Strain Fitness in Pantoea sp. MT58 around IAI47_07955

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,682,213	+				+0.5
1,682,288	+				+0.9
1,682,288	+				+1.2
1,682,289	-				+0.4
1,682,318	+				+0.3
1,682,345	+				-0.6
1,682,346	-				-0.4
1,682,350	+				+1.7
1,682,350	+				+0.1
1,682,350	+				+0.1
1,682,351	-				+0.7
1,682,367	-				-0.6
1,682,367	-				-0.8
1,682,382	+				-0.4
1,682,383	-				+0.6
1,682,504	+		IAI47_07945	0.24	-0.2
1,682,504	+		IAI47_07945	0.24	-0.5
1,682,559	+		IAI47_07945	0.49	-0.5
1,682,560	-		IAI47_07945	0.49	-0.1
1,682,560	-		IAI47_07945	0.49	+0.9
1,682,560	-		IAI47_07945	0.49	+3.1
1,682,560	-		IAI47_07945	0.49	-1.1
1,682,560	-		IAI47_07945	0.49	+1.8
1,682,561	+		IAI47_07945	0.50	+0.8
1,682,561	+		IAI47_07945	0.50	+0.1
1,682,561	+		IAI47_07945	0.50	-0.0
1,682,561	+		IAI47_07945	0.50	+1.5
1,682,561	+		IAI47_07945	0.50	+0.7
1,682,561	+		IAI47_07945	0.50	+1.1
1,682,561	+		IAI47_07945	0.50	+0.3
1,682,562	-		IAI47_07945	0.50	-1.3
1,682,562	-		IAI47_07945	0.50	+0.6
1,682,562	-		IAI47_07945	0.50	+0.3
1,682,562	-		IAI47_07945	0.50	+2.6
1,682,562	-		IAI47_07945	0.50	+0.8
1,682,562	-		IAI47_07945	0.50	+0.2
1,682,596	-		IAI47_07945	0.66	-1.7
1,682,603	-		IAI47_07945	0.69	-1.6
1,682,605	+		IAI47_07945	0.70	+0.5
1,682,605	+		IAI47_07945	0.70	+1.1
1,682,606	-		IAI47_07945	0.70	-0.2
1,682,606	-		IAI47_07945	0.70	-0.5
1,682,606	-		IAI47_07945	0.70	+0.9
1,682,606	-		IAI47_07945	0.70	+0.5
1,682,626	+		IAI47_07945	0.79	-0.7
1,682,626	+		IAI47_07945	0.79	+0.1
1,682,697	+				-0.0
1,682,697	+				-0.5
1,682,697	+				-0.4
1,682,697	+				-0.3
1,682,697	+				-0.7
1,682,704	+				-2.4
1,682,704	+				-0.3
1,682,705	-				+0.2
1,682,705	-				-0.2
1,682,706	+				-0.8
1,682,706	+				+0.7
1,682,706	+				+2.2
1,682,706	+				+0.0
1,682,706	+				-0.5
1,682,706	+				+0.7
1,682,706	+				-1.8
1,682,706	+				+0.8
1,682,707	-				+0.5
1,682,707	-				+2.3
1,682,707	-				+0.3
1,682,707	-				+0.8
1,682,707	-				+1.5
1,682,707	-				+1.3
1,682,707	-				-0.1
1,682,784	+				+0.2
1,682,784	+				+0.2
1,682,785	-				-2.2
1,682,785	-				-1.0
1,682,785	-				-0.2
1,682,805	+				-0.3
1,682,805	+				+1.0
1,682,806	-				+0.3
1,682,806	-				-0.5
1,682,832	+				+0.3
1,682,832	+				+0.3
1,682,833	-				+0.0
1,682,833	-				-1.4
1,682,833	-				+0.5
1,682,833	-				-1.7
1,682,833	-				+0.5
1,682,834	+				+0.9
1,682,834	+				+1.1
1,682,870	+				+1.3
1,682,870	+				+0.6
1,682,875	+				+1.3
1,682,876	-				-0.2
1,682,876	-				+0.4
1,682,904	+				-0.7
1,682,905	-				+0.1
1,682,941	+				-0.9
1,682,941	+				+0.1
1,682,941	+				-1.5
1,682,942	-				+0.1
1,682,942	-				+1.6
1,682,942	-				-0.4
1,682,948	+				+0.8
1,682,952	-				+1.2
1,682,952	-				-2.1
1,682,964	+				+1.0
1,682,970	+				+0.0
1,682,971	-				+0.0
1,682,975	-				+0.5
1,683,004	+		IAI47_07950	0.11	+0.7
1,683,004	+		IAI47_07950	0.11	+0.0
1,683,004	+		IAI47_07950	0.11	-0.8
1,683,004	+		IAI47_07950	0.11	+0.8
1,683,016	-		IAI47_07950	0.18	-0.5
1,683,040	+		IAI47_07950	0.33	-0.1
1,683,040	+		IAI47_07950	0.33	+1.3
1,683,040	+		IAI47_07950	0.33	-0.5
1,683,041	-		IAI47_07950	0.34	-0.0
1,683,041	-		IAI47_07950	0.34	+2.0
1,683,098	+		IAI47_07950	0.70	-0.7
1,683,098	+		IAI47_07950	0.70	+1.1
1,683,098	+		IAI47_07950	0.70	+0.4
1,683,098	+		IAI47_07950	0.70	+0.2
1,683,099	-		IAI47_07950	0.70	+0.9
1,683,099	-		IAI47_07950	0.70	-0.5
1,683,099	-		IAI47_07950	0.70	-0.1
