Strain Fitness in Pantoea sp. MT58 around IAI47_18305

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,894,057	+		IAI47_18300	0.20	-1.2
3,894,057	+		IAI47_18300	0.20	-0.3
3,894,058	-		IAI47_18300	0.20	-0.7
3,894,066	-		IAI47_18300	0.21	+0.9
3,894,082	+		IAI47_18300	0.23	+0.2
3,894,082	+		IAI47_18300	0.23	+0.0
3,894,082	+		IAI47_18300	0.23	+0.6
3,894,082	+		IAI47_18300	0.23	+1.1
3,894,082	+		IAI47_18300	0.23	+2.1
3,894,082	+		IAI47_18300	0.23	+0.6
3,894,082	+		IAI47_18300	0.23	+1.4
3,894,082	+		IAI47_18300	0.23	+0.0
3,894,083	-		IAI47_18300	0.23	+0.3
3,894,083	-		IAI47_18300	0.23	+1.1
3,894,083	-		IAI47_18300	0.23	-2.3
3,894,083	-		IAI47_18300	0.23	+2.7
3,894,083	-		IAI47_18300	0.23	+1.2
3,894,083	-		IAI47_18300	0.23	+1.1
3,894,083	-		IAI47_18300	0.23	+0.3
3,894,083	-		IAI47_18300	0.23	-1.0
3,894,083	-		IAI47_18300	0.23	+0.4
3,894,086	+		IAI47_18300	0.24	+0.8
3,894,086	+		IAI47_18300	0.24	-1.5
3,894,086	+		IAI47_18300	0.24	+0.2
3,894,086	+		IAI47_18300	0.24	-1.0
3,894,086	+		IAI47_18300	0.24	-0.7
3,894,086	+		IAI47_18300	0.24	+1.5
3,894,086	+		IAI47_18300	0.24	-1.8
3,894,086	+		IAI47_18300	0.24	+1.8
3,894,086	+		IAI47_18300	0.24	+1.3
3,894,086	+		IAI47_18300	0.24	-0.2
3,894,086	+		IAI47_18300	0.24	-0.6
3,894,087	-		IAI47_18300	0.24	-0.9
3,894,087	-		IAI47_18300	0.24	-0.2
3,894,087	-		IAI47_18300	0.24	+0.2
3,894,087	-		IAI47_18300	0.24	-1.5
3,894,087	-		IAI47_18300	0.24	+0.1
3,894,087	-		IAI47_18300	0.24	-0.2
3,894,087	-		IAI47_18300	0.24	+0.5
3,894,087	-		IAI47_18300	0.24	+0.9
3,894,087	-		IAI47_18300	0.24	-1.7
3,894,087	-		IAI47_18300	0.24	+0.7
3,894,087	-		IAI47_18300	0.24	+0.6
3,894,087	-		IAI47_18300	0.24	+1.0
3,894,087	-		IAI47_18300	0.24	-0.4
3,894,087	-		IAI47_18300	0.24	+1.0
3,894,087	-		IAI47_18300	0.24	+1.6
3,894,087	-		IAI47_18300	0.24	+0.7
3,894,087	-		IAI47_18300	0.24	+1.1
3,894,090	+		IAI47_18300	0.24	+0.1
3,894,090	+		IAI47_18300	0.24	+0.8
3,894,090	+		IAI47_18300	0.24	-0.6
3,894,090	+		IAI47_18300	0.24	-0.2
3,894,090	+		IAI47_18300	0.24	-1.4
3,894,091	-		IAI47_18300	0.25	-0.6
3,894,091	-		IAI47_18300	0.25	+0.1
3,894,091	-		IAI47_18300	0.25	+1.0
3,894,091	-		IAI47_18300	0.25	-0.2
3,894,126	-		IAI47_18300	0.29	+2.4
3,894,161	-		IAI47_18300	0.34	-0.1
3,894,178	+		IAI47_18300	0.36	+2.1
3,894,179	-		IAI47_18300	0.36	-0.1
3,894,179	-		IAI47_18300	0.36	+0.5
3,894,179	-		IAI47_18300	0.36	-1.3
