Strain Fitness in Pantoea sp. MT58 around IAI47_15630

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,296,598	-				+1.0
3,296,598	-				+1.9
3,296,627	+				-0.5
3,296,627	+				+0.2
3,296,627	+				-0.7
3,296,627	+				-0.8
3,296,628	-				-0.2
3,296,628	-				+2.8
3,296,628	-				+0.8
3,296,628	-				-0.8
3,296,658	+				-1.5
3,296,658	+				+0.0
3,296,658	+				+0.7
3,296,658	+				+0.9
3,296,658	+				-0.2
3,296,658	+				-0.1
3,296,658	+				+0.5
3,296,658	+				-3.2
3,296,659	-				+0.0
3,296,659	-				-0.7
3,296,659	-				-0.8
3,296,659	-				-0.1
3,296,661	+				-0.6
3,296,661	+				-0.6
3,296,661	+				+2.8
3,296,661	+				-1.3
3,296,661	+				-0.3
3,296,662	-				-0.4
3,296,662	-				+3.1
3,296,662	-				-0.4
3,296,662	-				+0.2
3,296,772	+				-1.2
3,296,773	-				+0.3
3,296,808	+				-0.1
3,296,808	+				-0.1
3,296,808	+				+1.4
3,296,809	-				+1.1
3,296,809	-				-2.0
3,296,809	-				+2.0
3,296,809	-				+0.2
3,296,809	-				-0.7
3,296,809	-				-0.8
3,296,825	+				+0.8
3,296,825	+				-2.0
3,296,825	+				+2.1
3,296,826	-				-0.1
3,296,826	-				-1.8
3,296,835	+				+1.9
3,296,836	-				-0.6
3,296,836	-				+0.4
3,296,836	-				+0.4
3,296,869	+				-0.1
3,296,870	-				+0.1
3,297,195	+		IAI47_15625	0.61	-0.5
3,297,196	-		IAI47_15625	0.61	+0.3
3,297,196	-		IAI47_15625	0.61	+0.5
3,297,196	-		IAI47_15625	0.61	+0.5
3,297,196	-		IAI47_15625	0.61	-1.1
3,297,224	+		IAI47_15625	0.66	+0.3
3,297,224	+		IAI47_15625	0.66	-0.3
3,297,224	+		IAI47_15625	0.66	-1.0
3,297,224	+		IAI47_15625	0.66	-1.1
3,297,225	-		IAI47_15625	0.67	-1.2
3,297,225	-		IAI47_15625	0.67	-1.0
3,297,225	-		IAI47_15625	0.67	-1.2
3,297,225	-		IAI47_15625	0.67	+0.7
3,297,225	-		IAI47_15625	0.67	-2.0
3,297,225	-		IAI47_15625	0.67	-0.3
3,297,225	-		IAI47_15625	0.67	-1.1
3,297,235	+		IAI47_15625	0.68	-2.2
3,297,235	+		IAI47_15625	0.68	-0.1
3,297,325	-		IAI47_15625	0.85	-0.5
3,297,408	+				+0.2
3,297,408	+				-2.5
3,297,409	-				-0.5
3,297,434	-				-0.4
3,297,456	+				+1.9
3,297,456	+				+0.8
3,297,456	+				-1.1
3,297,456	+				-1.3
3,297,456	+				+1.2
3,297,456	+				+0.2
3,297,457	-				-3.3
3,297,457	-				-1.1
3,297,457	-				+0.1
3,297,457	-				+2.2
3,297,522	+		IAI47_15630	0.19	-0.8
3,297,523	-		IAI47_15630	0.19	+0.7
3,297,545	-		IAI47_15630	0.22	+0.7
3,297,575	-		IAI47_15630	0.27	+0.8
3,297,630	+		IAI47_15630	0.34	+2.7
3,297,631	-		IAI47_15630	0.34	+2.1
3,297,631	-		IAI47_15630	0.34	-0.2
3,297,720	-		IAI47_15630	0.47	-1.1
3,297,720	-		IAI47_15630	0.47	+0.6
3,297,784	+		IAI47_15630	0.56	-1.3
3,297,784	+		IAI47_15630	0.56	-0.1
3,297,784	+		IAI47_15630	0.56	+1.1
3,297,785	-		IAI47_15630	0.56	+0.5
3,297,785	-		IAI47_15630	0.56	-0.4
3,297,785	-		IAI47_15630	0.56	-0.1
3,297,786	+		IAI47_15630	0.56	+0.8
3,297,786	+		IAI47_15630	0.56	-0.6
