Strain Fitness in Pantoea sp. MT58 around IAI47_18590

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,957,827	+		IAI47_18585	0.40	+0.8
3,957,827	+		IAI47_18585	0.40	-1.0
3,957,827	+		IAI47_18585	0.40	+0.9
3,957,827	+		IAI47_18585	0.40	-1.5
3,957,827	+		IAI47_18585	0.40	-2.0
3,957,827	+		IAI47_18585	0.40	+1.1
3,957,827	+		IAI47_18585	0.40	-0.6
3,957,828	-		IAI47_18585	0.40	+2.6
3,957,828	-		IAI47_18585	0.40	+0.1
3,957,828	-		IAI47_18585	0.40	-1.1
3,957,828	-		IAI47_18585	0.40	+0.6
3,957,828	-		IAI47_18585	0.40	-0.4
3,957,828	-		IAI47_18585	0.40	+0.3
3,957,828	-		IAI47_18585	0.40	+0.9
3,957,828	-		IAI47_18585	0.40	+0.4
3,957,831	+		IAI47_18585	0.41	+1.0
3,957,831	+		IAI47_18585	0.41	-0.4
3,957,831	+		IAI47_18585	0.41	+2.0
3,957,832	-		IAI47_18585	0.41	-0.1
3,957,832	-		IAI47_18585	0.41	+2.1
3,957,832	-		IAI47_18585	0.41	-2.2
3,957,832	-		IAI47_18585	0.41	-0.4
3,957,832	-		IAI47_18585	0.41	+0.1
3,957,832	-		IAI47_18585	0.41	-0.9
3,957,907	+		IAI47_18585	0.46	-0.4
3,957,907	+		IAI47_18585	0.46	-1.2
3,957,907	+		IAI47_18585	0.46	-1.2
3,957,907	+		IAI47_18585	0.46	+1.1
3,957,907	+		IAI47_18585	0.46	-0.9
3,957,907	+		IAI47_18585	0.46	-0.5
3,957,908	-		IAI47_18585	0.47	+1.8
3,957,908	-		IAI47_18585	0.47	+1.0
3,957,908	-		IAI47_18585	0.47	-1.5
3,957,908	-		IAI47_18585	0.47	-0.1
3,957,908	-		IAI47_18585	0.47	-0.8
3,957,914	+		IAI47_18585	0.47	+0.6
3,957,916	+		IAI47_18585	0.47	-0.7
3,957,917	-		IAI47_18585	0.47	-1.3
3,957,918	+		IAI47_18585	0.47	+1.3
3,957,918	+		IAI47_18585	0.47	-2.0
3,957,918	+		IAI47_18585	0.47	-0.2
3,957,918	+		IAI47_18585	0.47	+1.9
3,957,918	+		IAI47_18585	0.47	+1.0
3,957,918	+		IAI47_18585	0.47	+0.3
3,957,919	-		IAI47_18585	0.47	-0.2
3,957,919	-		IAI47_18585	0.47	-1.3
3,957,919	-		IAI47_18585	0.47	+0.1
3,957,919	-		IAI47_18585	0.47	-0.5
3,957,919	-		IAI47_18585	0.47	+0.5
3,957,919	-		IAI47_18585	0.47	+1.8
3,957,928	+		IAI47_18585	0.48	-1.0
3,957,929	-		IAI47_18585	0.48	+1.3
3,957,929	-		IAI47_18585	0.48	-0.2
3,957,929	-		IAI47_18585	0.48	+0.2
3,957,966	+		IAI47_18585	0.51	-0.1
3,957,966	+		IAI47_18585	0.51	-0.3
3,957,966	+		IAI47_18585	0.51	-0.4
3,957,970	+		IAI47_18585	0.51	+0.7
3,958,004	+		IAI47_18585	0.54	+2.0
3,958,033	+		IAI47_18585	0.56	-0.3
3,958,034	-		IAI47_18585	0.56	-0.8
3,958,034	-		IAI47_18585	0.56	+1.4
3,958,034	-		IAI47_18585	0.56	-0.7
3,958,034	-		IAI47_18585	0.56	+4.1
3,958,094	-		IAI47_18585	0.61	-0.1
3,958,139	+		IAI47_18585	0.64	-2.1
3,958,139	+		IAI47_18585	0.64	-1.5
3,958,140	-		IAI47_18585	0.64	-0.0
3,958,140	-		IAI47_18585	0.64	-1.1
3,958,140	-		IAI47_18585	0.64	-0.3
3,958,140	-		IAI47_18585	0.64	+1.0
3,958,140	-		IAI47_18585	0.64	+1.8
3,958,140	-		IAI47_18585	0.64	-0.5
3,958,140	-		IAI47_18585	0.64	-0.1
