Strain Fitness in Pantoea sp. MT58 around IAI47_11840

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,510,195	+		IAI47_11830	0.79	-1.0
2,510,196	-		IAI47_11830	0.79	-3.0
2,510,196	-		IAI47_11830	0.79	-1.8
2,510,209	+		IAI47_11830	0.80	+0.6
2,510,329	-				-1.2
2,510,355	+				-0.5
2,510,356	-				-2.5
2,510,387	+				+1.2
2,510,387	+				-0.9
2,510,387	+				+1.1
2,510,388	-				+1.1
2,510,388	-				-0.7
2,510,388	-				-0.9
2,510,388	-				-1.0
2,510,392	+				-0.2
2,510,424	+				-0.8
2,510,424	+				+0.8
2,510,425	-				+1.7
2,510,498	+		IAI47_11835	0.13	+0.3
2,510,498	+		IAI47_11835	0.13	+0.7
2,510,499	-		IAI47_11835	0.13	+1.0
2,510,539	+		IAI47_11835	0.19	-0.2
2,510,540	-		IAI47_11835	0.19	-2.7
2,510,540	-		IAI47_11835	0.19	-1.9
2,510,595	+		IAI47_11835	0.28	-0.7
2,510,595	+		IAI47_11835	0.28	-0.4
2,510,595	+		IAI47_11835	0.28	+0.4
2,510,595	+		IAI47_11835	0.28	-1.1
2,510,596	-		IAI47_11835	0.28	+1.0
2,510,596	-		IAI47_11835	0.28	+0.4
2,510,651	+		IAI47_11835	0.36	-1.4
2,510,651	+		IAI47_11835	0.36	+0.2
2,510,652	-		IAI47_11835	0.36	-0.8
2,510,654	+		IAI47_11835	0.37	-0.3
2,510,654	+		IAI47_11835	0.37	+0.2
2,510,655	-		IAI47_11835	0.37	-1.2
2,510,672	+		IAI47_11835	0.39	-0.2
2,510,693	-		IAI47_11835	0.42	-0.4
2,510,693	-		IAI47_11835	0.42	+0.5
2,510,758	+		IAI47_11835	0.52	-0.7
2,510,759	-		IAI47_11835	0.52	-1.3
2,510,759	-		IAI47_11835	0.52	-0.6
2,510,796	+		IAI47_11835	0.58	+0.1
2,510,796	+		IAI47_11835	0.58	-0.7
2,510,796	+		IAI47_11835	0.58	-0.5
2,510,796	+		IAI47_11835	0.58	+0.8
2,510,796	+		IAI47_11835	0.58	-0.0
2,510,797	-		IAI47_11835	0.58	+0.5
2,510,797	-		IAI47_11835	0.58	+0.6
2,510,797	-		IAI47_11835	0.58	-0.0
2,510,802	+		IAI47_11835	0.59	-0.8
2,510,802	+		IAI47_11835	0.59	-2.3
2,510,802	+		IAI47_11835	0.59	+0.4
2,510,802	+		IAI47_11835	0.59	+0.5
2,510,803	-		IAI47_11835	0.59	-2.0
2,510,803	-		IAI47_11835	0.59	-0.6
2,510,803	-		IAI47_11835	0.59	-0.0
2,510,804	+		IAI47_11835	0.59	+2.0
2,510,804	+		IAI47_11835	0.59	+0.2
2,510,804	+		IAI47_11835	0.59	-1.6
2,510,805	-		IAI47_11835	0.59	+1.3
2,510,805	-		IAI47_11835	0.59	-2.3
2,510,805	-		IAI47_11835	0.59	-0.3
2,510,805	-		IAI47_11835	0.59	-0.4
2,510,805	-		IAI47_11835	0.59	+0.3
2,510,805	-		IAI47_11835	0.59	+1.2
2,510,805	-		IAI47_11835	0.59	-1.6
