Strain Fitness in Pantoea sp. MT58 around IAI47_18605

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,961,530	+		IAI47_18595	0.48	+2.4
3,961,530	+		IAI47_18595	0.48	+1.7
3,961,530	+		IAI47_18595	0.48	+2.8
3,961,531	-		IAI47_18595	0.48	+2.2
3,961,531	-		IAI47_18595	0.48	+4.0
3,961,531	-		IAI47_18595	0.48	+2.6
3,961,531	-		IAI47_18595	0.48	+1.8
3,961,540	+		IAI47_18595	0.49	+3.3
3,961,541	-		IAI47_18595	0.49	+5.5
3,961,551	+		IAI47_18595	0.50	+1.0
3,961,551	+		IAI47_18595	0.50	+3.0
3,961,551	+		IAI47_18595	0.50	+3.1
3,961,551	+		IAI47_18595	0.50	+2.9
3,961,551	+		IAI47_18595	0.50	+2.9
3,961,551	+		IAI47_18595	0.50	+5.9
3,961,552	-		IAI47_18595	0.50	+1.6
3,961,552	-		IAI47_18595	0.50	+3.5
3,961,552	-		IAI47_18595	0.50	+3.4
3,961,552	-		IAI47_18595	0.50	+2.0
3,961,552	-		IAI47_18595	0.50	+2.3
3,961,552	-		IAI47_18595	0.50	+3.3
3,961,552	-		IAI47_18595	0.50	+2.4
3,961,552	-		IAI47_18595	0.50	+2.5
3,961,552	-		IAI47_18595	0.50	+0.0
3,961,552	-		IAI47_18595	0.50	+2.4
3,961,552	-		IAI47_18595	0.50	+2.0
3,961,552	-		IAI47_18595	0.50	+0.2
3,961,552	-		IAI47_18595	0.50	-0.5
3,961,552	-		IAI47_18595	0.50	+2.1
3,961,561	+		IAI47_18595	0.51	+4.7
3,961,561	+		IAI47_18595	0.51	+2.7
3,961,593	+		IAI47_18595	0.54	+3.5
3,961,594	+		IAI47_18595	0.54	+5.6
3,961,594	+		IAI47_18595	0.54	+0.7
3,961,594	+		IAI47_18595	0.54	+3.3
3,961,595	-		IAI47_18595	0.54	+3.3
3,961,595	-		IAI47_18595	0.54	+0.7
3,961,596	+		IAI47_18595	0.54	+2.9
3,961,596	+		IAI47_18595	0.54	+2.2
3,961,597	-		IAI47_18595	0.54	+2.5
3,961,597	-		IAI47_18595	0.54	+2.6
3,961,643	-		IAI47_18595	0.59	+2.7
3,961,662	+		IAI47_18595	0.61	+2.7
3,961,662	+		IAI47_18595	0.61	+3.7
3,961,663	-		IAI47_18595	0.61	+3.3
3,961,663	-		IAI47_18595	0.61	+2.3
3,961,663	-		IAI47_18595	0.61	+2.6
3,961,742	-		IAI47_18595	0.69	+3.4
3,961,742	-		IAI47_18595	0.69	+3.2
3,961,773	+		IAI47_18595	0.72	+2.1
3,961,773	+		IAI47_18595	0.72	+1.2
3,961,773	+		IAI47_18595	0.72	+3.0
3,961,773	+		IAI47_18595	0.72	+1.6
3,961,774	-		IAI47_18595	0.72	+3.6
3,961,774	-		IAI47_18595	0.72	+2.1
3,961,782	+		IAI47_18595	0.73	+4.3
3,961,804	+		IAI47_18595	0.75	+2.9
3,961,805	-		IAI47_18595	0.75	+3.9
3,961,805	-		IAI47_18595	0.75	+1.4
3,961,808	+		IAI47_18595	0.75	+4.8
3,961,808	+		IAI47_18595	0.75	+3.2
3,961,809	-		IAI47_18595	0.75	+2.5
