04495 at 946.462 kb on + strand, within IAI47_04495 at 946.463 kb on - strand, within IAI47_04495 at 946.463 kb on - strand, within IAI47_04495 at 946.495 kb on - strand, within IAI47_04495 at 946.495 kb on - strand, within IAI47_04495 at 946.495 kb on - strand, within IAI47_04495 at 946.508 kb on - strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.516 kb on + strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.517 kb on - strand, within IAI47_04495 at 946.547 kb on + strand, within IAI47_04495 at 946.547 kb on + strand, within IAI47_04495 at 946.548 kb on - strand, within IAI47_04495 at 946.548 kb on - strand, within IAI47_04495 at 946.562 kb on + strand, within IAI47_04495 at 946.562 kb on + strand, within IAI47_04495 at 946.563 kb on - strand, within IAI47_04495 at 946.563 kb on - strand, within IAI47_04495 at 946.648 kb on - strand, within IAI47_04495 at 946.648 kb on - strand, within IAI47_04495 at 946.655 kb on + strand, within IAI47_04495 at 946.656 kb on - strand, within IAI47_04495 at 946.670 kb on + strand, within IAI47_04495 at 946.710 kb on + strand, within IAI47_04495 at 946.711 kb on - strand, within IAI47_04495 at 946.711 kb on - strand, within IAI47_04495 at 946.776 kb on - strand, within IAI47_04495 at 946.809 kb on + strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.810 kb on - strand, within IAI47_04495 at 946.841 kb on + strand, within IAI47_04495 at 946.841 kb on + strand, within IAI47_04495 at 946.841 kb on + strand, within IAI47_04495 at 946.842 kb on - strand, within IAI47_04495 at 946.842 kb on - strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.864 kb on + strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.865 kb on - strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.868 kb on + strand, within IAI47_04495 at 946.869 kb on - strand, within IAI47_04495 at 946.869 kb on - strand, within IAI47_04495 at 946.869 kb on - strand, within IAI47_04495 at 946.966 kb on + strand, within IAI47_04495 at 946.967 kb on - strand, within IAI47_04495 at 946.967 kb on - strand, within IAI47_04495 at 947.058 kb on - strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.066 kb on + strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.067 kb on - strand, within IAI47_04495 at 947.197 kb on - strand, within IAI47_04495 at 947.204 kb on + strand at 947.243 kb on + strand at 947.243 kb on + strand at 947.243 kb on + strand at 947.244 kb on - strand at 947.355 kb on + strand at 947.355 kb on + strand at 947.356 kb on - strand at 947.450 kb on + strand at 947.451 kb on - strand at 947.451 kb on - strand at 947.451 kb on - strand at 947.476 kb on - strand at 947.505 kb on + strand, within IAI47_04500 at 947.613 kb on + strand, within IAI47_04500 at 947.620 kb on - strand, within IAI47_04500 at 947.690 kb on + strand, within IAI47_04500 at 947.691 kb on - strand, within IAI47_04500 at 947.691 kb on - strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.708 kb on + strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.709 kb on - strand, within IAI47_04500 at 947.746 kb on + strand, within IAI47_04500 at 947.746 kb on + strand, within IAI47_04500 at 947.747 kb on - strand, within IAI47_04500 at 947.747 kb on - strand, within IAI47_04500 at 947.747 kb on - strand, within IAI47_04500 at 947.973 kb on + strand, within IAI47_04500 at 947.974 kb on - strand, within IAI47_04500 at 947.974 kb on - strand, within IAI47_04500 at 947.994 kb on + strand, within IAI47_04500 at 947.995 kb on - strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.000 kb on + strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.001 kb on - strand, within IAI47_04500 at 948.002 kb on + strand, within IAI47_04500 at 948.002 kb on + strand, within IAI47_04500 at 948.002 kb on + strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.003 kb on - strand, within IAI47_04500 at 948.034 kb on - strand, within IAI47_04500 at 948.087 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.091 kb on + strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.092 kb on - strand, within IAI47_04500 at 