Strain Fitness in Pantoea sp. MT58 around IAI47_16910

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,585,896	-		IAI47_16905	0.59	+0.4
3,585,896	-		IAI47_16905	0.59	-1.4
3,585,896	-		IAI47_16905	0.59	-0.2
3,585,904	+		IAI47_16905	0.59	-1.3
3,585,904	+		IAI47_16905	0.59	+0.9
3,585,904	+		IAI47_16905	0.59	-1.9
3,585,905	-		IAI47_16905	0.59	-0.4
3,585,905	-		IAI47_16905	0.59	-1.1
3,585,905	-		IAI47_16905	0.59	+0.7
3,585,905	-		IAI47_16905	0.59	+0.5
3,585,905	-		IAI47_16905	0.59	-1.2
3,585,905	-		IAI47_16905	0.59	+0.4
3,585,952	+		IAI47_16905	0.62	-0.8
3,585,952	+		IAI47_16905	0.62	+1.0
3,585,953	-		IAI47_16905	0.62	+1.8
3,585,953	-		IAI47_16905	0.62	-0.8
3,585,971	+		IAI47_16905	0.63	-1.6
3,585,971	+		IAI47_16905	0.63	-0.1
3,585,971	+		IAI47_16905	0.63	+0.9
3,585,972	-		IAI47_16905	0.63	-0.1
3,585,972	-		IAI47_16905	0.63	+0.7
3,585,994	+		IAI47_16905	0.64	-0.7
3,585,995	-		IAI47_16905	0.64	+1.7
3,586,029	-		IAI47_16905	0.66	-1.2
3,586,052	+		IAI47_16905	0.68	-1.7
3,586,052	+		IAI47_16905	0.68	-0.6
3,586,052	+		IAI47_16905	0.68	-0.3
3,586,052	+		IAI47_16905	0.68	+0.1
3,586,052	+		IAI47_16905	0.68	+0.6
3,586,052	+		IAI47_16905	0.68	-0.7
3,586,052	+		IAI47_16905	0.68	-1.3
3,586,052	+		IAI47_16905	0.68	-1.5
3,586,053	-		IAI47_16905	0.68	+0.8
3,586,053	-		IAI47_16905	0.68	-2.5
3,586,053	-		IAI47_16905	0.68	+0.3
3,586,064	+		IAI47_16905	0.68	-0.9
3,586,114	+		IAI47_16905	0.71	-1.5
3,586,166	+		IAI47_16905	0.74	-2.1
3,586,166	+		IAI47_16905	0.74	-1.7
3,586,166	+		IAI47_16905	0.74	+1.0
3,586,167	-		IAI47_16905	0.74	+0.0
3,586,167	-		IAI47_16905	0.74	+1.0
3,586,167	-		IAI47_16905	0.74	-0.6
3,586,167	-		IAI47_16905	0.74	+0.6
3,586,169	+		IAI47_16905	0.74	+2.9
3,586,169	+		IAI47_16905	0.74	-0.7
3,586,169	+		IAI47_16905	0.74	-0.1
3,586,170	-		IAI47_16905	0.74	-0.3
3,586,207	+		IAI47_16905	0.77	+1.6
3,586,208	-		IAI47_16905	0.77	+0.5
3,586,208	-		IAI47_16905	0.77	+0.3
3,586,208	-		IAI47_16905	0.77	-0.5
3,586,208	-		IAI47_16905	0.77	-0.7
3,586,208	-		IAI47_16905	0.77	-1.3
3,586,268	+		IAI47_16905	0.80	-0.5
3,586,268	+		IAI47_16905	0.80	-0.2
3,586,268	+		IAI47_16905	0.80	-1.0
3,586,269	-		IAI47_16905	0.80	-0.5
3,586,269	-		IAI47_16905	0.80	-0.2
3,586,269	-		IAI47_16905	0.80	+1.6
3,586,285	+		IAI47_16905	0.81	-0.2
3,586,295	+		IAI47_16905	0.82	-2.0
3,586,295	+		IAI47_16905	0.82	-2.6
3,586,316	+		IAI47_16905	0.83	+0.3
3,586,317	-		IAI47_16905	0.83	-0.4
3,586,367	+		IAI47_16905	0.86	-1.0
3,586,368	-		IAI47_16905	0.86	-1.4
3,586,389	-		IAI47_16905	0.87	+0.4
3,586,430	+		IAI47_16905	0.89	+0.3
3,586,431	-		IAI47_16905	0.89	-1.2
3,586,431	-		IAI47_16905	0.89	+0.6
3,586,562	+				+0.5
3,586,562	+				+0.1
3,586,575	+				+0.8
3,586,576	-				-0.2
3,586,576	-				+1.4
3,586,576	-				+0.4
3,586,594	-				+0.3
3,586,633	+				-2.1
3,586,634	-				+0.6
3,586,660	+				+0.6