3,894,179	-		IAI47_18300	0.36	+1.6
3,894,257	+		IAI47_18300	0.46	-0.6
3,894,258	-		IAI47_18300	0.46	-2.2
3,894,258	-		IAI47_18300	0.46	-0.1
3,894,258	-		IAI47_18300	0.46	-1.7
3,894,258	-		IAI47_18300	0.46	-0.2
3,894,345	+		IAI47_18300	0.58	+0.2
3,894,345	+		IAI47_18300	0.58	-1.3
3,894,345	+		IAI47_18300	0.58	-2.5
3,894,345	+		IAI47_18300	0.58	-0.7
3,894,345	+		IAI47_18300	0.58	-0.0
3,894,345	+		IAI47_18300	0.58	+0.8
3,894,346	-		IAI47_18300	0.58	+0.1
3,894,362	+		IAI47_18300	0.60	-0.3
3,894,362	+		IAI47_18300	0.60	+0.6
3,894,362	+		IAI47_18300	0.60	+0.4
3,894,362	+		IAI47_18300	0.60	-0.7
3,894,362	+		IAI47_18300	0.60	+0.4
3,894,362	+		IAI47_18300	0.60	+2.1
3,894,362	+		IAI47_18300	0.60	-0.9
3,894,362	+		IAI47_18300	0.60	+1.4
3,894,363	-		IAI47_18300	0.60	-1.4
3,894,363	-		IAI47_18300	0.60	-0.3
3,894,363	-		IAI47_18300	0.60	+0.7
3,894,363	-		IAI47_18300	0.60	-0.9
3,894,363	-		IAI47_18300	0.60	+1.4
3,894,363	-		IAI47_18300	0.60	+1.2
3,894,363	-		IAI47_18300	0.60	+0.7
3,894,363	-		IAI47_18300	0.60	+1.5
3,894,363	-		IAI47_18300	0.60	+0.6
3,894,363	-		IAI47_18300	0.60	+1.5
3,894,363	-		IAI47_18300	0.60	+0.3
3,894,363	-		IAI47_18300	0.60	+0.6
3,894,363	-		IAI47_18300	0.60	+1.3
3,894,363	-		IAI47_18300	0.60	-0.7
3,894,363	-		IAI47_18300	0.60	+0.7
3,894,363	-		IAI47_18300	0.60	-0.3
3,894,363	-		IAI47_18300	0.60	+0.3
3,894,462	-		IAI47_18300	0.73	-0.8
3,894,516	-		IAI47_18300	0.80	+0.2
3,894,516	-		IAI47_18300	0.80	-0.0
3,894,681	+				+0.1
3,894,681	+				+0.2
3,894,682	-				-0.3
3,894,682	-				+2.0
3,894,704	+				+1.2
3,894,704	+				+1.3
3,894,705	-				+0.6
3,894,705	-				-1.0
3,894,705	-				-1.0
3,894,725	+				-1.2
3,894,726	-				-1.5
3,894,726	-				+0.6
3,894,789	-				-0.9
3,894,798	+				-1.6
3,894,818	+				-0.3
3,894,818	+				+0.7
3,894,819	-				+1.1
3,894,874	+				+1.4
3,894,875	-				-0.7
3,894,911	+				+1.2
3,894,911	+				-0.8
3,894,911	+				-0.3
3,894,911	+				-1.2
3,894,911	+				+1.3
3,894,911	+				+1.9
3,894,911	+				-0.1
3,894,929	+				-2.2
3,894,929	+				+0.5
3,894,929	+				+0.6
3,894,930	-				-0.9
3,894,930	-				-0.1
3,894,931	+				+0.0
3,894,931	+				-0.0
3,894,931	+				-1.4
3,894,931	+				+0.7
3,894,931	+				+0.1
3,894,931	+				-1.8
3,894,931	+				-0.2
3,894,931	+				+0.0
3,894,932	-				+1.9
3,894,932	-				-1.2
3,894,932	-				-0.3
3,894,932	-				+1.0
3,894,932	-				+1.4
