Strain Fitness in Pantoea sp. MT58 around IAI47_18065

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,841,708	-		IAI47_18055	0.45	-2.2
3,841,714	-		IAI47_18055	0.47	-1.4
3,841,714	-		IAI47_18055	0.47	-4.6
3,841,732	+		IAI47_18055	0.54	-3.4
3,841,733	-		IAI47_18055	0.54	-3.4
3,841,733	-		IAI47_18055	0.54	-3.6
3,841,733	-		IAI47_18055	0.54	-3.2
3,841,733	-		IAI47_18055	0.54	-3.2
3,841,733	-		IAI47_18055	0.54	-3.9
3,841,733	-		IAI47_18055	0.54	-2.2
3,841,776	+		IAI47_18055	0.70	-3.6
3,841,776	+		IAI47_18055	0.70	-1.0
3,841,776	+		IAI47_18055	0.70	-2.5
3,841,777	-		IAI47_18055	0.70	-0.7
3,841,806	+		IAI47_18055	0.81	-2.4
3,841,857	+				-3.9
3,841,857	+				-2.2
3,841,857	+				-2.2
3,841,857	+				-1.9
3,841,857	+				-0.9
3,841,857	+				-3.3
3,841,857	+				-4.0
3,841,858	-				-3.4
3,841,858	-				-4.2
3,841,858	-				-2.6
3,841,858	-				-2.4
3,841,858	-				-0.7
3,841,858	-				-2.5
3,841,858	-				-4.0
3,841,858	-				-4.3
3,841,858	-				-2.3
3,841,858	-				-0.8
3,841,862	+				-2.1
3,841,863	-				-2.4
3,841,863	-				-2.3
3,841,868	+				-1.9
3,841,868	+				-1.0
3,841,869	-				-1.8
3,841,876	-				-0.9
3,841,876	-				-1.8
3,841,876	-				-2.3
3,841,876	-				-2.3
3,841,876	-				-3.2
3,841,876	-				-2.0
3,841,880	-				-1.9
3,841,889	+				-2.2
3,841,890	-				-2.3
3,841,890	-				-2.8
3,841,890	-				-1.2
3,841,916	+				-2.4
3,841,917	-				-1.7
3,841,917	-				-1.8
3,841,975	+				-1.3
3,841,975	+				-2.6
3,841,976	-				-2.8
3,841,976	-				+0.1
3,842,039	+				-0.3
3,842,047	+				-1.4
3,842,047	+				-1.1
3,842,047	+				-1.3
3,842,048	-				-0.9
3,842,063	+				+0.3
3,842,064	-				-2.2
3,842,075	+				-0.8
3,842,111	+		IAI47_18060	0.11	-1.7
3,842,112	-		IAI47_18060	0.11	-0.4
3,842,112	-		IAI47_18060	0.11	-1.9
3,842,112	-		IAI47_18060	0.11	-0.2
3,842,189	+		IAI47_18060	0.24	+0.4
3,842,190	-		IAI47_18060	0.24	-0.2
3,842,252	+		IAI47_18060	0.35	-1.5
3,842,252	+		IAI47_18060	0.35	+0.5
3,842,252	+		IAI47_18060	0.35	+0.9
3,842,252	+		IAI47_18060	0.35	+1.0
3,842,252	+		IAI47_18060	0.35	-2.1
3,842,253	-		IAI47_18060	0.35	+0.8
3,842,253	-		IAI47_18060	0.35	+1.1
3,842,253	-		IAI47_18060	0.35	+0.8
3,842,253	-		IAI47_18060	0.35	+0.5
3,842,264	+		IAI47_18060	0.37	+0.3
3,842,264	+		IAI47_18060	0.37	+0.6
3,842,264	+		IAI47_18060	0.37	+0.7
3,842,265	-		IAI47_18060	0.37	+0.2
3,842,265	-		IAI47_18060	0.37	-0.5
3,842,265	-		IAI47_18060	0.37	+1.8
3,842,265	-		IAI47_18060	0.37	-0.7
3,842,337	+		IAI47_18060	0.49	-1.2
3,842,337	+		IAI47_18060	0.49	+0.2
3,842,357	+		IAI47_18060	0.53	-0.7
3,842,358	-		IAI47_18060	0.53	-0.3
3,842,375	-		IAI47_18060	0.56	+1.9
3,842,438	+		IAI47_18060	0.66	+0.1
3,842,439	-		IAI47_18060	0.66	-0.3
3,842,439	-		IAI47_18060	0.66	-1.7
3,842,494	+		IAI47_18060	0.76	-1.0
3,842,495	-		IAI47_18060	0.76	-0.8
3,842,496	+		IAI47_18060	0.76	-1.5
3,842,496	+		IAI47_18060	0.76	+1.1
3,842,496	+		IAI47_18060	0.76	-1.6
3,842,496	+		IAI47_18060	0.76	-0.4