3,586,660	+				+0.5
3,586,660	+				-2.7
3,586,661	-				+0.8
3,586,662	+				-1.4
3,586,662	+				+0.5
3,586,662	+				-0.9
3,586,663	-				+2.0
3,586,663	-				+0.9
3,586,663	-				+0.2
3,586,680	+				+0.7
3,586,680	+				-1.2
3,586,680	+				+0.9
3,586,681	-				-2.1
3,586,681	-				-0.0
3,586,681	-				-0.1
3,586,681	-				-0.5
3,586,681	-				+0.5
3,586,681	-				+0.7
3,586,681	-				+0.6
3,586,681	-				+0.2
3,586,682	+				+0.5
3,586,683	-				-0.6
3,586,683	-				-1.2
3,586,683	-				+0.3
3,586,698	+				+0.1
3,586,699	-				+1.2
3,586,699	-				+0.3
3,586,762	+				+1.9
3,586,762	+				-0.3
3,586,762	+				+1.3
3,586,763	-				+0.8
3,586,763	-				-0.4
3,586,763	-				-0.1
3,586,777	-				+0.0
3,586,777	-				+1.1
3,586,796	+				+0.1
3,586,796	+				-0.4
3,586,796	+				-1.4
3,586,796	+				+0.3
3,586,796	+				-0.3
3,586,796	+				+0.9
3,586,797	-				+0.8
3,586,797	-				+1.6
3,586,797	-				-0.2
3,586,797	-				+1.1
3,586,816	+				-0.1
3,586,816	+				+1.3
3,586,816	+				+2.1
3,586,816	+				-1.9
3,586,816	+				+0.3
3,586,817	-				+0.1
3,586,817	-				-0.6
3,586,817	-				-2.4
3,586,817	-				+0.7
3,586,817	-				+0.3
3,586,829	+				-0.7
3,586,830	-				+0.6
3,586,840	+				-0.0
3,586,841	-				-0.4
3,586,841	-				-0.1
3,586,860	+				-1.1
3,586,861	-				+0.1
3,586,892	+				+0.5
3,586,892	+				+0.8
3,586,893	-				+0.6
3,586,893	-				-0.3
3,586,893	-				+0.1
3,586,893	-				-0.2
3,586,897	+				+0.8
3,586,898	-				+1.0
3,586,898	-				-0.2
3,587,064	+				-0.9
3,587,067	+				+3.8
3,587,067	+				-0.2
3,587,067	+				+1.6
3,587,067	+				+0.1
3,587,067	+				+1.0
3,587,067	+				-0.5
3,587,067	+				-0.2
3,587,068	-				+0.8
3,587,068	-				-2.1
3,587,068	-				+1.3
3,587,068	-				+1.8
3,587,068	-				-0.6
3,587,068	-				-1.6
3,587,068	-				-1.1
3,587,068	-				+0.0
3,587,068	-				-0.7
3,587,068	-				-0.1
3,587,068	-				+1.1
3,587,068	-				+2.3
3,587,068	-				+0.7
3,587,068	-				+0.4
3,587,068	-				+1.6
3,587,068	-				-2.1
3,587,195	+		IAI47_16910	0.13	+1.7
3,587,195	+		IAI47_16910	0.13	+2.0
3,587,195	+		IAI47_16910	0.13	+0.5
3,587,195	+		IAI47_16910	0.13	+0.3
3,587,195	+		IAI47_16910	0.13	+1.1
3,587,196	-		IAI47_16910	0.13	-0.4
3,587,220	+		IAI47_16910	0.14	+0.1
3,587,220	+		IAI47_16910	0.14	-1.7
3,587,261	-		IAI47_16910	0.16	-0.7
3,587,300	+		IAI47_16910	0.18	-0.7
3,587,301	-		IAI47_16910	0.18	+0.3
3,587,378	+		IAI47_16910	0.21	-1.3
3,587,378	+		IAI47_16910	0.21	+0.8
3,587,379	-		IAI47_16910	0.21	+0.3
3,587,466	+		IAI47_16910	0.25	-0.9
3,587,466	+		IAI47_16910	0.25	+2.4
3,587,467	-		IAI47_16910	0.25	-0.4
3,587,467	-		IAI47_16910	0.25	-1.1
3,587,467	-		IAI47_16910	0.25	+0.2
3,587,475	-		IAI47_16910	0.26	+0.1
3,587,475	-		IAI47_16910	0.26	+0.9
3,587,580	-		IAI47_16910	0.30	-0.8
3,587,580	-		IAI47_16910	0.30	+2.7
3,587,580	-		IAI47_16910	0.30	+1.1
3,587,665	-		IAI47_16910	0.34	+0.8
