Strain Fitness in Pantoea sp. MT58 around IAI47_07890

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,671,824	+				+1.5
1,671,824	+				-1.6
1,671,824	+				-1.1
1,671,824	+				+0.4
1,671,824	+				+0.2
1,671,824	+				+0.0
1,671,824	+				+2.6
1,671,824	+				-1.5
1,671,825	-				+0.2
1,671,825	-				+1.5
1,671,825	-				-2.5
1,671,825	-				+0.8
1,671,825	-				+1.1
1,671,825	-				+1.2
1,671,825	-				+0.7
1,671,825	-				-0.7
1,671,825	-				-0.3
1,671,825	-				+1.8
1,671,826	-				+1.2
1,671,880	+				+0.8
1,671,880	+				-0.9
1,671,907	+				-1.7
1,671,908	-				-0.0
1,671,914	+				+0.3
1,671,914	+				+0.1
1,671,915	-				-0.4
1,671,915	-				-1.7
1,671,915	-				-2.5
1,671,960	+				+0.3
1,671,960	+				+0.0
1,671,960	+				+1.1
1,671,960	+				+3.2
1,671,960	+				+0.5
1,671,960	+				+0.3
1,671,960	+				-2.1
1,671,960	+				-0.4
1,671,960	+				+0.5
1,671,960	+				+1.3
1,671,961	-				+1.3
1,671,961	-				+0.6
1,671,961	-				-0.4
1,671,961	-				-0.2
1,671,961	-				-0.9
1,671,976	+				-1.7
1,671,977	-				-0.8
1,672,023	+				+0.6
1,672,024	-				-0.5
1,672,032	+				-1.1
1,672,032	+				+0.3
1,672,032	+				+0.2
1,672,033	-				+0.2
1,672,033	-				-0.8
1,672,033	-				+0.2
1,672,034	+				-0.7
1,672,034	+				+1.1
1,672,035	-				+1.2
1,672,128	+		IAI47_07880	0.46	-0.4
1,672,128	+		IAI47_07880	0.46	+0.7
1,672,128	+		IAI47_07880	0.46	+0.9
1,672,128	+		IAI47_07880	0.46	+1.3
1,672,128	+		IAI47_07880	0.46	-0.8
1,672,129	-		IAI47_07880	0.46	+0.0
1,672,129	-		IAI47_07880	0.46	-0.6
1,672,129	-		IAI47_07880	0.46	+0.1
1,672,129	-		IAI47_07880	0.46	-0.7
1,672,165	+		IAI47_07880	0.69	+0.0
1,672,165	+		IAI47_07880	0.69	-0.5
1,672,165	+		IAI47_07880	0.69	-0.1
1,672,166	-		IAI47_07880	0.70	+0.9
1,672,166	-		IAI47_07880	0.70	+0.6
1,672,166	-		IAI47_07880	0.70	-1.6
1,672,166	-		IAI47_07880	0.70	-0.7
1,672,177	+		IAI47_07880	0.77	+1.9
1,672,177	+		IAI47_07880	0.77	+0.8
1,672,177	+		IAI47_07880	0.77	+0.0
1,672,177	+		IAI47_07880	0.77	+0.3
1,672,198	+				+0.3
1,672,210	+				+1.6
1,672,210	+				+0.9
1,672,211	-				-1.3
1,672,301	+				+0.0
1,672,301	+				+0.9
1,672,302	-				+0.8
1,672,302	-				-0.7
1,672,302	-				-1.0
1,672,302	-				-1.4
1,672,341	+				+1.1
1,672,342	-				+0.9
1,672,342	-				-1.2
1,672,365	+				-0.4
1,672,366	-				+2.5
1,672,376	+				-2.1
1,672,376	+				+0.0
1,672,376	+				+1.3
1,672,376	+				-0.5
1,672,377	-				+1.3
1,672,391	+				+0.1
1,672,443	-				-0.7
1,672,443	-				+0.5
1,672,443	-				-0.8
1,672,443	-				-1.1
1,672,449	+				+0.8
1,672,459	+				-0.2
1,672,491	+				+1.7
1,672,491	+				-1.1
1,672,491	+				+0.9
