Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03315 and IAI47_03320 are separated by 60 nucleotides IAI47_03320 and IAI47_03325 are separated by 488 nucleotides
IAI47_03315: IAI47_03315 - glycoside hydrolase family 31 protein, at 692,653 to 695,016
_03315
IAI47_03320: IAI47_03320 - non-heme ferritin, at 695,077 to 695,583
_03320
IAI47_03325: IAI47_03325 - hypothetical protein, at 696,072 to 696,740
_03325
Position (kb) 695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.096 kb on + strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.097 kb on - strand, within IAI47_03315 at 694.120 kb on - strand, within IAI47_03315 at 694.147 kb on + strand, within IAI47_03315 at 694.148 kb on - strand, within IAI47_03315 at 694.192 kb on - strand, within IAI47_03315 at 694.227 kb on + strand, within IAI47_03315 at 694.336 kb on + strand, within IAI47_03315 at 694.396 kb on + strand, within IAI47_03315 at 694.396 kb on + strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.397 kb on - strand, within IAI47_03315 at 694.402 kb on + strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.403 kb on - strand, within IAI47_03315 at 694.486 kb on + strand, within IAI47_03315 at 694.487 kb on - strand, within IAI47_03315 at 694.487 kb on - strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.506 kb on + strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.507 kb on - strand, within IAI47_03315 at 694.542 kb on - strand, within IAI47_03315 at 694.542 kb on - strand, within IAI47_03315 at 694.570 kb on + strand, within IAI47_03315 at 694.570 kb on + strand, within IAI47_03315 at 694.570 kb on + strand at 694.570 kb on + strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.571 kb on - strand, within IAI47_03315 at 694.597 kb on + strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.598 kb on - strand, within IAI47_03315 at 694.614 kb on + strand, within IAI47_03315 at 694.615 kb on - strand, within IAI47_03315 at 694.781 kb on + strand at 694.781 kb on + strand at 694.782 kb on - strand at 694.782 kb on - strand at 694.782 kb on - strand at 694.853 kb on + strand at 694.853 kb on + strand at 694.946 kb on + strand at 694.946 kb on + strand at 694.946 kb on + strand at 694.947 kb on - strand at 694.947 kb on - strand at 694.989 kb on + strand at 695.025 kb on + strand at 695.025 kb on + strand at 695.025 kb on + strand at 695.025 kb on + strand at 695.026 kb on - strand at 695.026 kb on - strand at 695.026 kb on - strand at 695.045 kb on + strand at 695.045 kb on + strand at 695.045 kb on + strand at 695.046 kb on - strand at 695.046 kb on - strand at 695.046 kb on - strand at 695.071 kb on + strand at 695.071 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.075 kb on + strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.076 kb on - strand at 695.078 kb on + strand at 695.119 kb on - strand at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.216 kb on + strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.217 kb on - strand, within IAI47_03320 at 695.238 kb on + strand, within IAI47_03320 at 695.238 kb on + strand, within IAI47_03320 at 695.238 kb on + strand, within IAI47_03320 at 695.239 kb on - strand, within IAI47_03320 at 695.239 kb on - strand, within IAI47_03320 at 695.239 kb on - strand, within IAI47_03320 at 695.243 kb on + strand, within IAI47_03320 at 695.243 kb on + strand, within IAI47_03320 at 695.244 