3,958,189	+		IAI47_18585	0.68	-1.3
3,958,189	+		IAI47_18585	0.68	-1.4
3,958,190	-		IAI47_18585	0.68	-0.4
3,958,192	+		IAI47_18585	0.69	+2.2
3,958,192	+		IAI47_18585	0.69	-1.6
3,958,193	-		IAI47_18585	0.69	-0.7
3,958,193	-		IAI47_18585	0.69	+0.8
3,958,194	-		IAI47_18585	0.69	-1.0
3,958,239	+		IAI47_18585	0.72	-0.6
3,958,239	+		IAI47_18585	0.72	+1.8
3,958,239	+		IAI47_18585	0.72	-0.4
3,958,240	-		IAI47_18585	0.72	-0.1
3,958,240	-		IAI47_18585	0.72	+2.4
3,958,359	+		IAI47_18585	0.81	-1.4
3,958,360	-		IAI47_18585	0.82	-0.9
3,958,360	-		IAI47_18585	0.82	+0.7
3,958,389	-		IAI47_18585	0.84	+1.9
3,958,432	+		IAI47_18585	0.87	+0.4
3,958,466	+		IAI47_18585	0.90	+1.7
3,958,467	-		IAI47_18585	0.90	-1.5
3,958,467	-		IAI47_18585	0.90	-0.2
3,958,467	-		IAI47_18585	0.90	-1.1
3,958,471	+				-0.1
3,958,471	+				+0.3
3,958,472	-				-0.1
3,958,472	-				+0.2
3,958,472	-				+0.3
3,958,472	-				-0.2
3,958,472	-				-0.1
3,958,508	+				-0.3
3,958,530	-				-0.7
3,958,569	+				+0.9
3,958,569	+				+0.3
3,958,570	-				+0.8
3,958,644	-				-1.4
3,958,669	-				+0.8
3,958,682	-				-0.4
3,958,682	-				-0.0
3,958,693	-				+0.4
3,958,712	+				-1.7
3,958,712	+				-0.1
3,958,713	-				+2.8
3,958,713	-				+2.0
3,958,715	+				-0.8
3,958,715	+				-0.9
3,958,715	+				+0.8
3,958,751	+				+0.1
3,958,752	-				-2.0
3,958,752	-				-0.2
3,958,824	+				-0.2
3,958,861	+				+0.3
3,958,862	-				+0.4
3,958,890	+				+3.1
3,958,890	+				-0.6
3,958,890	+				-1.0
3,958,890	+				+0.3
3,958,891	-				-1.8
3,958,891	-				-0.4
3,958,891	-				-1.8
3,958,896	+				-0.1
3,958,896	+				+0.9
3,958,897	-				+0.0
3,958,897	-				+0.6
3,958,897	-				+2.1
3,958,897	-				-0.0
3,958,984	+				+0.3
3,958,985	-				+1.1
3,958,985	-				+0.2
3,959,072	+		IAI47_18590	0.12	-0.0
3,959,100	+		IAI47_18590	0.14	-0.8
3,959,100	+		IAI47_18590	0.14	-0.3
3,959,100	+		IAI47_18590	0.14	-0.6
3,959,100	+		IAI47_18590	0.14	-0.3
3,959,100	+		IAI47_18590	0.14	-0.9
3,959,101	-		IAI47_18590	0.14	+1.0
3,959,101	-		IAI47_18590	0.14	+0.4
3,959,101	-		IAI47_18590	0.14	+0.9
3,959,101	-		IAI47_18590	0.14	-0.3
3,959,101	-		IAI47_18590	0.14	+0.1
3,959,101	-		IAI47_18590	0.14	-1.2
3,959,101	-		IAI47_18590	0.14	+0.9
3,959,115	+		IAI47_18590	0.15	+0.9
3,959,115	+		IAI47_18590	0.15	-1.1
3,959,116	-		IAI47_18590	0.15	+2.5
3,959,318	-		IAI47_18590	0.25	-1.7
3,959,338	+		IAI47_18590	0.26	-0.6
3,959,338	+		IAI47_18590	0.26	-0.8
3,959,338	+		IAI47_18590	0.26	+0.8
3,959,339	+				-2.1
3,959,339	-		IAI47_18590	0.26	-1.1
3,959,339	-		IAI47_18590	0.26	-1.4
3,959,339	-		IAI47_18590	0.26	+1.7
3,959,399	+		IAI47_18590	0.29	-0.9
3,959,399	+		IAI47_18590	0.29	+1.0
3,959,400	-		IAI47_18590	0.29	+0.2
3,959,400	-		IAI47_18590	0.29	-1.5
3,959,400	-		IAI47_18590	0.29	-0.6