948.156 kb on + strand, within IAI47_04500 at 948.156 kb on + strand, within IAI47_04500 at 948.156 kb on + strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.157 kb on - strand, within IAI47_04500 at 948.170 kb on + strand, within IAI47_04500 at 948.170 kb on + strand, within IAI47_04500 at 948.171 kb on - strand, within IAI47_04500 at 948.264 kb on + strand, within IAI47_04500 at 948.307 kb on - strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.366 kb on + strand, within IAI47_04500 at 948.367 kb on - strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.377 kb on + strand, within IAI47_04500 at 948.378 kb on - strand, within IAI47_04500 at 948.378 kb on - strand, within IAI47_04500 at 948.423 kb on - strand, within IAI47_04500 at 948.423 kb on - strand, within IAI47_04500 at 948.439 kb on - strand at 948.439 kb on - strand at 948.439 kb on - strand at 948.439 kb on - strand at 948.499 kb on - strand at 948.567 kb on - strand at 948.622 kb on + strand at 948.623 kb on - strand at 948.623 kb on - strand at 948.638 kb on - strand at 948.650 kb on + strand at 948.651 kb on - strand at 948.655 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.686 kb on + strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.687 kb on - strand at 948.692 kb on + strand at 948.692 kb on + strand at 948.695 kb on + strand at 948.695 kb on + strand at 948.696 kb on - strand at 948.696 kb on - strand at 948.747 kb on + strand, within IAI47_04505 at 948.748 kb on - strand, within IAI47_04505 at 948.756 kb on + strand, within IAI47_04505 at 948.763 kb on - strand, within IAI47_04505 at 948.765 kb on + strand, within IAI47_04505 at 948.765 kb on + strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.766 kb on - strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.812 kb on + strand, within IAI47_04505 at 948.813 kb on - strand, within IAI47_04505 at 948.813 kb on - strand, within IAI47_04505 at 948.813 kb on - strand, within IAI47_04505 at 948.868 kb on - strand, within IAI47_04505 at 949.038 kb on + strand, within IAI47_04505 at 949.038 kb on + strand, within IAI47_04505 at 949.090 kb on - strand, within IAI47_04505 at 949.093 kb on - strand, within IAI47_04505 at 949.093 kb on - strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.119 kb on + strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.120 kb on - strand, within IAI47_04505 at 949.125 kb on + strand, within IAI47_04505 at 949.125 kb on + strand, within IAI47_04505 at 949.126 kb on - strand, within IAI47_04505 at 949.126 kb on - strand, within IAI47_04505 at 949.143 kb on + strand, within IAI47_04505 at 949.167 kb on + strand, within IAI47_04505 at 949.189 kb on + strand at 949.189 kb on + strand at 949.189 kb on + strand at 949.190 kb on - strand at 949.240 kb on + strand at 949.240 kb on + strand at 949.241 kb on - strand at 949.253 kb on + strand at 949.254 kb on - strand at 949.254 kb on - strand at 949.254 kb on - strand at 949.256 kb on - strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.258 kb on + strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.259 kb on - strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.262 kb on + strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.263 kb on - strand at 949.275 kb on + strand at 949.281 kb on + strand at 949.282 kb on - strand at 949.324 kb on + strand at 949.325 kb on - strand at 949.325 kb on - strand at 949.336 kb on + strand at 949.336 kb on + strand at 949.337 kb on - strand at 949.374 kb on + strand at 949.374 kb on + strand at 949.424 kb on + strand at 949.427 kb on + strand at 949.430 kb on + strand at 949.458 kb on + strand at 949.459 kb on - strand at 949.467 kb on + strand at 949.467 kb on + strand at 949.468 kb on - strand at 949.470 kb on + strand at 949.471 kb on - strand at 949.471 kb on - strand at 949.485 kb on + strand at 949.486 kb on - strand at 949.