1,672,492	-				-0.2
1,672,537	+				+1.1
1,672,541	+				-1.0
1,672,541	+				+0.7
1,672,541	+				-0.8
1,672,541	+				-0.8
1,672,541	+				+0.0
1,672,541	+				-0.5
1,672,542	-				+0.5
1,672,542	-				+0.3
1,672,542	-				+0.6
1,672,542	-				-0.2
1,672,542	-				+1.1
1,672,542	-				+0.1
1,672,556	-				+0.5
1,672,566	+				-0.7
1,672,566	+				+2.8
1,672,567	-				-0.4
1,672,568	+				-1.8
1,672,568	+				+0.1
1,672,569	-				+1.1
1,672,569	-				+1.7
1,672,596	-				-0.6
1,672,609	-				-0.5
1,672,647	-		IAI47_07885	0.43	-2.0
1,672,647	-		IAI47_07885	0.43	+2.5
1,672,712	+				-1.0
1,672,713	-				+0.1
1,672,727	-				-1.1
1,672,747	+				+1.0
1,672,747	+				+0.1
1,672,752	+				+0.4
1,672,752	+				-0.7
1,672,753	-				-0.3
1,672,753	-				+0.1
1,672,753	-				+0.8
1,672,753	-				+0.8
1,672,767	+				+0.0
1,672,768	-				-0.9
1,672,795	-				-0.8
1,672,845	+				+1.1
1,672,846	-				-0.0
1,672,866	+				+0.9
1,672,866	+				-0.2
1,672,866	+				+0.7
1,672,866	+				-1.7
1,672,866	+				+0.5
1,672,866	+				+0.5
1,672,866	+				+0.3
1,672,867	-				-2.1
1,672,867	-				+1.3
1,672,867	-				-0.2
1,672,867	-				+0.0
1,672,867	-				-0.7
1,672,960	-		IAI47_07890	0.22	+3.4
1,672,969	+		IAI47_07890	0.23	+1.6
1,672,970	-		IAI47_07890	0.23	+2.0
1,673,067	-		IAI47_07890	0.35	+0.7
1,673,088	+		IAI47_07890	0.38	+0.4
1,673,113	+		IAI47_07890	0.41	+0.0
1,673,113	+		IAI47_07890	0.41	+0.5
1,673,113	+		IAI47_07890	0.41	+0.6
1,673,114	-		IAI47_07890	0.41	+0.7
1,673,114	-		IAI47_07890	0.41	+0.5
1,673,114	-				+0.8
1,673,114	-		IAI47_07890	0.41	+0.0
1,673,114	-		IAI47_07890	0.41	+0.8
1,673,114	-		IAI47_07890	0.41	+2.2
1,673,190	-		IAI47_07890	0.51	-0.7
1,673,519	+				-0.5
1,673,519	+				-0.8
1,673,520	-				+0.9
1,673,520	-				+2.9
1,673,524	+				+0.9
1,673,525	-				-0.2
1,673,560	+				+1.6
1,673,560	+				-0.3
1,673,561	-				+0.0
1,673,561	-				+0.8
1,673,591	+				+1.6
1,673,591	+				+1.2
1,673,591	+				+1.5
1,673,592	-				+0.5
1,673,592	-				+1.4
1,673,592	-				+0.6
1,673,616	+				+0.2
1,673,616	+				-1.1
1,673,616	+				-0.5
1,673,618	+				-1.1
1,673,618	+				-0.3
1,673,618	+				+0.3
1,673,619	-				-0.0
1,673,657	+				-0.4
1,673,657	+				+0.3
1,673,658	-				+0.0
1,673,676	+				+0.3
1,673,677	-				-0.8
1,673,731	+				-1.7
1,673,731	+				+0.9
1,673,739	+				+0.4
1,673,739	+				+0.6
1,673,739	+				+0.2
1,673,739	+				-0.7
1,673,739	+				+0.8
1,673,740	-				+0.4
1,673,740	-				+0.8
1,673,740	-				+1.5
1,673,740	-				+0.9
1,673,740	-				-0.5
1,673,832	+		IAI47_07895	0.14	+0.1
1,673,842	+		IAI47_07895	0.15	-0.3
1,673,878	+		IAI47_07895	0.21	+0.7
1,673,903	+		IAI47_07895	0.24	+0.1