3,894,932	-				+0.6
3,894,932	-				-0.1
3,894,932	-				+0.6
3,894,932	-				+0.9
3,894,935	+				+0.9
3,894,935	+				-1.8
3,894,935	+				-0.1
3,894,935	+				+0.1
3,894,935	+				-1.2
3,894,935	+				+2.1
3,894,935	+				-1.2
3,894,935	+				-0.6
3,894,935	+				-0.5
3,894,935	+				+0.1
3,894,935	+				-0.4
3,894,936	-				+0.9
3,894,936	-				+1.2
3,894,936	-				-1.5
3,894,936	-				+0.7
3,894,936	-				+0.5
3,894,936	-				-0.0
3,894,936	-				-1.1
3,894,936	-				+0.7
3,894,936	-				-0.7
3,894,968	+				+0.3
3,894,968	+				-0.8
3,894,968	+				+1.5
3,894,969	-				-1.0
3,894,969	-				+1.9
3,894,969	-				-1.2
3,894,984	+				-0.3
3,894,984	+				-1.4
3,894,984	+				+0.0
3,894,984	+				+0.9
3,894,984	+				+0.8
3,894,984	+				-0.6
3,894,984	+				-2.9
3,894,985	-				+0.8
3,894,985	-				+1.0
3,894,985	-				+1.7
3,894,985	-				+0.6
3,894,985	-				+0.8
3,894,985	-				+0.2
3,894,985	-				-0.6
3,894,987	+				-0.1
3,894,987	+				+1.2
3,894,987	+				-0.6
3,894,987	+				+3.4
3,894,987	+				+0.1
3,894,988	-				-1.2
3,894,988	-				-0.3
3,895,213	-		IAI47_18305	0.29	-0.3
3,895,240	+		IAI47_18305	0.32	-1.7
3,895,240	+		IAI47_18305	0.32	+0.2
3,895,264	+		IAI47_18305	0.35	+0.2
3,895,264	+		IAI47_18305	0.35	-1.7
3,895,265	-		IAI47_18305	0.35	+0.6
3,895,265	-		IAI47_18305	0.35	-0.5
3,895,265	-		IAI47_18305	0.35	-0.1
3,895,291	+		IAI47_18305	0.38	-1.7
3,895,291	+		IAI47_18305	0.38	+0.7
3,895,291	+		IAI47_18305	0.38	+2.7
3,895,291	+		IAI47_18305	0.38	-1.4
3,895,292	-		IAI47_18305	0.39	+0.3
3,895,292	-		IAI47_18305	0.39	-0.3
3,895,292	-		IAI47_18305	0.39	+1.7
3,895,310	+		IAI47_18305	0.41	+0.7
3,895,311	-		IAI47_18305	0.41	-1.7
3,895,329	+		IAI47_18305	0.43	+0.0
3,895,329	+		IAI47_18305	0.43	+2.0
3,895,330	-		IAI47_18305	0.43	+1.5
3,895,401	+		IAI47_18305	0.52	+0.2
3,895,467	+		IAI47_18305	0.60	+0.7
3,895,545	+		IAI47_18305	0.69	-0.9
3,895,545	+		IAI47_18305	0.69	-0.9
3,895,545	+		IAI47_18305	0.69	+0.4
3,895,545	+		IAI47_18305	0.69	+1.1
3,895,545	+		IAI47_18305	0.69	+0.7
3,895,545	+		IAI47_18305	0.69	+0.6
3,895,545	+		IAI47_18305	0.69	-1.4
3,895,545	+		IAI47_18305	0.69	-0.5
3,895,545	+		IAI47_18305	0.69	+0.2
3,895,546	-		IAI47_18305	0.69	+0.3
3,895,546	-		IAI47_18305	0.69	+2.8
3,895,546	-		IAI47_18305	0.69	-0.3
3,895,546	-		IAI47_18305	0.69	-1.0
3,895,546	-		IAI47_18305	0.69	+0.9
3,895,546	-		IAI47_18305	0.69	+1.6
3,895,546	-		IAI47_18305	0.69	-0.1