3,297,786	+		IAI47_15630	0.56	+0.5
3,297,786	+		IAI47_15630	0.56	+0.8
3,297,786	+		IAI47_15630	0.56	-1.5
3,297,786	+		IAI47_15630	0.56	-0.7
3,297,787	-		IAI47_15630	0.57	+1.0
3,297,829	+		IAI47_15630	0.63	+1.7
3,297,829	+		IAI47_15630	0.63	+0.6
3,297,979	+		IAI47_15630	0.84	+0.5
3,297,979	+		IAI47_15630	0.84	-0.8
3,297,980	-		IAI47_15630	0.84	+1.6
3,297,980	-		IAI47_15630	0.84	+0.5
3,297,980	-		IAI47_15630	0.84	-0.4
3,297,980	-		IAI47_15630	0.84	-0.8
3,297,980	-		IAI47_15630	0.84	-0.3
3,297,980	-		IAI47_15630	0.84	+0.2
3,297,980	-		IAI47_15630	0.84	-0.3
3,298,016	+		IAI47_15630	0.89	+0.3
3,298,025	+				+0.3
3,298,030	+				-1.0
3,298,030	+				+0.5
3,298,030	+				+0.4
3,298,031	-				+1.1
3,298,031	-				+0.4
3,298,031	-				-0.0
3,298,043	+				-0.7
3,298,065	+				+0.5
3,298,066	-				-0.1
3,298,082	+				+0.5
3,298,082	+				-0.0
3,298,082	+				+1.1
3,298,083	-				-1.0
3,298,083	-				+1.0
3,298,091	-				+1.2
3,298,091	-				-0.5
3,298,093	+				-0.2
3,298,093	+				+1.7
3,298,115	+				-0.3
3,298,116	-				+0.0
3,298,131	+				-0.0
3,298,132	-				-0.1
3,298,142	+				-0.3
3,298,142	+				+0.2
3,298,142	+				-0.2
3,298,143	-				-0.7
3,298,143	-				+3.0
3,298,208	+				-1.1
3,298,208	+				+0.2
3,298,212	+				-1.7
3,298,212	+				-1.9
3,298,250	+				-2.3
3,298,264	+				-2.0
3,298,311	+				-2.0
3,298,311	+				-1.4
3,298,311	+				-1.3
3,298,311	+				-2.2
3,298,311	+				-2.2
3,298,311	+				-1.1
3,298,313	+				+0.5
3,298,313	+				-3.4
3,298,313	+				-1.8
3,298,313	+				-0.4
3,298,313	+				-0.4
3,298,324	-				-3.1
3,298,432	+		IAI47_15635	0.20	-3.3
3,298,483	+		IAI47_15635	0.31	-2.7
3,298,511	-		IAI47_15635	0.38	-2.8
3,298,540	+		IAI47_15635	0.44	-1.9
3,298,618	+		IAI47_15635	0.61	-3.0
3,298,813	+				-0.2
3,298,813	+				-0.8
3,298,868	+				-0.3
3,298,868	+				-0.2
3,298,868	+				+1.1
3,298,868	+				-0.1
3,298,869	-				+0.5
3,298,869	-				+0.3
3,298,869	-				-0.9
3,298,869	-				+1.9
3,298,869	-				-0.3
3,298,869	-				+0.4
3,298,884	-				+0.5
3,298,884	-				+1.2
3,298,934	+				-2.5
3,298,934	+				+0.0
3,298,934	+				-0.3
3,298,953	+				+0.5
3,298,953	+				-0.0
3,298,953	+				-1.6
3,298,954	-				+0.2
3,298,991	-		IAI47_15640	0.14	+1.1
3,298,991	-		IAI47_15640	0.14	+0.6
3,299,003	+		IAI47_15640	0.15	-2.0
3,299,003	+		IAI47_15640	0.15	-0.4
3,299,003	+		IAI47_15640	0.15	+0.4
3,299,004	-		IAI47_15640	0.15	-0.7
3,299,004	-		IAI47_15640	0.15	-0.7
3,299,023	+		IAI47_15640	0.18	-2.0
3,299,024	-		IAI47_15640	0.18	+1.1
3,299,024	-		IAI47_15640	0.18	+0.2
3,299,042	+		IAI47_15640	0.20	-2.3
3,299,043	-		IAI47_15640	0.20	-0.0
3,299,043	-		IAI47_15640	0.20	-1.5
3,299,064	+		IAI47_15640	0.22	+0.3
3,299,064	+		IAI47_15640	0.22	-0.5
3,299,065	-		IAI47_15640	0.22	-0.6
3,299,065	-		IAI47_15640	0.22	+0.2
3,299,071	+		IAI47_15640	0.23	-1.3