Strain Fitness in Pantoea sp. MT58 around IAI47_00015

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,039	+				+0.8
2,039	+				+0.7
2,039	+				+0.1
2,039	+				-1.7
2,039	+				-0.8
2,040	-				-0.4
2,040	-				-1.4
2,040	-				-0.2
2,040	-				+0.8
2,040	-				+0.7
2,040	-				+3.5
2,040	-				+0.4
2,040	-				-0.9
2,048	+				-1.1
2,048	+				+2.1
2,048	+				+0.3
2,048	+				-0.2
2,048	+				-0.0
2,048	+				+0.9
2,048	+				+1.3
2,048	+				-1.2
2,048	+				+0.4
2,048	+				+0.8
2,048	+				-0.5
2,048	+				+0.1
2,048	+				+2.4
2,049	-				+0.1
2,049	-				-2.5
2,049	-				-0.3
2,049	-				+0.1
2,049	-				+0.4
2,049	-				+2.3
2,049	-				-0.3
2,049	-				-0.6
2,049	-				+1.7
2,050	+				-1.3
2,050	+				-0.0
2,051	-				+0.0
2,051	-				-0.4
2,063	+				-1.6
2,063	+				+0.3
2,063	+				-2.0
2,063	+				-1.2
2,063	+				-1.0
2,063	+				+0.3
2,064	-				-1.2
2,064	-				-1.4
2,070	+				-0.5
2,070	+				-2.0
2,070	+				+0.4
2,070	+				-0.3
2,070	+				-1.2
2,070	+				-0.9
2,070	+				-0.4
2,070	+				+0.2
2,070	+				-0.2
2,070	+				-0.9
2,070	+				-0.4
2,070	+				-0.7
2,070	+				-2.0
2,070	+				-1.2
2,070	+				-0.3
2,070	+				+0.9
2,070	+				+1.4
2,070	+				-0.6
2,070	+				+0.1
2,070	+				-1.0
2,070	+				-0.8
2,070	+				+1.1
2,070	+				+2.4
2,071	-				-0.8
2,071	-				-0.0
2,071	-				+1.6
2,071	-				-0.5
2,071	-				+0.1
2,071	-				+0.4
2,071	-				-1.7
2,071	-				+0.7
2,071	-				-0.3
2,071	-				-1.5
2,071	-				-0.6
2,071	-				+1.6
2,071	-				-0.2
2,071	-				+2.0
2,071	-				+1.3
2,071	-				+0.1
2,071	-				-0.4
2,071	-				-2.7
2,105	+				+0.3
2,105	+				+1.1
2,105	+				-0.4
2,106	-				-2.0
2,106	-				-0.5
2,106	-				-1.3
2,106	-				+0.2
2,113	+				+0.2
2,114	-				-0.8
2,149	+				-0.9
2,150	-				+0.6
2,236	+				+0.3
2,236	+				-1.3
2,236	+				+1.0
2,237	-				+0.7
2,237	-				+0.4
2,269	+				-1.7
2,282	+				-0.1
2,282	+				+0.2
2,283	-				+1.1
2,283	-				-0.7
2,283	-				-0.3
2,283	-				+1.3
2,297	+				+0.6
2,298	-				-0.5
2,301	-				-0.7
2,301	-				-0.5
2,380	+		IAI47_00015	0.11	-2.2
2,381	-		IAI47_00015	0.11	-1.8
2,381	-		IAI47_00015	0.11	-1.6
2,381	-		IAI47_00015	0.11	-0.8
2,381	-		IAI47_00015	0.11	-1.7
2,393	+		IAI47_00015	0.12	+0.8
2,393	+		IAI47_00015	0.12	-0.7
2,394	-		IAI47_00015	0.12	+0.5
2,394	-		IAI47_00015	0.12	-2.2
2,394	-		IAI47_00015	0.12	-1.5
2,394	-		IAI47_00015	0.12	+0.2
2,394	-		IAI47_00015	0.12	-0.7
2,549	+		IAI47_00015	0.26	-0.3
2,549	+		IAI47_00015	0.26	-2.1
2,549	+		IAI47_00015	0.26	-0.9
2,570	+		IAI47_00015	0.28	-1.2
2,570	+		IAI47_00015	0.28	-1.0
2,570	+		IAI47_00015	0.28	-0.5
2,570	+		IAI47_00015	0.28	-0.1
2,570	+		IAI47_00015	0.28	-1.3
2,570	+		IAI47_00015	0.28	+0.3
2,571	-		IAI47_00015	0.28	-0.9
2,571	-		IAI47_00015	0.28	-0.0
2,608	+		IAI47_00015	0.32	-1.7
2,627	+		IAI47_00015	0.34	+0.3