3,961,809	-		IAI47_18595	0.75	+1.2
3,961,884	+		IAI47_18595	0.83	+2.8
3,961,885	-		IAI47_18595	0.83	+3.5
3,961,885	-		IAI47_18595	0.83	+2.2
3,961,915	+		IAI47_18595	0.86	+1.6
3,961,915	+		IAI47_18595	0.86	+2.2
3,961,915	+		IAI47_18595	0.86	+5.5
3,961,916	-		IAI47_18595	0.86	+2.2
3,961,916	-		IAI47_18595	0.86	+0.7
3,961,916	-		IAI47_18595	0.86	+1.8
3,961,963	+				+1.0
3,961,964	-				+6.4
3,961,964	-				+2.0
3,962,012	+				+2.8
3,962,012	+				+3.0
3,962,012	+				+2.2
3,962,012	+				+4.8
3,962,013	-				+2.4
3,962,048	-				-0.0
3,962,048	-				+0.5
3,962,048	-				+3.3
3,962,048	-				+1.9
3,962,066	+				-0.5
3,962,066	+				+1.2
3,962,066	+				-0.9
3,962,067	-				-0.4
3,962,067	-				-0.8
3,962,067	-				+3.1
3,962,072	+				+1.4
3,962,146	+		IAI47_18600	0.18	-0.1
3,962,146	+		IAI47_18600	0.18	+0.1
3,962,146	+		IAI47_18600	0.18	+0.8
3,962,185	+		IAI47_18600	0.27	-0.8
3,962,185	+		IAI47_18600	0.27	+0.8
3,962,185	+		IAI47_18600	0.27	-0.5
3,962,185	+		IAI47_18600	0.27	+2.6
3,962,185	+		IAI47_18600	0.27	+2.1
3,962,186	-		IAI47_18600	0.27	-1.3
3,962,186	-		IAI47_18600	0.27	-0.2
3,962,186	-		IAI47_18600	0.27	+1.7
3,962,215	-		IAI47_18600	0.34	-0.0
3,962,240	+		IAI47_18600	0.39	-0.5
3,962,240	+		IAI47_18600	0.39	+1.0
3,962,240	+		IAI47_18600	0.39	+2.0
3,962,240	+		IAI47_18600	0.39	+2.1
3,962,240	+		IAI47_18600	0.39	-0.4
3,962,240	+		IAI47_18600	0.39	+0.2
3,962,240	+		IAI47_18600	0.39	-0.7
3,962,241	-		IAI47_18600	0.40	-2.8
3,962,241	-		IAI47_18600	0.40	-0.8
3,962,241	-		IAI47_18600	0.40	+2.4
3,962,241	-		IAI47_18600	0.40	+0.8
3,962,241	-		IAI47_18600	0.40	-2.5
3,962,241	-		IAI47_18600	0.40	+0.5
3,962,241	-		IAI47_18600	0.40	+1.5
3,962,241	-		IAI47_18600	0.40	-0.8
3,962,241	-		IAI47_18600	0.40	-1.0
3,962,308	+		IAI47_18600	0.55	-1.4
3,962,308	+		IAI47_18600	0.55	+0.4
3,962,308	+		IAI47_18600	0.55	+0.9
3,962,309	-		IAI47_18600	0.55	+0.3
3,962,309	-		IAI47_18600	0.55	+0.5
3,962,309	-		IAI47_18600	0.55	-0.5
3,962,309	-		IAI47_18600	0.55	+0.7
3,962,389	-		IAI47_18600	0.73	+0.2
3,962,389	-		IAI47_18600	0.73	+0.7
3,962,389	-		IAI47_18600	0.73	-0.2
3,962,390	+		IAI47_18600	0.73	+0.9
3,962,391	-		IAI47_18600	0.73	-1.3
3,962,391	-		IAI47_18600	0.73	+0.2
3,962,489	-				-1.3
3,962,489	-				-1.0
3,962,489	-				-1.3
3,962,489	-				+0.4
3,962,509	+				-1.2
3,962,509	+				-1.6