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 946,371 - IAI47_04495 0.36 +1.7 946,371 - IAI47_04495 0.36 +1.8 946,411 - IAI47_04495 0.39 +0.3 946,411 - IAI47_04495 0.39 +1.4 946,411 - IAI47_04495 0.39 -0.3 946,419 + IAI47_04495 0.39 -2.4 946,454 + IAI47_04495 0.41 +1.7 946,454 + IAI47_04495 0.41 +0.3 946,454 + IAI47_04495 0.41 +0.5 946,455 - IAI47_04495 0.41 +0.1 946,456 + IAI47_04495 0.41 +0.4 946,462 + IAI47_04495 0.42 +1.7 946,462 + IAI47_04495 0.42 -2.0 946,463 - IAI47_04495 0.42 +1.7 946,463 - IAI47_04495 0.42 +1.2 946,495 - IAI47_04495 0.44 +0.8 946,495 - IAI47_04495 0.44 -1.4 946,495 - IAI47_04495 0.44 -1.3 946,508 - IAI47_04495 0.45 +1.1 946,516 + IAI47_04495 0.45 +1.0 946,516 + IAI47_04495 0.45 +0.4 946,516 + IAI47_04495 0.45 -2.4 946,516 + IAI47_04495 0.45 +0.4 946,517 - IAI47_04495 0.45 -0.0 946,517 - IAI47_04495 0.45 -0.6 946,517 - IAI47_04495 0.45 -0.1 946,517 - IAI47_04495 0.45 -0.8 946,517 - IAI47_04495 0.45 +0.8 946,517 - IAI47_04495 0.45 -0.2 946,547 + IAI47_04495 0.47 +0.4 946,547 + IAI47_04495 0.47 +1.3 946,548 - IAI47_04495 0.47 +1.7 946,548 - IAI47_04495 0.47 -0.9 946,562 + IAI47_04495 0.48 -1.2 946,562 + IAI47_04495 0.48 +0.7 946,563 - IAI47_04495 0.48 +1.5 946,563 - IAI47_04495 0.48 +0.2 946,648 - IAI47_04495 0.54 +0.2 946,648 - IAI47_04495 0.54 -0.2 946,655 + IAI47_04495 0.54 -1.4 946,656 - IAI47_04495 0.54 +0.5 946,670 + IAI47_04495 0.55 +1.4 946,710 + IAI47_04495 0.58 -0.8 946,711 - IAI47_04495 0.58 +0.6 946,711 - IAI47_04495 0.58 -0.0 946,776 - IAI47_04495 0.62 +0.7 946,809 + IAI47_04495 0.64 -0.4 946,810 - IAI47_04495 0.65 -0.5 946,810 - IAI47_04495 0.65 +0.1 946,810 - IAI47_04495 0.65 +0.0 946,810 - IAI47_04495 0.65 -1.2 946,841 + IAI47_04495 0.67 -0.4 946,841 + IAI47_04495 0.67 +1.3 946,841 + IAI47_04495 0.67 -0.4 946,842 - IAI47_04495 0.67 -0.3 946,842 - IAI47_04495 0.67 -0.0 946,864 + IAI47_04495 0.68 -1.6 946,864 + IAI47_04495 0.68 -0.4 946,864 + IAI47_04495 0.68 +0.7 946,864 + IAI47_04495 0.68 +0.3 946,864 + IAI47_04495 0.68 +0.4 946,864 + IAI47_04495 0.68 -1.8 946,864 + IAI47_04495 0.68 +0.4 946,864 + IAI47_04495 0.68 +1.7 946,865 - IAI47_04495 0.68 +1.9 946,865 - IAI47_04495 0.68 +0.9 946,865 - IAI47_04495 0.68 +1.7 946,865 - IAI47_04495 0.68 +0.1 946,865 - IAI47_04495 0.68 +2.3 946,865 - IAI47_04495 0.68 +0.4 946,868 + IAI47_04495 0.68 -0.9 946,868 + IAI47_04495 0.68 +0.0 946,868 + IAI47_04495 0.68 -0.7 946,868 + IAI47_04495 0.68 -0.3 946,869 - IAI47_04495 0.68 -0.2 946,869 - IAI47_04495 0.68 -2.2 946,869 - IAI47_04495 0.68 -0.1 946,966 + IAI47_04495 0.75 +0.1 946,967 - IAI47_04495 0.75 +1.1 946,967 - IAI47_04495 0.75 +1.0 947,058 - IAI47_04495 0.81 -0.6 947,066 + IAI47_04495 0.81 +0.6 947,066 + IAI47_04495 0.81 -0.9 947,066 + IAI47_04495 0.81 +1.5 947,066 + IAI47_04495 0.81 +2.3 947,066 + IAI47_04495 0.81 +0.7 947,066 + IAI47_04495 0.81 -0.0 947,067 - IAI47_04495 0.81 -0.9 947,067 - IAI47_04495 0.81 -0.7 947,067 - IAI47_04495 0.81 +0.8 947,067 - IAI47_04495 0.81 +1.4 947,067 - IAI47_04495 0.81 +0.4 947,197 - IAI47_04495 0.90 +1.0 947,204 + +2.4 947,243 + -0.5 947,243 + -0.6 947,243 + +0.8 947,244 - +4.0 947,355 + +1.9 947,355 + -0.9 947,356 - -2.2 947,450 + +1.3 947,451 - -1.2 947,451 - +0.1 947,451 - -0.5 947,476 - +1.7 947,505 + IAI47_04500 0.11 -0.7 947,613 + IAI47_04500 0.21 +0.5 947,620 - IAI47_04500 0.21 -0.5 947,690 + IAI47_04500 0.27 +0.1 947,691 - IAI47_04500 0.27 -0.1 947,691 - IAI47_04500 0.27 +1.4 947,708 + IAI47_04500 0.29 +0.3 947,708 + IAI47_04500 0.29 -0.2 947,708 + IAI47_04500 0.29 -1.5 947,708 + IAI47_04500 0.29 -1.7 947,708 + IAI47_04500 0.29 +2.2 947,708 + IAI47_04500 0.29 -0.6 947,708 + IAI47_04500 0.29 -0.7 947,709 - IAI47_04500 0.29 +1.8 947,709 - IAI47_04500 0.29 -0.2 947,709 - IAI47_04500 0.29 +0.1 947,709 - IAI47_04500 0.29 +1.6 947,709 - IAI47_04500 0.29 +1.2 947,709 - IAI47_04500 0.29 +2.4 947,709 - IAI47_04500 0.29 +0.3 947,709 - IAI47_04500 0.29 +0.3 947,746 + IAI47_04500 0.32 +0.1 947,746 + IAI47_04500 0.32 -0.9 947,747 - IAI47_04500 0.32 +0.1 947,747 - IAI47_04500 0.32 +0.1 947,747 - IAI47_04500 0.32 +0.3 947,973 + IAI47_04500 0.51 -0.9 947,974 - IAI47_04500 0.51 -0.3 947,974 - IAI47_04500 0.51 +0.1 947,994 + IAI47_04500 0.53 -0.5 947,995 - 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Or see this region's nucleotide sequence