1,673,903	+		IAI47_07895	0.24	+0.1
1,673,903	+		IAI47_07895	0.24	-1.8
1,673,904	-		IAI47_07895	0.24	+1.5
1,673,904	-		IAI47_07895	0.24	+0.6
1,673,966	-		IAI47_07895	0.34	+0.3
1,673,980	+		IAI47_07895	0.36	-0.7
1,674,001	+		IAI47_07895	0.39	+0.2
1,674,001	+		IAI47_07895	0.39	+0.0
1,674,001	+		IAI47_07895	0.39	+1.3
1,674,001	+		IAI47_07895	0.39	+0.1
1,674,001	+		IAI47_07895	0.39	-0.1
1,674,001	+		IAI47_07895	0.39	-1.1
1,674,001	+		IAI47_07895	0.39	+1.3
1,674,002	-		IAI47_07895	0.39	-0.6
1,674,002	-		IAI47_07895	0.39	+0.1
1,674,002	-		IAI47_07895	0.39	+0.3
1,674,002	-		IAI47_07895	0.39	-0.0
1,674,002	-		IAI47_07895	0.39	+0.8
1,674,002	-		IAI47_07895	0.39	+0.2
1,674,002	-		IAI47_07895	0.39	-0.7
1,674,043	+		IAI47_07895	0.45	+1.0
1,674,070	+		IAI47_07895	0.49	+0.3
1,674,070	+		IAI47_07895	0.49	-0.3
1,674,070	+		IAI47_07895	0.49	-0.5
1,674,070	+		IAI47_07895	0.49	-1.1
1,674,070	+		IAI47_07895	0.49	-1.1
1,674,071	-		IAI47_07895	0.49	-2.0
1,674,071	-		IAI47_07895	0.49	+0.3
1,674,093	+		IAI47_07895	0.52	+0.8
1,674,094	-		IAI47_07895	0.53	-1.0
1,674,094	-		IAI47_07895	0.53	-0.7
1,674,094	-		IAI47_07895	0.53	+0.5
1,674,129	+		IAI47_07895	0.58	+0.8
1,674,129	+		IAI47_07895	0.58	-0.7
1,674,188	+		IAI47_07895	0.66	-0.1
1,674,188	+		IAI47_07895	0.66	-0.4
1,674,188	+		IAI47_07895	0.66	+1.0
1,674,188	+		IAI47_07895	0.66	-2.0
1,674,188	+		IAI47_07895	0.66	+0.6
1,674,188	+		IAI47_07895	0.66	-0.0
1,674,188	+		IAI47_07895	0.66	-0.6
1,674,189	-		IAI47_07895	0.67	-0.4
1,674,189	-		IAI47_07895	0.67	+0.0
1,674,189	-		IAI47_07895	0.67	+0.5
1,674,219	+		IAI47_07895	0.71	+1.5
1,674,219	+		IAI47_07895	0.71	-0.7
1,674,219	+		IAI47_07895	0.71	-1.6
1,674,220	-		IAI47_07895	0.71	-1.3
1,674,220	-		IAI47_07895	0.71	+0.1
1,674,220	-		IAI47_07895	0.71	-0.3
1,674,220	-		IAI47_07895	0.71	+0.9
1,674,249	+		IAI47_07895	0.75	+0.8
1,674,265	+		IAI47_07895	0.78	-1.2
1,674,265	+		IAI47_07895	0.78	+1.3
1,674,334	+		IAI47_07895	0.88	+0.6
1,674,334	+		IAI47_07895	0.88	-0.7
1,674,335	-		IAI47_07895	0.88	+1.8
1,674,335	-		IAI47_07895	0.88	+0.4
1,674,335	-		IAI47_07895	0.88	-0.2
1,674,335	-		IAI47_07895	0.88	-0.3
1,674,421	-				-0.9
1,674,431	+				-1.2
1,674,432	-				-0.4
1,674,434	+				+0.9
1,674,434	+				-1.0
1,674,437	+				-2.8
1,674,437	+				-0.1
1,674,437	+				-0.8
1,674,437	+				-1.3
1,674,438	-				+0.4
1,674,449	-				-1.0
1,674,449	-				-1.0
1,674,456	+				-2.7
1,674,456	+				+1.0
1,674,456	+				-1.0
1,674,456	+				+0.5
1,674,457	-				-2.0
1,674,492	-				-1.2
1,674,501	-				+1.2
1,674,541	+				-2.4
1,674,559	+				-0.2