3,962,509	+				-3.0
3,962,509	+				-1.5
3,962,510	-				-0.4
3,962,510	-				+0.3
3,962,510	-				+0.4
3,962,510	-				-0.1
3,962,510	-				+0.2
3,962,510	-				+0.4
3,962,510	-				-0.1
3,962,510	-				-0.9
3,962,510	-				+1.8
3,962,528	-				-1.3
3,962,536	+				-0.1
3,962,537	-				-1.4
3,962,537	-				-0.9
3,962,537	-				+0.6
3,962,537	-				+1.4
3,962,560	+				+0.8
3,962,560	+				-0.4
3,962,560	+				+0.2
3,962,560	+				+0.0
3,962,560	+				+2.3
3,962,561	-				-2.3
3,962,578	+				-1.5
3,962,579	-				-0.9
3,962,620	+				-1.7
3,962,620	+				-2.7
3,962,621	-				-0.8
3,962,621	-				+1.0
3,962,644	+				+1.7
3,962,644	+				-0.2
3,962,645	-				-0.2
3,962,645	-				+1.0
3,962,645	-				+0.3
3,962,645	-				+0.5
3,962,674	+				-0.2
3,962,674	+				+0.5
3,962,674	+				-2.3
3,962,674	+				-0.1
3,962,674	+				-0.2
3,962,674	+				-1.5
3,962,674	+				-1.3
3,962,675	-				+0.4
3,962,675	-				-1.2
3,962,675	-				-0.8
3,962,675	-				-0.0
3,962,677	+				+0.7
3,962,677	+				-3.4
3,962,677	+				+0.5
3,962,677	+				-0.3
3,962,677	+				+1.5
3,962,677	+				+0.1
3,962,677	+				+0.8
3,962,677	+				+0.8
3,962,678	-				-0.1
3,962,678	-				-0.7
3,962,678	-				+0.9
3,962,678	-				-0.9
3,962,678	-				+1.1
3,962,678	-				-0.8
3,962,678	-				+1.1
3,962,688	+				+2.6
3,962,688	+				+0.8
3,962,688	+				+0.7
3,962,689	-				+1.3
3,962,689	-				-1.5
3,962,750	-				-2.1
3,962,750	-				-1.2
3,962,750	-				+1.5
3,962,750	-				-1.0
3,962,759	+				-0.3
3,962,760	-				-0.3
3,962,760	-				+0.5
3,962,770	+				+0.6
3,962,770	+				-1.0
3,962,770	+				-0.6
3,962,770	+				-0.7
3,962,770	+				+0.5
3,962,770	+				-0.3
3,962,770	+				-0.0
3,962,770	+				-0.1
3,962,771	-				-0.8
3,962,780	-				+0.1
3,962,799	-				+0.1
3,962,799	-				-0.0
3,962,799	-				+1.4
3,962,799	-				+0.5
3,962,822	+				+0.1
3,962,823	-				-0.6
3,962,857	+				+0.2
3,962,857	+				+0.2
3,962,891	-		IAI47_18605	0.10	-0.2
3,962,891	-		IAI47_18605	0.10	-0.1
3,962,900	-		IAI47_18605	0.10	-1.6
3,962,943	+		IAI47_18605	0.11	+0.2
3,962,943	+		IAI47_18605	0.11	-1.8
3,962,944	-		IAI47_18605	0.11	+0.2
3,962,944	-		IAI47_18605	0.11	+1.6
3,962,983	+		IAI47_18605	0.12	-1.2
3,962,983	+		IAI47_18605	0.12	-1.8
3,962,983	+		IAI47_18605	0.12	+1.0
3,962,983	+		IAI47_18605	0.12	-0.6
3,962,983	+		IAI47_18605	0.12	-2.1
3,962,983	+		IAI47_18605	0.12	+1.7