3,959,400	-		IAI47_18590	0.29	+1.0
3,959,408	-		IAI47_18590	0.29	+1.2
3,959,437	+		IAI47_18590	0.31	-0.7
3,959,437	+		IAI47_18590	0.31	-1.1
3,959,449	+		IAI47_18590	0.31	-1.4
3,959,450	-		IAI47_18590	0.31	+0.0
3,959,457	+		IAI47_18590	0.32	+0.4
3,959,457	+		IAI47_18590	0.32	+0.7
3,959,457	+		IAI47_18590	0.32	-0.8
3,959,458	-		IAI47_18590	0.32	-2.0
3,959,458	-		IAI47_18590	0.32	+3.2
3,959,458	-		IAI47_18590	0.32	-0.3
3,959,752	+		IAI47_18590	0.46	+1.6
3,959,753	-		IAI47_18590	0.46	-1.2
3,959,774	+		IAI47_18590	0.47	+0.9
3,959,774	+		IAI47_18590	0.47	-0.6
3,959,774	+		IAI47_18590	0.47	+0.7
3,959,774	+		IAI47_18590	0.47	+0.5
3,959,774	+		IAI47_18590	0.47	-0.8
3,959,774	+		IAI47_18590	0.47	-0.0
3,959,774	+		IAI47_18590	0.47	+0.5
3,959,775	-		IAI47_18590	0.47	-0.5
3,959,775	-		IAI47_18590	0.47	+1.7
3,959,775	-		IAI47_18590	0.47	+0.7
3,959,775	-		IAI47_18590	0.47	-1.0
3,959,775	-		IAI47_18590	0.47	+0.2
3,959,775	-		IAI47_18590	0.47	-0.3
3,959,809	+		IAI47_18590	0.49	+1.0
3,959,809	+		IAI47_18590	0.49	+0.7
3,959,810	-		IAI47_18590	0.49	+0.7
3,959,855	+		IAI47_18590	0.51	+0.1
3,959,855	+		IAI47_18590	0.51	+0.3
3,959,856	-		IAI47_18590	0.51	+0.6
3,959,856	-		IAI47_18590	0.51	+1.5
3,959,896	+		IAI47_18590	0.53	-1.3
3,959,896	+		IAI47_18590	0.53	-0.5
3,959,896	+		IAI47_18590	0.53	+1.2
3,959,896	+		IAI47_18590	0.53	-0.6
3,959,896	+		IAI47_18590	0.53	-0.2
3,959,896	+		IAI47_18590	0.53	+3.4
3,959,896	+		IAI47_18590	0.53	+1.1
3,959,896	+		IAI47_18590	0.53	-1.1
3,959,896	+		IAI47_18590	0.53	+0.8
3,959,896	+		IAI47_18590	0.53	+1.4
3,959,897	-		IAI47_18590	0.54	+0.6
3,959,897	-		IAI47_18590	0.54	+0.5
3,959,897	-		IAI47_18590	0.54	+0.3
3,959,897	-		IAI47_18590	0.54	-0.2
3,959,911	+		IAI47_18590	0.54	-0.6
3,959,912	-		IAI47_18590	0.54	-0.6
3,959,914	+		IAI47_18590	0.54	-0.6
3,959,914	+		IAI47_18590	0.54	+3.1
3,959,915	-		IAI47_18590	0.54	-0.3
3,959,915	-		IAI47_18590	0.54	-1.0
3,959,915	-		IAI47_18590	0.54	+0.7
3,959,948	-		IAI47_18590	0.56	-2.1
3,959,978	-		IAI47_18590	0.58	-1.7
3,960,159	+		IAI47_18590	0.67	-0.4
3,960,159	+		IAI47_18590	0.67	-0.6
3,960,159	+		IAI47_18590	0.67	-0.7
3,960,159	+		IAI47_18590	0.67	-1.2
3,960,159	+		IAI47_18590	0.67	+0.4
3,960,160	-		IAI47_18590	0.67	-1.0
3,960,160	-		IAI47_18590	0.67	-1.0
3,960,160	-		IAI47_18590	0.67	-0.3
3,960,160	-		IAI47_18590	0.67	-0.5
3,960,163	+		IAI47_18590	0.67	-1.4
3,960,163	+		IAI47_18590	0.67	-1.0
3,960,163	+		IAI47_18590	0.67	+2.7
3,960,164	-		IAI47_18590	0.67	-0.8
3,960,164	-		IAI47_18590	0.67	-0.6
3,960,164	-		IAI47_18590	0.67	+0.8
3,960,164	-		IAI47_18590	0.67	+1.0
3,960,175	+		IAI47_18590	0.67	+0.7
3,960,296	-		IAI47_18590	0.73	-0.7
3,960,342	+		IAI47_18590	0.76	-0.7
3,960,342	+		IAI47_18590	0.76	-1.8