3,895,546	-		IAI47_18305	0.69	-0.0
3,895,546	-		IAI47_18305	0.69	+0.4
3,895,551	+		IAI47_18305	0.70	-0.7
3,895,551	+		IAI47_18305	0.70	-1.1
3,895,551	+		IAI47_18305	0.70	-0.4
3,895,551	+		IAI47_18305	0.70	-0.1
3,895,551	+		IAI47_18305	0.70	+0.9
3,895,552	-		IAI47_18305	0.70	+1.3
3,895,552	-		IAI47_18305	0.70	+3.2
3,895,581	-		IAI47_18305	0.73	+0.9
3,895,581	-		IAI47_18305	0.73	-0.1
3,895,588	+		IAI47_18305	0.74	+1.1
3,895,588	+		IAI47_18305	0.74	+0.1
3,895,588	+		IAI47_18305	0.74	-0.8
3,895,589	-		IAI47_18305	0.74	-0.5
3,895,589	-		IAI47_18305	0.74	+0.3
3,895,589	-		IAI47_18305	0.74	+2.1
3,895,589	-		IAI47_18305	0.74	-0.4
3,895,589	-		IAI47_18305	0.74	-1.1
3,895,589	-		IAI47_18305	0.74	-0.0
3,895,589	-		IAI47_18305	0.74	+0.3
3,895,589	-		IAI47_18305	0.74	+0.0
3,895,704	+		IAI47_18305	0.88	-1.1
3,895,704	+		IAI47_18305	0.88	-0.6
3,895,705	-		IAI47_18305	0.88	-1.6
3,895,714	+		IAI47_18305	0.89	+2.3
3,895,726	+				+1.2
3,895,726	+				-1.2
3,895,726	+				+0.7
3,895,727	-				+2.1
3,895,727	-				+0.3
3,895,727	-				-0.9
3,895,801	+				+0.7
3,895,802	-				+0.3
3,895,836	+				-0.7
3,895,836	+				+1.6
3,895,837	-				+0.6
3,895,855	+				+0.4
3,895,855	+				+0.9
3,895,855	+				+0.5
3,895,855	+				-0.3
3,895,856	-				+1.6
3,895,856	-				-1.5
3,896,024	+				-0.5
3,896,024	+				-0.2
3,896,024	+				+0.6
3,896,025	-				+1.3
3,896,025	-				+0.6
3,896,025	-				-0.3
3,896,025	-				-1.3
3,896,045	+				+1.5
3,896,045	+				+0.9
3,896,045	+				+0.1
3,896,046	-				+0.5
3,896,046	-				+1.7
3,896,046	-				+0.5
3,896,050	+				+2.7
3,896,050	+				+0.2
3,896,050	+				-0.7
3,896,050	+				-0.2
3,896,050	+				-0.2
3,896,050	+				+1.0
3,896,050	+				+0.1
3,896,051	-				-0.2
3,896,051	-				-0.9
3,896,051	-				+1.0
3,896,051	-				-1.2
3,896,051	-				-0.6
3,896,171	+		IAI47_18310	0.14	+1.1
3,896,171	+		IAI47_18310	0.14	+1.1
3,896,172	-		IAI47_18310	0.14	-0.2
3,896,172	-		IAI47_18310	0.14	+0.4
3,896,191	+		IAI47_18310	0.15	+0.6
3,896,191	+		IAI47_18310	0.15	-0.8
3,896,191	+		IAI47_18310	0.15	+0.3
3,896,192	-		IAI47_18310	0.15	+0.5
3,896,198	+		IAI47_18310	0.15	+1.6
3,896,198	+		IAI47_18310	0.15	+0.5
3,896,198	+		IAI47_18310	0.15	-2.1
3,896,198	+		IAI47_18310	0.15	+1.9
3,896,198	+		IAI47_18310	0.15	+1.1
3,896,198	+		IAI47_18310	0.15	+0.1
3,896,198	+		IAI47_18310	0.15	-2.0
3,896,198	+		IAI47_18310	0.15	+0.1