kb on - strand, within IAI47_03320 at 695.244 kb on - strand, within IAI47_03320 at 695.244 kb on - strand, within IAI47_03320 at 695.343 kb on + strand, within IAI47_03320 at 695.370 kb on + strand, within IAI47_03320 at 695.406 kb on - strand, within IAI47_03320 at 695.406 kb on - strand, within IAI47_03320 at 695.406 kb on - strand, within IAI47_03320 at 695.514 kb on - strand, within IAI47_03320 at 695.514 kb on - strand, within IAI47_03320 at 695.554 kb on + strand at 695.555 kb on - strand at 695.597 kb on + strand at 695.598 kb on - strand at 695.609 kb on - strand at 695.612 kb on + strand at 695.612 kb on + strand at 695.613 kb on - strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.621 kb on - strand at 695.634 kb on + strand at 695.634 kb on + strand at 695.635 kb on - strand at 695.635 kb on - strand at 695.635 kb on - strand at 695.653 kb on + strand at 695.654 kb on - strand at 695.654 kb on - strand at 695.677 kb on + strand at 695.678 kb on - strand at 695.683 kb on - strand at 695.683 kb on - strand at 695.683 kb on - strand at 695.683 kb on - strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.751 kb on + strand at 695.752 kb on - strand at 695.752 kb on - strand at 695.752 kb on - strand at 695.767 kb on + strand at 695.767 kb on + strand at 695.768 kb on - strand at 695.768 kb on - strand at 695.768 kb on - strand at 695.778 kb on - strand at 695.778 kb on - strand at 695.792 kb on + strand at 695.792 kb on + strand at 695.793 kb on - strand at 695.793 kb on - strand at 695.845 kb on + strand at 695.846 kb on - strand at 695.874 kb on - strand at 695.875 kb on + strand at 695.875 kb on + strand at 695.875 kb on + strand at 695.875 kb on + strand at 695.876 kb on - strand at 695.886 kb on + strand at 695.886 kb on + strand at 695.887 kb on - strand at 695.887 kb on - strand at 695.888 kb on + strand at 695.889 kb on - strand at 695.889 kb on - strand at 695.897 kb on + strand at 695.897 kb on + strand at 695.898 kb on - strand at 695.898 kb on - strand at 695.907 kb on - strand at 695.912 kb on + strand at 695.913 kb on - strand at 695.913 kb on - strand at 695.913 kb on - strand at 695.914 kb on + strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.915 kb on - strand at 695.916 kb on + strand at 695.916 kb on + strand at 695.916 kb on + strand at 695.916 kb on + strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.917 kb on - strand at 695.918 kb on - strand at 695.929 kb on + strand at 695.929 kb on + strand at 695.929 kb on + strand at 695.930 kb on - strand at 695.930 kb on - strand at 695.960 kb on - strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.962 kb on + strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.963 kb on - strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.968 kb on + strand at 695.969 kb on - strand at 695.969 kb on - strand at 695.989 kb on - strand at 696.057 kb on + strand at 696.058 kb on - strand at 696.058 kb on - strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.126 kb on + strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.127 kb on - strand at 696.171 kb on + strand, within IAI47_03325 at 696.172 kb on - strand, within IAI47_03325 at 696.172 kb on - strand, within IAI47_03325 at 696.236 kb on + strand, within IAI47_03325 at 696.237 kb on - strand, within IAI47_03325 at 696.369 kb on + strand, within IAI47_03325 at 696.369 kb on + strand, within IAI47_03325 at 696.369 kb on + strand, within IAI47_03325 at 696.370 kb on - strand, within IAI47_03325 at 696.370 kb on - strand, within IAI47_03325 at 696.414 kb on - strand, within IAI47_03325 at 696.414 kb on - strand, within IAI47_03325 at 696.430 kb on + strand, within IAI47_03325 at 696.431 kb on - strand, within IAI47_03325 at 696.431 kb on - strand, within IAI47_03325 at 696.578 kb on - strand, within IAI47_03325
