Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02905 and IAI47_02910 are separated by 399 nucleotides IAI47_02910 and IAI47_02915 are separated by 2 nucleotides
IAI47_02905: IAI47_02905 - MFS transporter, at 595,916 to 597,220
_02905
IAI47_02910: IAI47_02910 - glucuronate isomerase, at 597,620 to 599,035
_02910
IAI47_02915: IAI47_02915 - tagaturonate reductase, at 599,038 to 600,486
_02915
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 596.620 kb on - strand, within IAI47_02905 at 596.620 kb on - strand, within IAI47_02905 at 596.620 kb on - strand, within IAI47_02905 at 596.620 kb on - strand, within IAI47_02905 at 596.667 kb on + strand, within IAI47_02905 at 596.667 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.804 kb on - strand, within IAI47_02905 at 596.804 kb on - strand, within IAI47_02905 at 596.808 kb on + strand, within IAI47_02905 at 596.808 kb on + strand, within IAI47_02905 at 596.809 kb on - strand, within IAI47_02905 at 596.809 kb on - strand, within IAI47_02905 at 596.813 kb on + strand, within IAI47_02905 at 596.814 kb on - strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 597.021 kb on + strand, within IAI47_02905 at 597.022 kb on - strand, within IAI47_02905 at 597.022 kb on - strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.049 kb on - strand, within IAI47_02905 at 597.049 kb on - strand, within IAI47_02905 at 597.049 kb on - strand, within IAI47_02905 at 597.061 kb on - strand, within IAI47_02905 at 597.061 kb on - strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.081 kb on + strand, within IAI47_02905 at 597.081 kb on + strand, within IAI47_02905 at 597.081 kb on + strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.091 kb on + strand at 597.091 kb on + strand at 597.091 kb on + strand at 597.092 kb on - strand at 597.096 kb on - strand at 597.097 kb on + strand at 597.097 kb on + strand at 597.097 kb on + strand at 597.097 kb on + strand at 597.098 kb on - strand at 597.098 kb on - strand at 597.098 kb on - strand at 597.140 kb on - strand at 597.140 kb on - strand at 597.140 kb on - strand at 597.140 kb on - strand at 597.143 kb on - strand at 597.143 kb on - strand at 597.143 kb on - strand at 597.154 kb on - strand at 597.154 kb on - strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.162 kb on - strand at 597.192 kb on + strand at 597.192 kb on + strand at 597.193 kb on - strand at 597.193 kb on - strand at 597.242 kb on + strand at 597.264 kb on + strand at 597.264 kb on + strand at 597.264 kb on + strand at 597.264 kb on + strand at 597.265 kb on - strand at 597.265 kb on - strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.336 kb on - strand at 597.336 kb on - strand at 597.336 kb on - strand at 597.372 kb on - strand at 597.461 kb on + strand at 597.461 kb on + strand at 597.462 kb on - strand at 597.462 kb on - strand at 597.475 kb on + strand at 597.475 kb on + strand at 597.476 kb on - strand at 597.603 kb on + strand at 597.604 kb on - strand at 597.604 kb on - strand at 597.604 kb on - strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.655 kb on + strand at 597.656 kb on - strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.678 kb on - strand at 597.686 kb on + strand at 597.726 kb on + strand at 597.727 kb on - strand at 597.727 kb on - strand at 597.727 kb on - strand at 597.753 kb on - strand at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.797 kb on + strand, within IAI47_02910 at 597.797 kb on + strand, within IAI47_02910 at 597.798 kb on - strand, within IAI47_02910 at 597.798 kb on - strand, within IAI47_02910 at 597.798 kb on - strand, within IAI47_02910 at 597.844 kb on + strand, within IAI47_02910 at 597.889 kb on + strand, within IAI47_02910 at 597.890 kb on - strand, within IAI47_02910 at 597.920 kb on + strand, within IAI47_02910 at 597.921 kb on - strand, within IAI47_02910 at 597.921 kb on - strand, within IAI47_02910 at 597.921 kb on - strand, within IAI47_02910 at 597.942 kb on + strand, within IAI47_02910 at 597.942 kb on + strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 598.033 kb on + strand, within IAI47_02910 at 598.033 kb on + strand, within IAI47_02910 at 598.034 kb on - strand, within IAI47_02910 at 598.034 kb on - strand, within IAI47_02910 at 598.034 kb on - strand, within IAI47_02910 at 598.153 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.192 kb on + strand, within IAI47_02910 at 598.286 kb on + strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.322 kb on - strand, within IAI47_02910 at 598.355 kb on + strand, within IAI47_02910 at 598.356 kb on - strand, within IAI47_02910 at 598.356 kb on - strand, within IAI47_02910 at 598.411 kb on + strand, within IAI47_02910 at 598.411 kb on + strand, within IAI47_02910 at 598.412 kb on - strand, within IAI47_02910 at 598.455 kb on + strand, within IAI47_02910 at 598.456 kb on - strand, within IAI47_02910 at 598.456 kb on - strand, within IAI47_02910 at 598.456 kb on - strand, within IAI47_02910 at 598.478 kb on + strand, within IAI47_02910 at 598.478 kb on + strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.498 kb on - strand, within IAI47_02910 at 598.498 kb on - strand, within IAI47_02910 at 598.505 kb on + strand, within IAI47_02910 at 598.505 kb on + strand, within IAI47_02910 at 598.506 kb on - strand, within IAI47_02910 at 598.545 kb on - strand, within IAI47_02910 at 598.545 kb on - strand, within IAI47_02910 at 598.636 kb on + strand, within IAI47_02910 at 598.636 kb on + strand, within IAI47_02910 at 598.636 kb on + strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.639 kb on + strand, within IAI47_02910 at 598.639 kb on + strand, within IAI47_02910 at 598.640 kb on - strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.665 kb on - strand, within IAI47_02910 at 598.692 kb on + strand, within IAI47_02910 at 598.692 kb on + strand, within IAI47_02910 at 598.874 kb on + strand, within IAI47_02910 at 598.874 kb on + strand, within IAI47_02910 at 598.874 kb on + strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.889 kb on + strand, within IAI47_02910 at 598.889 kb on + strand, within IAI47_02910 at 598.889 kb on + strand, within IAI47_02910 at 598.890 kb on - strand, within IAI47_02910 at 598.965 kb on + strand at 598.965 kb on + strand at 599.009 kb on + strand at 599.048 kb on + strand at 599.049 kb on - strand at 599.109 kb on + strand at 599.109 kb on + strand at 599.109 kb on + strand at 599.109 kb on + strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.127 kb on + strand at 599.242 kb on + strand, within IAI47_02915 at 599.242 kb on + strand, within IAI47_02915 at 599.243 kb on - strand, within IAI47_02915 at 599.243 kb on - strand, within IAI47_02915 at 599.352 kb on + strand, within IAI47_02915 at 599.497 kb on + strand, within IAI47_02915 at 599.498 kb on - strand, within IAI47_02915 at 599.498 kb on - strand, within IAI47_02915 at 599.563 kb on - strand, within IAI47_02915 at 599.563 kb on - strand, within IAI47_02915 at 599.596 kb on + strand, within IAI47_02915 at 599.628 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.661 kb on + strand, within IAI47_02915 at 599.662 kb on - strand, within IAI47_02915 at 599.662 kb on - strand, within IAI47_02915 at 599.731 kb on + strand, within IAI47_02915 at 599.731 kb on + strand, within IAI47_02915 at 599.732 kb on - strand, within IAI47_02915 at 599.732 kb on - strand, within IAI47_02915 at 599.744 kb on - strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.765 kb on - strand, within IAI47_02915 at 599.767 kb on + strand, within IAI47_02915 at 599.767 kb on + strand, within IAI47_02915 at 599.767 kb on + strand, within IAI47_02915 at 599.768 kb on - strand, within IAI47_02915 at 599.863 kb on + strand, within IAI47_02915 at 599.863 kb on + strand, within IAI47_02915 at 599.864 kb on - strand, within IAI47_02915 at 599.864 kb on - strand, within IAI47_02915 at 599.864 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.901 kb on + strand, within IAI47_02915 at 599.901 kb on + strand, within IAI47_02915 at 599.902 kb on - strand, within IAI47_02915 at 599.988 kb on + strand, within IAI47_02915