2,627	+		IAI47_00015	0.34	+0.2
2,628	-		IAI47_00015	0.34	-0.0
2,628	-		IAI47_00015	0.34	+0.3
2,652	+		IAI47_00015	0.36	+0.2
2,653	-		IAI47_00015	0.36	-1.9
2,664	+		IAI47_00015	0.37	+0.8
2,664	+		IAI47_00015	0.37	-1.6
2,664	+		IAI47_00015	0.37	-0.2
2,664	+		IAI47_00015	0.37	+0.6
2,664	+		IAI47_00015	0.37	+0.6
2,664	+		IAI47_00015	0.37	+0.3
2,664	+		IAI47_00015	0.37	+0.5
2,665	-		IAI47_00015	0.37	-0.9
2,665	-		IAI47_00015	0.37	+0.6
2,688	-		IAI47_00015	0.39	-1.6
2,720	+		IAI47_00015	0.42	-2.0
2,720	+		IAI47_00015	0.42	-1.3
2,721	-		IAI47_00015	0.42	-0.5
2,721	-		IAI47_00015	0.42	-3.4
2,721	-		IAI47_00015	0.42	-0.9
2,721	-		IAI47_00015	0.42	-0.3
2,721	-		IAI47_00015	0.42	-1.6
2,721	-		IAI47_00015	0.42	+1.7
2,735	+		IAI47_00015	0.44	-0.7
2,736	-		IAI47_00015	0.44	-1.0
2,736	-		IAI47_00015	0.44	-0.7
2,772	+		IAI47_00015	0.47	-0.7
2,773	-		IAI47_00015	0.47	-0.3
2,844	+		IAI47_00015	0.54	+1.5
2,844	+		IAI47_00015	0.54	-0.4
2,844	+		IAI47_00015	0.54	-1.2
2,845	-		IAI47_00015	0.54	-0.3
2,845	-		IAI47_00015	0.54	-0.2
2,857	+		IAI47_00015	0.55	-0.6
2,858	-		IAI47_00015	0.55	-0.0
2,882	+		IAI47_00015	0.57	+0.5
2,949	+		IAI47_00015	0.63	+0.1
2,950	-		IAI47_00015	0.63	+1.0
2,970	-		IAI47_00015	0.65	+0.1
2,970	-		IAI47_00015	0.65	-0.7
2,970	-		IAI47_00015	0.65	-0.1
2,997	+		IAI47_00015	0.68	+0.4
2,997	+		IAI47_00015	0.68	-1.0
2,997	+		IAI47_00015	0.68	-0.3
2,997	+		IAI47_00015	0.68	-1.2
2,997	+		IAI47_00015	0.68	-0.8
2,997	+		IAI47_00015	0.68	-0.4
2,998	-		IAI47_00015	0.68	-1.4
2,998	-		IAI47_00015	0.68	-0.3
2,998	-		IAI47_00015	0.68	+0.2
2,998	-		IAI47_00015	0.68	-0.2
2,998	-		IAI47_00015	0.68	-1.0
2,998	-		IAI47_00015	0.68	+1.4
2,998	-		IAI47_00015	0.68	-0.2
3,000	-		IAI47_00015	0.68	-0.6
3,017	+		IAI47_00015	0.70	-1.9
3,064	+		IAI47_00015	0.74	+0.1
3,064	+		IAI47_00015	0.74	+0.8
3,064	+		IAI47_00015	0.74	-3.2
3,065	-		IAI47_00015	0.74	-0.5
3,152	+		IAI47_00015	0.82	+1.3
3,152	+		IAI47_00015	0.82	-1.4
3,152	+		IAI47_00015	0.82	-1.7
3,152	+		IAI47_00015	0.82	-1.3
3,152	+		IAI47_00015	0.82	+0.5
3,152	+		IAI47_00015	0.82	-1.0
3,152	+		IAI47_00015	0.82	+1.4
3,153	-		IAI47_00015	0.82	-0.3
3,153	-		IAI47_00015	0.82	-1.6
3,153	-		IAI47_00015	0.82	-0.3
3,153	-		IAI47_00015	0.82	+0.5
3,153	-		IAI47_00015	0.82	-0.8
3,156	+		IAI47_00015	0.82	+1.0
3,156	+				+0.5
3,156	+		IAI47_00015	0.82	+0.6
3,157	-		IAI47_00015	0.82	-1.0
3,157	-		IAI47_00015	0.82	+0.3
3,157	-		IAI47_00015	0.82	+0.9
3,157	-		IAI47_00015	0.82	-0.6
3,157	-		IAI47_00015	0.82	+0.8
3,157	-		IAI47_00015	0.82	-1.8
3,221	-		IAI47_00015	0.88	-1.1
3,254	+				+0.0
3,271	+				+1.3
3,271	+				+1.3
3,271	+				-1.2
3,271	+				-2.2
3,272	-				-1.4
3,272	-				-0.9
3,272	-				+1.1
3,272	-				-1.8
3,320	+				+0.0
3,320	+				+2.4