3,587,748	+		IAI47_16910	0.38	+1.1
3,587,933	+		IAI47_16910	0.46	-0.1
3,587,934	-		IAI47_16910	0.46	-0.2
3,587,986	-		IAI47_16910	0.48	-1.1
3,587,986	-		IAI47_16910	0.48	+0.3
3,588,168	-		IAI47_16910	0.56	+0.6
3,588,168	-		IAI47_16910	0.56	+0.2
3,588,203	+		IAI47_16910	0.58	+1.1
3,588,204	-		IAI47_16910	0.58	-1.4
3,588,204	-		IAI47_16910	0.58	-0.3
3,588,213	+		IAI47_16910	0.58	-0.0
3,588,213	+		IAI47_16910	0.58	+0.9
3,588,216	+		IAI47_16910	0.58	+1.6
3,588,216	+		IAI47_16910	0.58	-2.3
3,588,216	+		IAI47_16910	0.58	-1.7
3,588,217	-		IAI47_16910	0.58	+0.9
3,588,217	-		IAI47_16910	0.58	+0.6
3,588,217	-		IAI47_16910	0.58	+0.1
3,588,217	-		IAI47_16910	0.58	-2.3
3,588,217	-		IAI47_16910	0.58	+3.1
3,588,260	-		IAI47_16910	0.60	-0.3
3,588,282	+		IAI47_16910	0.61	+0.0
3,588,283	-		IAI47_16910	0.61	+0.5
3,588,283	-		IAI47_16910	0.61	-0.2
3,588,335	+		IAI47_16910	0.64	+1.1
3,588,335	+		IAI47_16910	0.64	+0.4
3,588,335	+		IAI47_16910	0.64	-1.6
3,588,336	-		IAI47_16910	0.64	-0.1
3,588,336	-		IAI47_16910	0.64	-0.4
3,588,517	+		IAI47_16910	0.72	-1.9
3,588,687	+		IAI47_16910	0.79	+1.1
3,588,687	+		IAI47_16910	0.79	-1.0
3,588,687	+		IAI47_16910	0.79	+0.6
3,588,687	+		IAI47_16910	0.79	+2.3
3,588,688	-		IAI47_16910	0.79	+0.4
3,588,688	-		IAI47_16910	0.79	-0.2
3,588,688	-		IAI47_16910	0.79	-1.0
3,588,689	+		IAI47_16910	0.79	+0.1
3,588,689	+		IAI47_16910	0.79	-0.4
3,588,689	+		IAI47_16910	0.79	+0.3
3,588,689	+		IAI47_16910	0.79	+1.0
3,588,689	+		IAI47_16910	0.79	-2.1
3,588,689	+		IAI47_16910	0.79	+0.3
3,588,689	+		IAI47_16910	0.79	+2.0
3,588,689	+		IAI47_16910	0.79	+0.3
3,588,689	+		IAI47_16910	0.79	-1.9
3,588,689	+		IAI47_16910	0.79	-0.6
3,588,689	+		IAI47_16910	0.79	+1.3
3,588,689	+		IAI47_16910	0.79	-1.4
3,588,689	+		IAI47_16910	0.79	-0.4
3,588,689	+		IAI47_16910	0.79	-0.9
3,588,689	+		IAI47_16910	0.79	+1.5
3,588,689	+		IAI47_16910	0.79	-0.4
3,588,689	+		IAI47_16910	0.79	+2.1
3,588,689	+		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	+0.3
3,588,690	-		IAI47_16910	0.79	-1.2
3,588,690	-		IAI47_16910	0.79	-0.2
3,588,690	-		IAI47_16910	0.79	-1.5
3,588,690	-		IAI47_16910	0.79	-0.0
3,588,690	-		IAI47_16910	0.79	+0.5
3,588,690	-		IAI47_16910	0.79	-1.7
3,588,690	-		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	-0.6
3,588,690	-		IAI47_16910	0.79	+0.4
3,588,690	-		IAI47_16910	0.79	-0.0
3,588,690	-		IAI47_16910	0.79	-1.4
3,588,690	-		IAI47_16910	0.79	-0.2
3,588,690	-		IAI47_16910	0.79	+0.7
3,588,690	-		IAI47_16910	0.79	+2.0
3,588,690	-		IAI47_16910	0.79	+0.5
3,588,690	-		IAI47_16910	0.79	+0.2
3,588,690	-		IAI47_16910	0.79	+2.9
3,588,690	-		IAI47_16910	0.79	-0.2
3,588,690	-		IAI47_16910	0.79	-0.7
3,588,700	+		IAI47_16910	0.80	-0.2
3,588,700	+		IAI47_16910	0.80	+0.1
3,588,704	+		IAI47_16910	0.80	+0.0
3,588,704	+		IAI47_16910	0.80	+1.6
3,588,704	+		IAI47_16910	0.80	+0.7