3,960,342	+		IAI47_18590	0.76	+0.4
3,960,342	+		IAI47_18590	0.76	-0.1
3,960,342	+		IAI47_18590	0.76	+2.4
3,960,343	-		IAI47_18590	0.76	+3.2
3,960,343	-		IAI47_18590	0.76	+2.4
3,960,343	-		IAI47_18590	0.76	+2.0
3,960,343	-		IAI47_18590	0.76	+0.0
3,960,343	-		IAI47_18590	0.76	+3.3
3,960,349	+		IAI47_18590	0.76	-0.6
3,960,349	+		IAI47_18590	0.76	+2.2
3,960,349	+		IAI47_18590	0.76	-2.3
3,960,350	-		IAI47_18590	0.76	-0.9
3,960,376	+		IAI47_18590	0.77	-0.2
3,960,376	+		IAI47_18590	0.77	+0.5
3,960,400	+		IAI47_18590	0.79	+0.2
3,960,400	+		IAI47_18590	0.79	-0.0
3,960,400	+		IAI47_18590	0.79	-0.8
3,960,418	-		IAI47_18590	0.79	+0.6
3,960,418	-		IAI47_18590	0.79	-0.4
3,960,418	-		IAI47_18590	0.79	-2.4
3,960,418	-		IAI47_18590	0.79	-0.2
3,960,456	+		IAI47_18590	0.81	+1.1
3,960,457	-		IAI47_18590	0.81	+0.7
3,960,457	-		IAI47_18590	0.81	-0.0
3,960,457	-		IAI47_18590	0.81	-1.3
3,960,470	-		IAI47_18590	0.82	-0.3
3,960,584	+		IAI47_18590	0.88	+1.7
3,960,584	+		IAI47_18590	0.88	+0.8
3,960,585	-		IAI47_18590	0.88	+1.4
3,960,616	+		IAI47_18590	0.89	-3.0
3,960,616	+		IAI47_18590	0.89	-1.6
3,960,617	-		IAI47_18590	0.89	+2.1
3,960,617	-		IAI47_18590	0.89	-2.3
3,960,634	+				+0.2
3,960,635	-				-0.5
3,960,635	-				+0.2
3,960,685	+				-0.2
3,960,706	-				+0.5
3,960,751	+				+1.2
3,960,757	+				+0.7
3,960,757	+				+0.2
3,960,757	+				-0.6
3,960,757	+				+1.7
3,960,758	-				+4.2
3,960,758	-				+2.2
3,960,758	-				-2.6
3,960,758	-				+0.2
3,960,758	-				+0.7
3,960,769	+				-1.0
3,960,770	-				+1.9
3,960,804	-				-0.9
3,960,804	-				+1.1
3,960,808	+				-1.3
3,960,808	+				-0.3
3,960,808	+				+2.6
3,960,808	+				+0.0
3,960,808	+				+1.2
3,960,809	-				+0.5
3,960,821	+				+1.0
3,960,821	+				-1.0
3,960,821	+				-1.6
3,960,821	+				+0.0
3,960,862	+				+0.1
3,960,862	+				-2.3
3,960,862	+				+0.2
3,960,863	-				+0.5
3,960,863	-				-0.5
3,960,863	-				+1.8
3,960,863	-				-0.9
3,960,863	-				-2.2
3,960,872	+				-0.5
3,960,872	+				-0.9
3,960,872	+				+1.9
3,960,872	+				-1.7
3,960,872	+				-0.5
3,960,872	+				+0.2
3,960,872	+				+0.1
3,960,873	-				-0.9
3,960,873	-				+2.5
3,960,873	-				-3.3
3,960,873	-				+1.1
3,960,873	-				+2.6
3,960,873	-				-1.6
3,960,873	-				-1.9
3,960,873	-				-0.2
3,960,887	+				-0.3
3,960,887	+				+0.2
3,960,887	+				+0.1
3,960,887	+				+0.9
3,960,887	+				+2.5
3,960,887	+				+1.9
3,960,888	-				+0.9
3,960,888	-				-0.0
3,960,888	-				+0.1
3,960,888	-				-2.4
3,960,888	-				-0.8
3,960,888	-				-0.4
3,960,888	-				+0.0
3,960,888	-				+0.2
3,960,888	-				+1.0
3,960,888	-				+0.7
3,960,888	-				-1.1
3,960,888	-				+0.3
3,960,890	-				-0.2
3,960,890	-				+1.3
3,960,901	+				+0.7
3,960,911	-				+0.0
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