2,510,826	+		IAI47_11835	0.62	-0.4
2,510,827	-		IAI47_11835	0.63	+0.3
2,510,827	-		IAI47_11835	0.63	-2.4
2,510,827	-		IAI47_11835	0.63	-0.3
2,510,827	-		IAI47_11835	0.63	-0.5
2,510,827	-		IAI47_11835	0.63	+0.6
2,510,894	+		IAI47_11835	0.73	+0.6
2,510,894	+		IAI47_11835	0.73	-0.1
2,510,894	+		IAI47_11835	0.73	+0.6
2,510,895	-		IAI47_11835	0.73	-0.8
2,510,895	-		IAI47_11835	0.73	-2.4
2,510,895	-		IAI47_11835	0.73	+1.2
2,510,895	-		IAI47_11835	0.73	+0.7
2,510,895	-		IAI47_11835	0.73	-1.3
2,510,966	+		IAI47_11835	0.84	-0.0
2,510,966	+		IAI47_11835	0.84	+1.3
2,510,967	-		IAI47_11835	0.84	-0.7
2,510,967	-		IAI47_11835	0.84	+0.7
2,511,067	-				+0.1
2,511,076	+				+1.7
2,511,076	+				-1.2
2,511,077	-				+0.3
2,511,094	+				+0.8
2,511,094	+				-1.0
2,511,118	+		IAI47_11840	0.10	-0.1
2,511,118	+		IAI47_11840	0.10	+0.5
2,511,118	+		IAI47_11840	0.10	+0.5
2,511,119	-		IAI47_11840	0.11	+0.7
2,511,119	-		IAI47_11840	0.11	-0.2
2,511,119	-		IAI47_11840	0.11	+0.2
2,511,119	-		IAI47_11840	0.11	-0.0
2,511,119	-		IAI47_11840	0.11	-0.4
2,511,122	+		IAI47_11840	0.11	-1.2
2,511,122	+		IAI47_11840	0.11	-1.2
2,511,143	+		IAI47_11840	0.16	-0.4
2,511,144	-		IAI47_11840	0.17	+0.4
2,511,145	+		IAI47_11840	0.17	-0.2
2,511,145	+		IAI47_11840	0.17	-0.4
2,511,296	+		IAI47_11840	0.53	-0.5
2,511,296	+		IAI47_11840	0.53	+1.9
2,511,296	+		IAI47_11840	0.53	-0.7
2,511,297	-		IAI47_11840	0.54	-0.7
2,511,297	-		IAI47_11840	0.54	-1.7
2,511,369	-		IAI47_11840	0.71	-0.6
2,511,398	+		IAI47_11840	0.78	-1.4
2,511,399	-		IAI47_11840	0.78	+1.4
2,511,399	-		IAI47_11840	0.78	-1.0
2,511,399	-		IAI47_11840	0.78	-1.6
2,511,401	+		IAI47_11840	0.79	-0.8
2,511,401	+		IAI47_11840	0.79	-1.0
2,511,401	+		IAI47_11840	0.79	-3.2
2,511,401	+		IAI47_11840	0.79	+0.3
2,511,401	+		IAI47_11840	0.79	-1.3
2,511,401	+		IAI47_11840	0.79	-0.0
2,511,402	-		IAI47_11840	0.79	+0.7
2,511,402	-		IAI47_11840	0.79	-0.9
2,511,404	+		IAI47_11840	0.79	-2.1
2,511,404	+		IAI47_11840	0.79	-0.4
2,511,404	+		IAI47_11840	0.79	-0.0
2,511,405	-		IAI47_11840	0.80	-0.3
2,511,405	-		IAI47_11840	0.80	-0.5
2,511,405	-		IAI47_11840	0.80	+0.2
2,511,405	-		IAI47_11840	0.80	-0.4
2,511,406	+		IAI47_11840	0.80	-0.1
2,511,407	-		IAI47_11840	0.80	+0.9
2,511,488	+				-2.1
2,511,488	+				-0.7