1,683,099	-		IAI47_07950	0.70	+0.8
1,683,099	-		IAI47_07950	0.70	-0.3
1,683,099	-		IAI47_07950	0.70	+0.3
1,683,099	-		IAI47_07950	0.70	-0.9
1,683,100	+		IAI47_07950	0.71	+0.3
1,683,101	-		IAI47_07950	0.72	-0.8
1,683,101	-		IAI47_07950	0.72	-0.4
1,683,130	+				-1.4
1,683,180	+				+0.1
1,683,189	+				+2.3
1,683,189	+				-1.5
1,683,190	-				-0.9
1,683,192	+				+1.2
1,683,192	+				-0.5
1,683,192	+				-1.3
1,683,192	+				-0.0
1,683,193	-				-0.8
1,683,193	-				+0.2
1,683,193	-				-0.4
1,683,193	-				-1.0
1,683,193	-				-0.1
1,683,215	+				+0.4
1,683,215	+				+0.6
1,683,215	+				+2.3
1,683,215	+				+2.2
1,683,216	-				-0.7
1,683,216	-				-0.5
1,683,300	+		IAI47_07955	0.47	-0.1
1,683,300	+		IAI47_07955	0.47	-0.8
1,683,301	-		IAI47_07955	0.48	-0.2
1,683,301	-		IAI47_07955	0.48	-1.0
1,683,309	-		IAI47_07955	0.52	+1.3
1,683,337	-		IAI47_07955	0.66	-1.9
1,683,349	-		IAI47_07955	0.72	-0.3
1,683,435	+				+0.2
1,683,435	+				-1.4
1,683,436	-				-0.9
1,683,436	-				-1.2
1,683,511	+				+1.4
1,683,511	+				+1.3
1,683,511	+				-1.4
1,683,511	+				+0.9
1,683,511	+				+0.3
1,683,512	-				+0.6
1,683,512	-				-0.5
1,683,512	-				-1.8
1,683,512	-				+0.5
1,683,512	-				-0.6
1,683,527	+				-2.1
1,683,527	+				+0.2
1,683,527	+				-0.7
1,683,528	-				+1.1
1,683,528	-				-0.0
1,683,528	-				+0.2
1,683,528	-				-0.9
1,683,528	-				+0.1
1,683,654	+				+0.9
1,683,654	+				+0.1
1,683,655	-				-0.5
1,683,655	-				-0.9
1,683,655	-				+0.4
1,683,655	-				-0.5
1,683,735	-		IAI47_07960	0.13	-0.7
1,683,735	-		IAI47_07960	0.13	+0.0
1,683,812	+		IAI47_07960	0.18	-0.2
1,683,812	+		IAI47_07960	0.18	-1.3
1,683,812	+		IAI47_07960	0.18	+0.7
1,683,812	+		IAI47_07960	0.18	-0.8
1,683,812	+		IAI47_07960	0.18	+0.1
1,683,812	+		IAI47_07960	0.18	+0.3
1,683,812	+		IAI47_07960	0.18	-0.3
1,683,812	+		IAI47_07960	0.18	-0.4
1,683,813	-		IAI47_07960	0.18	-0.2
1,683,813	-		IAI47_07960	0.18	-0.3
1,683,813	-		IAI47_07960	0.18	+0.7
1,683,813	-		IAI47_07960	0.18	+0.6
1,683,813	-		IAI47_07960	0.18	+1.0
1,683,813	-		IAI47_07960	0.18	-1.9
1,683,840	+		IAI47_07960	0.19	+0.2
1,683,840	+		IAI47_07960	0.19	-1.0
1,683,902	+		IAI47_07960	0.23	+2.1
1,683,903	-		IAI47_07960	0.23	+2.7
1,683,915	+		IAI47_07960	0.24	-1.7
1,683,918	+		IAI47_07960	0.24	+0.0
1,683,918	+		IAI47_07960	0.24	-0.9
1,683,919	-		IAI47_07960	0.24	+0.2
1,683,927	+		IAI47_07960	0.24	-1.7
1,683,927	+		IAI47_07960	0.24	+0.3
1,683,927	+		IAI47_07960	0.24	-0.3
1,683,928	-		IAI47_07960	0.24	+0.0
1,683,928	-		IAI47_07960	0.24	-0.4
1,683,928	-		IAI47_07960	0.24	+1.5
1,683,935	+		IAI47_07960	0.25	-0.7
1,683,935	+		IAI47_07960	0.25	-0.8
1,683,936	-		IAI47_07960	0.25	+0.2
1,683,981	+		IAI47_07960	0.28	+0.5
1,684,070	+		IAI47_07960	0.33	-0.1
1,684,071	-		IAI47_07960	0.33	-2.2
1,684,071	-		IAI47_07960	0.33	-1.6
1,684,071	-		IAI47_07960	0.33	+0.0
1,684,071	-		IAI47_07960	0.33	-0.3
1,684,073	+		IAI47_07960	0.33	-1.1
1,684,074	-		IAI47_07960	0.33	+0.0
1,684,119	-		IAI47_07960	0.36	+0.1
1,684,119	-		IAI47_07960	0.36	-0.6
1,684,142	+		IAI47_07960	0.37	-1.5
1,684,143	-		IAI47_07960	0.37	-0.8
1,684,241	+		IAI47_07960	0.43	-1.2
1,684,242	-		IAI47_07960	0.43	+0.8
1,684,326	+		IAI47_07960	0.48	-0.4
1,684,327	-		IAI47_07960	0.48	-0.6
1,684,327	-		IAI47_07960	0.48	+0.2
1,684,345	+		IAI47_07960	0.49	+0.3
1,684,346	-		IAI47_07960	0.49	+1.7
1,684,346	-		IAI47_07960	0.49	-0.6