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 596,620 - IAI47_02905 0.54 -2.6 596,620 - IAI47_02905 0.54 -0.1 596,620 - IAI47_02905 0.54 +1.0 596,620 - IAI47_02905 0.54 +0.2 596,667 + IAI47_02905 0.58 -0.7 596,667 + IAI47_02905 0.58 -1.5 596,719 + IAI47_02905 0.62 +2.3 596,719 + IAI47_02905 0.62 +0.4 596,719 + IAI47_02905 0.62 +0.8 596,719 + IAI47_02905 0.62 +0.6 596,719 + IAI47_02905 0.62 -2.4 596,719 + IAI47_02905 0.62 +0.8 596,719 + IAI47_02905 0.62 +0.2 596,720 - IAI47_02905 0.62 -2.2 596,720 - IAI47_02905 0.62 -0.6 596,720 - IAI47_02905 0.62 -0.5 596,720 - IAI47_02905 0.62 -0.1 596,720 - IAI47_02905 0.62 -1.1 596,789 - IAI47_02905 0.67 +1.5 596,789 - IAI47_02905 0.67 -1.6 596,789 - IAI47_02905 0.67 +1.4 596,789 - IAI47_02905 0.67 -3.2 596,804 - IAI47_02905 0.68 -0.7 596,804 - IAI47_02905 0.68 +0.6 596,808 + IAI47_02905 0.68 +1.8 596,808 + IAI47_02905 0.68 +1.1 596,809 - IAI47_02905 0.68 +1.2 596,809 - IAI47_02905 0.68 +0.5 596,813 + IAI47_02905 0.69 -1.8 596,814 - IAI47_02905 0.69 -0.6 596,851 + IAI47_02905 0.72 +0.3 596,851 + IAI47_02905 0.72 -0.4 596,851 + IAI47_02905 0.72 +0.2 596,851 + IAI47_02905 0.72 +0.2 597,021 + IAI47_02905 0.85 -0.5 597,022 - IAI47_02905 0.85 -2.0 597,022 - IAI47_02905 0.85 +0.3 597,046 + IAI47_02905 0.87 -0.2 597,046 + IAI47_02905 0.87 -0.3 597,046 + IAI47_02905 0.87 -0.8 597,046 + IAI47_02905 0.87 +0.8 597,046 + IAI47_02905 0.87 +0.5 597,047 - IAI47_02905 0.87 -1.9 597,047 - IAI47_02905 0.87 -1.0 597,047 - IAI47_02905 0.87 +0.1 597,047 - IAI47_02905 0.87 -0.9 597,047 - IAI47_02905 0.87 -0.3 597,048 + IAI47_02905 0.87 -1.1 597,048 + IAI47_02905 0.87 -0.7 597,048 + IAI47_02905 0.87 +0.2 597,048 + IAI47_02905 0.87 +0.3 597,049 - IAI47_02905 0.87 +1.5 597,049 - IAI47_02905 0.87 -1.3 597,049 - IAI47_02905 0.87 +0.3 597,061 - IAI47_02905 0.88 -1.3 597,061 - IAI47_02905 0.88 -0.5 597,075 + IAI47_02905 0.89 +0.1 597,075 + IAI47_02905 0.89 -0.3 597,075 + IAI47_02905 0.89 +0.6 597,075 + IAI47_02905 0.89 -0.4 597,075 + IAI47_02905 0.89 -0.8 597,075 + IAI47_02905 0.89 -0.6 597,075 + IAI47_02905 0.89 -0.7 597,075 + IAI47_02905 0.89 -0.2 597,075 + IAI47_02905 0.89 +0.1 597,076 - IAI47_02905 0.89 +0.4 597,076 - IAI47_02905 0.89 -0.8 597,076 - IAI47_02905 0.89 -0.6 597,076 - IAI47_02905 0.89 +0.7 597,076 - IAI47_02905 0.89 +2.1 597,076 - IAI47_02905 0.89 +1.0 597,076 - IAI47_02905 0.89 +2.5 597,076 - IAI47_02905 0.89 +0.1 597,076 - IAI47_02905 0.89 -1.1 597,076 - IAI47_02905 0.89 +0.3 597,076 - IAI47_02905 0.89 +1.5 597,076 - IAI47_02905 0.89 +2.8 597,076 - IAI47_02905 0.89 -0.2 597,076 - IAI47_02905 0.89 -0.8 597,076 - IAI47_02905 0.89 +1.0 597,081 + IAI47_02905 0.89 +1.1 597,081 + IAI47_02905 0.89 -1.5 597,081 + IAI47_02905 0.89 -1.2 597,082 - IAI47_02905 0.89 +0.2 597,082 - IAI47_02905 0.89 -0.6 597,082 - IAI47_02905 0.89 +1.0 597,082 - IAI47_02905 0.89 -1.4 597,091 + +0.2 597,091 + -1.1 597,091 + +0.5 597,092 - -1.6 597,096 - +0.8 597,097 + +3.3 597,097 + -0.1 597,097 + -1.9 597,097 + +0.3 597,098 - +0.4 597,098 - -1.2 597,098 - +0.2 597,140 - -1.2 597,140 - +1.0 597,140 - -0.8 597,140 - +0.4 597,143 - -0.0 597,143 - -0.8 597,143 - +0.2 597,154 - +1.6 597,154 - 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Or see this region's nucleotide sequence