3,842,496	+		IAI47_18060	0.76	+1.0
3,842,497	-		IAI47_18060	0.76	-1.9
3,842,497	-		IAI47_18060	0.76	+0.2
3,842,497	-		IAI47_18060	0.76	+0.2
3,842,539	+		IAI47_18060	0.83	-0.3
3,842,539	+		IAI47_18060	0.83	-0.4
3,842,540	-		IAI47_18060	0.84	+0.6
3,842,548	+		IAI47_18060	0.85	-1.5
3,842,548	+		IAI47_18060	0.85	+0.0
3,842,548	+		IAI47_18060	0.85	+0.8
3,842,548	+		IAI47_18060	0.85	+0.2
3,842,549	-		IAI47_18060	0.85	-1.2
3,842,549	-		IAI47_18060	0.85	-0.5
3,842,549	-		IAI47_18060	0.85	+1.2
3,842,549	-		IAI47_18060	0.85	+0.6
3,842,549	-		IAI47_18060	0.85	-0.2
3,842,549	-		IAI47_18060	0.85	+1.7
3,842,549	-		IAI47_18060	0.85	+0.3
3,842,573	+		IAI47_18060	0.89	-1.4
3,842,573	+		IAI47_18060	0.89	-0.8
3,842,573	+		IAI47_18060	0.89	-1.0
3,842,574	-		IAI47_18060	0.89	+0.2
3,842,579	+				-0.5
3,842,579	+				-0.4
3,842,579	+				-0.8
3,842,579	+				-0.2
3,842,580	-				+0.3
3,842,580	-				+1.0
3,842,580	-				+1.2
3,842,580	-				-1.5
3,842,636	+				-1.7
3,842,636	+				-0.3
3,842,636	+				+0.4
3,842,636	+				+1.1
3,842,636	+				-1.3
3,842,636	+				+1.0
3,842,636	+				-1.1
3,842,636	+				-0.6
3,842,636	+				-0.6
3,842,636	+				+0.4
3,842,637	-				-0.0
3,842,637	-				-0.4
3,842,637	-				+0.2
3,842,637	-				+0.8
3,842,637	-				+1.7
3,842,637	-				-1.3
3,842,637	-				+0.0
3,842,649	+				+1.9
3,842,650	-				-0.3
3,842,650	-				+0.1
3,842,650	-				+0.4
3,842,650	-				+0.2
3,842,672	+				-1.1
3,842,673	-				+1.5
3,842,673	-				-0.5
3,842,673	-				-0.6
3,842,673	-				+0.5
3,842,673	-				-1.8
3,842,701	+				+0.0
3,842,701	+				+0.8
3,842,702	-				+0.5
3,842,702	-				-1.3
3,842,792	+		IAI47_18065	0.14	+1.4
3,842,792	+		IAI47_18065	0.14	+1.1
3,842,793	-		IAI47_18065	0.14	+1.1
3,842,820	-		IAI47_18065	0.18	+0.4
3,842,820	-		IAI47_18065	0.18	-1.4
3,842,861	+		IAI47_18065	0.24	-1.9
3,842,861	+		IAI47_18065	0.24	-1.5
3,842,861	+		IAI47_18065	0.24	+0.2
3,842,861	+		IAI47_18065	0.24	-0.1
3,842,883	+		IAI47_18065	0.27	+0.8
3,843,050	+		IAI47_18065	0.52	+1.9
3,843,050	+		IAI47_18065	0.52	+0.5
3,843,051	-		IAI47_18065	0.52	+0.1
3,843,051	-		IAI47_18065	0.52	+1.1
3,843,051	-		IAI47_18065	0.52	-0.9
3,843,122	-		IAI47_18065	0.63	+0.1
3,843,151	+		IAI47_18065	0.67	+0.7
3,843,151	+		IAI47_18065	0.67	-0.9
3,843,152	-		IAI47_18065	0.68	+0.6
3,843,152	-		IAI47_18065	0.68	+1.2
3,843,180	-		IAI47_18065	0.72	+1.5
3,843,180	-		IAI47_18065	0.72	+2.2
3,843,208	+		IAI47_18065	0.76	-2.5
3,843,216	+		IAI47_18065	0.77	+0.3
3,843,216	+		IAI47_18065	0.77	+0.4
3,843,217	-		IAI47_18065	0.77	+2.7
3,843,318	+				-0.2
3,843,336	+				+0.5
3,843,336	+				-1.0
3,843,336	+				+0.8
3,843,336	+				-0.2
3,843,337	-				+0.6
3,843,368	+				-0.2
3,843,368	+				+1.0
3,843,368	+				+0.7
3,843,368	+				+0.4
3,843,368	+				+0.5
3,843,368	+				-2.2
3,843,369	-				+0.3
3,843,369	-				+3.8
3,843,369	-				+2.4
3,843,369	-				-0.4
3,843,372	+				-0.8
3,843,373	-				+0.1
3,843,373	-				+1.7
3,843,373	-				-0.6