3,588,704	+		IAI47_16910	0.80	-0.3
3,588,704	+		IAI47_16910	0.80	-0.3
3,588,704	+		IAI47_16910	0.80	+0.2
3,588,705	-		IAI47_16910	0.80	-0.4
3,588,737	+		IAI47_16910	0.81	+1.4
3,588,737	+		IAI47_16910	0.81	+0.4
3,588,737	+		IAI47_16910	0.81	+2.1
3,588,737	+		IAI47_16910	0.81	+1.8
3,588,737	+		IAI47_16910	0.81	-1.3
3,588,737	+		IAI47_16910	0.81	+0.6
3,588,737	+		IAI47_16910	0.81	-0.2
3,588,738	-		IAI47_16910	0.81	+0.2
3,588,738	-		IAI47_16910	0.81	-0.5
3,588,738	-		IAI47_16910	0.81	+0.3
3,588,738	-		IAI47_16910	0.81	+0.2
3,588,777	-		IAI47_16910	0.83	+1.1
3,588,808	-		IAI47_16910	0.84	+0.0
3,588,834	-		IAI47_16910	0.85	-0.3
3,589,025	+				-0.2
3,589,202	+				+0.4
3,589,202	+				-0.3
3,589,203	-				-2.7
3,589,203	-				-1.3
3,589,203	-				-1.0
3,589,203	-				+0.0
3,589,203	-				+0.3
3,589,203	-				-0.4
3,589,203	-				+1.2
3,589,203	-				+2.0
3,589,326	+				+0.5
3,589,326	+				+1.6
3,589,360	+				-0.0
3,589,361	-				-0.5
3,589,361	-				+0.8
3,589,361	-				-0.7
3,589,365	+				-1.8
3,589,365	+				+1.9
3,589,365	+				+1.4
3,589,365	+				+1.9
3,589,365	+				-2.0
3,589,365	+				+0.4
3,589,365	+				+0.1
3,589,365	+				+1.1
3,589,366	-				-0.3
3,589,366	-				+0.9
3,589,366	-				-1.2
3,589,366	-				-0.2
3,589,366	-				+2.3
3,589,370	+				-0.0
3,589,416	+				+0.3
3,589,416	+				-0.5
3,589,417	-				+1.1
3,589,423	+				+0.6
3,589,424	-				+0.8
3,589,460	+		IAI47_16915	0.10	+2.2
3,589,462	-		IAI47_16915	0.11	-0.1
3,589,487	+		IAI47_16915	0.13	+0.4
3,589,589	-		IAI47_16915	0.23	+0.7
3,589,774	+		IAI47_16915	0.42	+0.2
3,589,797	+		IAI47_16915	0.44	-0.4
3,589,798	-		IAI47_16915	0.44	-0.8
3,589,819	+		IAI47_16915	0.46	+0.8
3,589,819	+		IAI47_16915	0.46	+0.1
3,589,819	+		IAI47_16915	0.46	+1.4
3,589,819	+		IAI47_16915	0.46	+0.7
3,589,819	+		IAI47_16915	0.46	+2.4
3,589,819	+		IAI47_16915	0.46	+0.3
3,589,820	-		IAI47_16915	0.46	-1.2
3,589,888	+		IAI47_16915	0.53	+3.2
3,589,888	+		IAI47_16915	0.53	+0.3
3,589,889	-		IAI47_16915	0.53	+0.9
3,589,889	-		IAI47_16915	0.53	+1.7
3,589,897	+		IAI47_16915	0.54	+0.8
3,589,897	+		IAI47_16915	0.54	+1.5
3,589,897	+		IAI47_16915	0.54	+1.1
3,589,898	-		IAI47_16915	0.54	+0.3
3,589,898	-		IAI47_16915	0.54	+0.3
3,589,898	-		IAI47_16915	0.54	-1.0
3,589,946	+		IAI47_16915	0.59	+0.1
3,589,947	-		IAI47_16915	0.59	+0.5
3,589,949	+		IAI47_16915	0.59	+2.3
3,589,949	+		IAI47_16915	0.59	-0.2
3,589,949	+		IAI47_16915	0.59	+0.9
3,589,949	+		IAI47_16915	0.59	+0.2
3,589,949	+		IAI47_16915	0.59	+1.2
3,589,949	+		IAI47_16915	0.59	+0.1
3,589,950	-		IAI47_16915	0.59	+0.3
3,589,950	-		IAI47_16915	0.59	+2.2
3,589,950	-		IAI47_16915	0.59	+0.5
3,589,950	-		IAI47_16915	0.59	+0.6
3,589,950	-		IAI47_16915	0.59	+0.4
3,589,950	-		IAI47_16915	0.59	-0.7
3,589,950	-		IAI47_16915	0.59	+2.4
3,589,950	-		IAI47_16915	0.59	-0.2
3,589,950	-		IAI47_16915	0.59	-0.1