3,962,983	+		IAI47_18605	0.12	+0.4
3,962,983	+		IAI47_18605	0.12	-0.1
3,962,984	-		IAI47_18605	0.12	+2.0
3,963,011	+		IAI47_18605	0.13	-1.1
3,963,011	+		IAI47_18605	0.13	-2.9
3,963,011	+		IAI47_18605	0.13	-0.2
3,963,012	-		IAI47_18605	0.13	-1.2
3,963,012	-		IAI47_18605	0.13	-0.1
3,963,037	+		IAI47_18605	0.14	-1.0
3,963,037	+		IAI47_18605	0.14	+0.4
3,963,037	+		IAI47_18605	0.14	-1.9
3,963,037	+		IAI47_18605	0.14	+2.0
3,963,037	+		IAI47_18605	0.14	-0.7
3,963,037	+		IAI47_18605	0.14	+3.2
3,963,037	+		IAI47_18605	0.14	+0.3
3,963,037	+		IAI47_18605	0.14	+1.3
3,963,037	+		IAI47_18605	0.14	-0.4
3,963,037	+		IAI47_18605	0.14	-0.1
3,963,043	+		IAI47_18605	0.14	-0.3
3,963,043	+		IAI47_18605	0.14	+0.1
3,963,044	-		IAI47_18605	0.14	-1.7
3,963,044	-		IAI47_18605	0.14	+0.5
3,963,061	+		IAI47_18605	0.14	-0.4
3,963,061	+		IAI47_18605	0.14	+0.9
3,963,061	+		IAI47_18605	0.14	+1.2
3,963,061	+		IAI47_18605	0.14	+0.5
3,963,061	+		IAI47_18605	0.14	+1.9
3,963,061	+		IAI47_18605	0.14	+1.7
3,963,061	+		IAI47_18605	0.14	+0.9
3,963,062	-		IAI47_18605	0.15	-0.9
3,963,062	-		IAI47_18605	0.15	+1.3
3,963,062	-		IAI47_18605	0.15	-0.0
3,963,062	-		IAI47_18605	0.15	+0.7
3,963,062	-		IAI47_18605	0.15	-0.1
3,963,062	-		IAI47_18605	0.15	+0.6
3,963,062	-		IAI47_18605	0.15	-0.8
3,963,062	-		IAI47_18605	0.15	+0.2
3,963,062	-		IAI47_18605	0.15	-1.3
3,963,085	+		IAI47_18605	0.15	-0.2
3,963,085	+		IAI47_18605	0.15	-1.6
3,963,085	+		IAI47_18605	0.15	+0.7
3,963,085	+		IAI47_18605	0.15	-1.6
3,963,085	+		IAI47_18605	0.15	-0.5
3,963,086	-		IAI47_18605	0.15	-1.4
3,963,086	-		IAI47_18605	0.15	+1.2
3,963,090	+		IAI47_18605	0.15	-1.4
3,963,090	+		IAI47_18605	0.15	-0.4
3,963,090	+		IAI47_18605	0.15	-1.6
3,963,091	-		IAI47_18605	0.15	-0.8
3,963,091	-		IAI47_18605	0.15	-0.1
3,963,091	-		IAI47_18605	0.15	-1.6
3,963,091	-		IAI47_18605	0.15	+0.8
3,963,091	-		IAI47_18605	0.15	-0.3
3,963,091	-		IAI47_18605	0.15	+0.6
3,963,091	-		IAI47_18605	0.15	+0.2
3,963,091	-		IAI47_18605	0.15	+1.0
3,963,091	-		IAI47_18605	0.15	-0.8
3,963,091	-		IAI47_18605	0.15	-1.3
3,963,146	+		IAI47_18605	0.17	+2.4
3,963,146	+		IAI47_18605	0.17	+0.0
3,963,146	+		IAI47_18605	0.17	-0.6
3,963,146	+		IAI47_18605	0.17	-1.2
3,963,163	+		IAI47_18605	0.17	+0.8
3,963,164	-		IAI47_18605	0.17	-0.2
3,963,164	-		IAI47_18605	0.17	+1.6
3,963,164	-		IAI47_18605	0.17	+0.3