2,511,488	+				+0.1
2,511,488	+				+0.3
2,511,488	+				-2.4
2,511,489	-				-0.6
2,511,489	-				+0.7
2,511,489	-				+0.1
2,511,506	+				+0.2
2,511,506	+				-2.9
2,511,506	+				+0.4
2,511,507	-				-0.7
2,511,533	+				-1.8
2,511,534	-				-1.0
2,511,579	+		IAI47_11845	0.19	+2.8
2,511,580	-		IAI47_11845	0.20	-0.8
2,511,608	+		IAI47_11845	0.27	+0.7
2,511,609	-		IAI47_11845	0.27	+0.1
2,511,685	-		IAI47_11845	0.47	-0.7
2,511,705	+		IAI47_11845	0.52	-1.2
2,511,760	+		IAI47_11845	0.66	+1.0
2,511,760	+		IAI47_11845	0.66	-0.9
2,511,761	-		IAI47_11845	0.67	+0.4
2,511,761	-		IAI47_11845	0.67	-1.4
2,511,767	+		IAI47_11845	0.68	+2.3
2,511,767	+		IAI47_11845	0.68	-0.8
2,511,768	-		IAI47_11845	0.68	-0.1
2,511,811	-		IAI47_11845	0.80	-0.9
2,511,874	+				-0.8
2,511,874	+				+0.4
2,511,874	+				+0.1
2,511,874	+				+0.5
2,511,875	-				+0.8
2,511,926	+				-0.3
2,511,926	+				+0.4
2,511,926	+				+0.3
2,511,927	-				+0.2
2,511,927	-				-1.2
2,511,927	-				+0.3
2,511,927	-				-1.0
2,511,931	+				-0.3
2,511,931	+				-1.9
2,511,932	-				+1.1
2,512,025	-				-2.3
2,512,056	+				+1.0
2,512,056	+				+1.8
2,512,075	-				+0.3
2,512,100	+		IAI47_11850	0.15	-0.6
2,512,101	-		IAI47_11850	0.16	+1.9
2,512,101	-		IAI47_11850	0.16	-0.1
2,512,101	-		IAI47_11850	0.16	+0.7
2,512,134	+		IAI47_11850	0.34	-0.4
2,512,134	+		IAI47_11850	0.34	-0.5
2,512,134	+		IAI47_11850	0.34	-0.3
2,512,135	-		IAI47_11850	0.34	-0.1
2,512,135	-		IAI47_11850	0.34	+0.9
2,512,157	-		IAI47_11850	0.47	+0.7
2,512,222	+		IAI47_11850	0.83	+0.0
2,512,299	+				-0.9
2,512,299	+				-1.9
2,512,300	-				-1.1
2,512,300	-				+0.2
2,512,307	-				+0.0
2,512,330	+				-0.1
2,512,331	-				+0.8
2,512,346	-				+0.5
2,512,346	-				+0.1
2,512,352	+				+0.3
2,512,389	+				-0.7
2,512,389	+				+0.9
2,512,390	-				-1.4
2,512,390	-				-0.7
2,512,390	-				-2.7
2,512,395	+				-0.1
2,512,395	+				-0.9
2,512,396	-				+0.8
2,512,396	-				+2.7
2,512,396	-				+0.8
2,512,396	-				+1.2
2,512,396	-				+0.1
2,512,396	-				+0.0
2,512,396	-				-0.0
2,512,396	-				-2.1
2,512,396	-				+1.1
2,512,403	+				+1.6
2,512,403	+				+0.8
2,512,404	-				+1.0
2,512,404	-				+1.1
2,512,434	-				-1.1
2,512,477	+				+0.4
2,512,477	+				+0.7
2,512,478	-				+2.3
2,512,478	-				-1.2
2,512,488	-				-0.5
2,512,488	-				+1.2