3,896,198	+		IAI47_18310	0.15	+1.0
3,896,199	-		IAI47_18310	0.15	-2.9
3,896,199	-		IAI47_18310	0.15	+1.6
3,896,199	-		IAI47_18310	0.15	-0.3
3,896,199	-		IAI47_18310	0.15	-1.4
3,896,199	-		IAI47_18310	0.15	-0.7
3,896,199	-		IAI47_18310	0.15	+0.2
3,896,199	-		IAI47_18310	0.15	+1.3
3,896,199	-		IAI47_18310	0.15	-0.2
3,896,199	-		IAI47_18310	0.15	-0.4
3,896,199	-		IAI47_18310	0.15	-2.7
3,896,199	-		IAI47_18310	0.15	+0.3
3,896,199	-		IAI47_18310	0.15	+0.2
3,896,199	-		IAI47_18310	0.15	-0.8
3,896,199	-		IAI47_18310	0.15	-0.4
3,896,272	+		IAI47_18310	0.18	-0.8
3,896,272	+		IAI47_18310	0.18	+1.6
3,896,273	-		IAI47_18310	0.18	-1.4
3,896,337	-		IAI47_18310	0.21	+0.1
3,896,479	-		IAI47_18310	0.28	-0.5
3,896,506	+		IAI47_18310	0.29	-0.7
3,896,506	+		IAI47_18310	0.29	+0.1
3,896,506	+		IAI47_18310	0.29	-1.4
3,896,507	-		IAI47_18310	0.29	+2.0
3,896,556	-		IAI47_18310	0.31	-1.2
3,896,556	-		IAI47_18310	0.31	+1.2
3,896,556	-		IAI47_18310	0.31	+0.0
3,896,556	-		IAI47_18310	0.31	+0.2
3,896,556	-		IAI47_18310	0.31	-0.0
3,896,587	+		IAI47_18310	0.32	+1.7
3,896,587	+		IAI47_18310	0.32	+1.6
3,896,587	+		IAI47_18310	0.32	-0.1
3,896,587	+		IAI47_18310	0.32	+0.7
3,896,587	+		IAI47_18310	0.32	-0.6
3,896,587	+		IAI47_18310	0.32	+0.6
3,896,587	+		IAI47_18310	0.32	+0.0
3,896,587	+		IAI47_18310	0.32	-1.2
3,896,587	+		IAI47_18310	0.32	-0.6
3,896,588	-		IAI47_18310	0.32	-0.3
3,896,588	-		IAI47_18310	0.32	-0.2
3,896,588	-		IAI47_18310	0.32	+0.4
3,896,588	-		IAI47_18310	0.32	-0.5
3,896,588	-		IAI47_18310	0.32	-0.1
3,896,588	-		IAI47_18310	0.32	+0.2
3,896,588	-		IAI47_18310	0.32	-0.2
3,896,644	+		IAI47_18310	0.35	-0.3
3,896,644	+		IAI47_18310	0.35	-0.1
3,896,644	+		IAI47_18310	0.35	+0.1
3,896,644	+		IAI47_18310	0.35	+0.5
3,896,645	-		IAI47_18310	0.35	-0.9
3,896,645	-		IAI47_18310	0.35	+1.1
3,896,645	-		IAI47_18310	0.35	-0.6
3,896,645	-		IAI47_18310	0.35	+1.1
3,896,654	+		IAI47_18310	0.35	-0.3
3,896,654	+		IAI47_18310	0.35	-0.2
3,896,660	+		IAI47_18310	0.35	+1.2
3,896,660	+		IAI47_18310	0.35	-0.6
3,896,660	+		IAI47_18310	0.35	+0.3
3,896,660	+		IAI47_18310	0.35	-0.8
3,896,661	-		IAI47_18310	0.36	-0.6
3,896,661	-		IAI47_18310	0.36	+0.4
3,896,661	-		IAI47_18310	0.36	+0.7
3,896,726	+		IAI47_18310	0.38	-0.2
3,896,726	+		IAI47_18310	0.38	-1.0
3,896,726	+		IAI47_18310	0.38	-0.2
3,896,726	+		IAI47_18310	0.38	+1.2
3,896,781	-		IAI47_18310	0.41	+0.6