3,963,164	-		IAI47_18605	0.17	-0.1
3,963,164	-		IAI47_18605	0.17	-1.9
3,963,164	-		IAI47_18605	0.17	+0.5
3,963,176	+		IAI47_18605	0.18	-1.8
3,963,177	-		IAI47_18605	0.18	+1.0
3,963,183	-		IAI47_18605	0.18	+3.4
3,963,183	-		IAI47_18605	0.18	-1.3
3,963,183	-		IAI47_18605	0.18	+0.0
3,963,263	+		IAI47_18605	0.20	+0.1
3,963,264	-		IAI47_18605	0.20	+1.4
3,963,264	-		IAI47_18605	0.20	+0.3
3,963,264	-		IAI47_18605	0.20	-0.2
3,963,305	+		IAI47_18605	0.21	+0.9
3,963,305	+		IAI47_18605	0.21	-0.9
3,963,305	+		IAI47_18605	0.21	-2.3
3,963,305	+		IAI47_18605	0.21	-0.8
3,963,305	+		IAI47_18605	0.21	+1.6
3,963,306	-		IAI47_18605	0.21	-1.0
3,963,306	-		IAI47_18605	0.21	+0.5
3,963,306	-		IAI47_18605	0.21	+0.1
3,963,306	-		IAI47_18605	0.21	+0.1
3,963,306	-		IAI47_18605	0.21	+0.1
3,963,307	+		IAI47_18605	0.21	+0.2
3,963,307	+		IAI47_18605	0.21	+1.0
3,963,308	-		IAI47_18605	0.21	+1.7
3,963,308	-		IAI47_18605	0.21	-0.9
3,963,308	-		IAI47_18605	0.21	+2.1
3,963,501	-		IAI47_18605	0.26	+0.2
3,963,569	+		IAI47_18605	0.28	+1.0
3,963,569	+		IAI47_18605	0.28	-1.5
3,963,570	-		IAI47_18605	0.28	-0.2
3,963,570	-		IAI47_18605	0.28	+0.5
3,963,570	-		IAI47_18605	0.28	-0.6
3,963,659	+		IAI47_18605	0.30	-0.4
3,963,687	-		IAI47_18605	0.31	-0.9
3,963,784	+		IAI47_18605	0.33	+0.4
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3,967,198	+		IAI47_18610	0.30	-0.8
3,967,198	+		IAI47_18610	0.30	-0.9
3,967,199	-		IAI47_18610	0.30	+0.3
3,967,199	-		IAI47_18610	0.30	-0.2
3,967,199	-		IAI47_18610	0.30	-1.3
3,967,199	-		IAI47_18610	0.30	-0.6
3,967,199	-		IAI47_18610	0.30	-0.6
3,967,199	-		IAI47_18610	0.30	-0.6
3,967,218	-		IAI47_18610	0.30	-0.5
3,967,218	-		IAI47_18610	0.30	-0.5
3,967,246	+		IAI47_18610	0.31	+0.0
3,967,246	+		IAI47_18610	0.31	+0.9
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3,967,249	+		IAI47_18610	0.31	+0.0
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3,967,257	+		IAI47_18610	0.32	-0.0
3,967,257	+		IAI47_18610	0.32	+1.2
3,967,257	+		IAI47_18610	0.32	+0.9
3,967,258	-		IAI47_18610	0.32	+1.9
3,967,281	+		IAI47_18610	0.33	+0.7
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3,967,290	+		IAI47_18610	0.33	-0.4
3,967,311	+		IAI47_18610	0.34	-0.1
3,967,312	-		IAI47_18610	0.34	+0.1
3,967,312	-		IAI47_18610	0.34	-0.6
3,967,312	-		IAI47_18610	0.34	-0.9