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 694,096 + IAI47_03315 0.61 +0.6 694,096 + IAI47_03315 0.61 -1.5 694,096 + IAI47_03315 0.61 -2.7 694,096 + IAI47_03315 0.61 +0.2 694,096 + IAI47_03315 0.61 -0.5 694,096 + IAI47_03315 0.61 -0.7 694,096 + IAI47_03315 0.61 +1.7 694,096 + IAI47_03315 0.61 +0.0 694,097 - IAI47_03315 0.61 +0.9 694,097 - IAI47_03315 0.61 +0.8 694,097 - IAI47_03315 0.61 +0.8 694,097 - IAI47_03315 0.61 +0.1 694,097 - IAI47_03315 0.61 +3.5 694,097 - IAI47_03315 0.61 -0.9 694,120 - IAI47_03315 0.62 +0.5 694,147 + IAI47_03315 0.63 +0.8 694,148 - IAI47_03315 0.63 -0.9 694,192 - IAI47_03315 0.65 +0.8 694,227 + IAI47_03315 0.67 +0.9 694,336 + IAI47_03315 0.71 -0.4 694,396 + IAI47_03315 0.74 +0.1 694,396 + IAI47_03315 0.74 +2.2 694,397 - IAI47_03315 0.74 -0.4 694,397 - IAI47_03315 0.74 -0.7 694,397 - IAI47_03315 0.74 -0.0 694,397 - IAI47_03315 0.74 +0.0 694,402 + IAI47_03315 0.74 -1.9 694,403 - IAI47_03315 0.74 +0.0 694,403 - IAI47_03315 0.74 +0.3 694,403 - IAI47_03315 0.74 +1.5 694,403 - IAI47_03315 0.74 -0.3 694,486 + IAI47_03315 0.78 +0.3 694,487 - IAI47_03315 0.78 +1.6 694,487 - IAI47_03315 0.78 +0.7 694,506 + IAI47_03315 0.78 +0.8 694,506 + IAI47_03315 0.78 +1.0 694,506 + IAI47_03315 0.78 +0.1 694,506 + IAI47_03315 0.78 +0.4 694,507 - IAI47_03315 0.78 -1.0 694,507 - IAI47_03315 0.78 -1.4 694,507 - IAI47_03315 0.78 -0.5 694,507 - IAI47_03315 0.78 -0.6 694,507 - IAI47_03315 0.78 +0.7 694,507 - IAI47_03315 0.78 -0.5 694,507 - IAI47_03315 0.78 -0.5 694,507 - IAI47_03315 0.78 -0.4 694,542 - IAI47_03315 0.80 -1.8 694,542 - IAI47_03315 0.80 +1.9 694,570 + IAI47_03315 0.81 -0.2 694,570 + IAI47_03315 0.81 -1.8 694,570 + -1.6 694,570 + IAI47_03315 0.81 +0.0 694,571 - IAI47_03315 0.81 -1.2 694,571 - IAI47_03315 0.81 +1.3 694,571 - IAI47_03315 0.81 -0.3 694,571 - IAI47_03315 0.81 -0.8 694,571 - IAI47_03315 0.81 +1.1 694,597 + IAI47_03315 0.82 +0.9 694,598 - IAI47_03315 0.82 -0.2 694,598 - IAI47_03315 0.82 -0.5 694,598 - IAI47_03315 0.82 -0.1 694,598 - IAI47_03315 0.82 +0.9 694,614 + IAI47_03315 0.83 +0.4 694,615 - IAI47_03315 0.83 -0.6 694,781 + +1.2 694,781 + -0.3 694,782 - +2.0 694,782 - -0.1 694,782 - +0.3 694,853 + -0.9 694,853 + -1.1 694,946 + -0.3 694,946 + -2.6 694,946 + -0.9 694,947 - -0.7 694,947 - +0.3 694,989 + -1.5 695,025 + -0.4 695,025 + +1.0 695,025 + -0.7 695,025 + -0.4 695,026 - -1.4 695,026 - -0.4 695,026 - +0.3 695,045 + +0.9 695,045 + +0.5 695,045 + +0.5 695,046 - -0.7 695,046 - +1.5 695,046 - -0.4 695,071 + +1.3 695,071 + +0.6 695,075 + +0.0 695,075 + -0.1 695,075 + +1.6 695,075 + +0.3 695,075 + -1.8 695,075 + -1.9 695,075 + +0.2 695,075 + -0.2 695,076 - -0.2 695,076 - +0.6 695,076 - -0.9 695,076 - +0.9 695,076 - -0.1 695,076 - -1.0 695,078 + +0.8 695,119 - +0.0 695,216 + IAI47_03320 0.27 -1.0 695,216 + IAI47_03320 0.27 +0.2 695,216 + IAI47_03320 0.27 -0.4 695,216 + IAI47_03320 0.27 +1.0 695,216 + IAI47_03320 0.27 +1.2 695,216 + IAI47_03320 0.27 -0.5 695,216 + IAI47_03320 0.27 +2.1 695,216 + IAI47_03320 0.27 +0.8 695,216 + IAI47_03320 0.27 +0.5 695,217 - IAI47_03320 0.28 +0.3 695,217 - IAI47_03320 0.28 +1.6 695,217 - IAI47_03320 0.28 +0.9 695,217 - IAI47_03320 0.28 +1.9 695,217 - IAI47_03320 0.28 +0.2 695,217 - IAI47_03320 0.28 -0.5 695,217 - IAI47_03320 0.28 -0.1 695,217 - IAI47_03320 0.28 +1.2 695,238 + IAI47_03320 0.32 +1.3 695,238 + IAI47_03320 0.32 +0.9 695,238 + IAI47_03320 0.32 +1.3 695,239 - IAI47_03320 0.32 -0.1 695,239 - IAI47_03320 0.32 +1.2 695,239 - IAI47_03320 0.32 +0.9 695,243 + IAI47_03320 0.33 +1.0 695,243 + IAI47_03320 0.33 -0.2 695,244 - IAI47_03320 0.33 -0.5 695,244 - IAI47_03320 0.33 -1.1 695,244 - IAI47_03320 0.33 +1.0 695,343 + IAI47_03320 0.52 -0.4 695,370 + IAI47_03320 0.58 -0.1 695,406 - IAI47_03320 0.65 +0.5 695,406 - IAI47_03320 0.65 +2.4 695,406 - IAI47_03320 0.65 -0.2 695,514 - IAI47_03320 0.86 +0.3 695,514 - IAI47_03320 0.86 +0.1 695,554 + +1.1 695,555 - +0.9 695,597 + -1.1 695,598 - -1.1 695,609 - -1.5 695,612 + -0.6 695,612 + -0.5 695,613 - -1.6 695,620 + +0.5 695,620 + +0.2 695,620 + -2.7 695,621 - +0.5 695,621 - -1.6 695,621 - -1.1 695,621 - -0.2 695,621 - +1.5 695,634 + -0.9 695,634 + +0.5 695,635 - +0.6 695,635 - +0.7 695,635 - -0.6 695,653 + +0.9 695,654 - -0.5 695,654 - +0.3 695,677 + -1.0 695,678 - +2.2 695,683 - +0.3 695,683 - -1.9 695,683 - +0.1 695,683 - -0.9 695,751 + -0.3 695,751 + -0.7 695,751 + +1.1 695,751 + -1.0 695,751 + +1.5 695,752 - -0.5 695,752 - -0.1 695,752 - -1.5 695,767 + +0.5 695,767 + +0.2 695,768 - -2.3 695,768 - -0.0 695,768 - -0.2 695,778 - +0.1 695,778 - +0.5 695,792 + +1.6 695,792 + -0.0 695,793 - -0.1 695,793 - +1.1 695,845 + +0.3 695,846 - -0.7 695,874 - +0.3 695,875 + +5.0 695,875 + -1.9 695,875 + -0.7 695,875 + +3.5 695,876 - -0.3 695,886 + -0.3 695,886 + -0.8 695,887 - +2.6 695,887 - -0.1 695,888 + -0.1 695,889 - +0.9 695,889 - +0.4 695,897 + -2.5 695,897 + -0.2 695,898 - +1.5 695,898 - +0.1 695,907 - -1.5 695,912 + +2.6 695,913 - -0.1 695,913 - -0.4 695,913 - -0.7 695,914 + +1.0 695,915 - +1.7 695,915 - -2.1 695,915 - -0.9 695,915 - +0.9 695,915 - -1.9 695,916 + +0.3 695,916 + -1.3 695,916 + +1.3 695,916 + +0.2 695,917 - -0.9 695,917 - -0.7 695,917 - +0.5 695,917 - +1.0 695,917 - -0.8 695,918 - -3.1 695,929 + -1.0 695,929 + +1.5 695,929 + +1.3 695,930 - +1.0 695,930 - +0.3 695,960 - -0.1 695,962 + +2.3 695,962 + -0.2 695,962 + -1.5 695,962 + -0.0 695,963 - -0.5 695,963 - -0.2 695,963 - -0.6 695,963 - +1.1 695,963 - +0.8 695,963 - -0.9 695,968 + +1.1 695,968 + -0.4 695,968 + +1.0 695,968 + +0.1 695,969 - +0.7 695,969 - +0.9 695,989 - -0.9 696,057 + +0.3 696,058 - -1.5 696,058 - -0.2 696,126 + +1.1 696,126 + +1.1 696,126 + +1.1 696,126 + +1.0 696,126 + +1.2 696,126 + -1.1 696,126 + -2.1 696,127 - -1.5 696,127 - -1.5 696,127 - -1.1 696,127 - -0.4 696,127 - -1.5 696,127 - -0.8 696,127 - +0.2 696,127 - -0.1 696,171 + IAI47_03325 0.15 +1.2 696,172 - IAI47_03325 0.15 -0.5 696,172 - IAI47_03325 0.15 +1.2 696,236 + IAI47_03325 0.25 -1.9 696,237 - IAI47_03325 0.25 +0.2 696,369 + IAI47_03325 0.44 -2.3 696,369 + IAI47_03325 0.44 -0.7 696,369 + IAI47_03325 0.44 -0.2 696,370 - IAI47_03325 0.45 +1.2 696,370 - IAI47_03325 0.45 -1.2 696,414 - IAI47_03325 0.51 -0.5 696,414 - IAI47_03325 0.51 -0.2 696,430 + IAI47_03325 0.54 +1.2 696,431 - IAI47_03325 0.54 +0.6 696,431 - IAI47_03325 0.54 -1.2 696,578 - IAI47_03325 0.76 -1.8
Or see this region's nucleotide sequence