Strain Fitness in Pantoea sp. MT58 around IAI47_17840

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,788,092	+				+0.2
3,789,024	+				-0.2
3,789,052	-				+0.2
3,789,052	-				-0.6
3,789,052	-				-1.6
3,789,088	+				+1.1
3,789,126	+				-0.9
3,789,127	-				-1.7
3,789,212	+		IAI47_17840	0.20	-1.8
3,789,212	+		IAI47_17840	0.20	+1.8
3,789,212	+		IAI47_17840	0.20	-0.5
3,789,261	+		IAI47_17840	0.28	-0.7
3,789,278	+		IAI47_17840	0.31	+0.1
3,789,278	+		IAI47_17840	0.31	-1.0
3,789,279	-		IAI47_17840	0.31	+0.4
3,789,279	-		IAI47_17840	0.31	+0.1
3,789,279	-		IAI47_17840	0.31	-0.6
3,789,302	+		IAI47_17840	0.35	-0.1
3,789,302	+		IAI47_17840	0.35	-0.9
3,789,303	-		IAI47_17840	0.35	-0.7
3,789,312	+		IAI47_17840	0.37	-0.6
3,789,312	+		IAI47_17840	0.37	+0.0
3,789,312	+		IAI47_17840	0.37	+0.7
3,789,312	+		IAI47_17840	0.37	-0.6
3,789,312	+		IAI47_17840	0.37	-0.7
3,789,313	-		IAI47_17840	0.37	+0.4
3,789,313	-		IAI47_17840	0.37	-1.9
3,789,313	-		IAI47_17840	0.37	+1.2
3,789,313	-		IAI47_17840	0.37	-0.2
3,789,313	-		IAI47_17840	0.37	+0.0
3,789,313	-		IAI47_17840	0.37	+1.4
3,789,313	-		IAI47_17840	0.37	+1.1
3,789,313	-		IAI47_17840	0.37	-1.9
3,789,313	-		IAI47_17840	0.37	+0.2
3,789,313	-		IAI47_17840	0.37	-0.8
3,789,313	-		IAI47_17840	0.37	-0.1
3,789,318	+		IAI47_17840	0.38	+0.4
3,789,318	+		IAI47_17840	0.38	-1.0
3,789,318	+		IAI47_17840	0.38	-1.1
3,789,318	+		IAI47_17840	0.38	-2.2
3,789,318	+		IAI47_17840	0.38	+0.1
3,789,319	-		IAI47_17840	0.38	+2.1
3,789,319	-		IAI47_17840	0.38	-0.0
3,789,319	-		IAI47_17840	0.38	-0.2
3,789,320	+		IAI47_17840	0.38	+0.6
3,789,320	+		IAI47_17840	0.38	-0.4
3,789,321	-		IAI47_17840	0.38	-0.7
3,789,321	-		IAI47_17840	0.38	+0.5
3,789,321	-		IAI47_17840	0.38	-0.4
3,789,361	+		IAI47_17840	0.45	-0.2
3,789,361	+		IAI47_17840	0.45	+0.1
3,789,361	+		IAI47_17840	0.45	-0.8
3,789,361	+		IAI47_17840	0.45	+1.4
3,789,361	+		IAI47_17840	0.45	+0.9
3,789,361	+		IAI47_17840	0.45	+0.8
3,789,361	+		IAI47_17840	0.45	+1.1
3,789,361	+		IAI47_17840	0.45	-0.4
3,789,361	+		IAI47_17840	0.45	-1.0
3,789,362	-		IAI47_17840	0.45	-1.3
3,789,362	-		IAI47_17840	0.45	+0.3
3,789,362	-		IAI47_17840	0.45	+1.1
3,789,362	-		IAI47_17840	0.45	-0.5
3,789,362	-		IAI47_17840	0.45	-0.9
3,789,362	-		IAI47_17840	0.45	-1.4
3,789,362	-		IAI47_17840	0.45	+1.0
3,789,371	+		IAI47_17840	0.46	+1.8
3,789,372	-		IAI47_17840	0.46	-0.9
3,789,411	-		IAI47_17840	0.53	+0.0
3,789,446	+		IAI47_17840	0.58	+0.2
3,789,446	+		IAI47_17840	0.58	-1.2
3,789,447	-		IAI47_17840	0.59	-1.2
3,789,452	+		IAI47_17840	0.59	+1.4
3,789,487	+		IAI47_17840	0.65	+0.8
3,789,488	-		IAI47_17840	0.65	-1.5
3,789,541	+		IAI47_17840	0.74	+1.5
3,789,541	+		IAI47_17840	0.74	-0.8
3,789,542	-		IAI47_17840	0.74	+0.1
3,789,542	-		IAI47_17840	0.74	-0.8
3,789,542	-		IAI47_17840	0.74	-0.3
3,789,542	-		IAI47_17840	0.74	+0.0
3,789,602	+		IAI47_17840	0.84	+0.4
3,789,602	+		IAI47_17840	0.84	-1.4
3,789,602	+		IAI47_17840	0.84	+0.1
3,789,602	+		IAI47_17840	0.84	+0.3
3,789,602	+		IAI47_17840	0.84	-1.3
3,789,603	-		IAI47_17840	0.84	+0.8
3,789,603	-		IAI47_17840	0.84	+0.2
3,789,603	-		IAI47_17840	0.84	+0.3
3,789,603	-		IAI47_17840	0.84	-0.1
3,789,696	-				+0.7
3,789,696	-				-1.6
3,789,734	+				-1.8
3,789,808	-				+0.5
3,789,808	-				-1.3
3,789,861	+				+0.4
3,789,861	+				+0.7
3,789,862	-				+1.6
3,789,862	-				+0.2
3,789,869	-				-0.9
3,789,869	-				-1.4
3,789,878	+				+0.6
3,789,890	+				+0.2
3,789,891	-				+0.3
3,789,901	-				+0.2
3,789,901	-				-1.1
3,789,944	+				-2.2
3,790,000	+		IAI47_17845	0.12	+0.9
3,790,000	+		IAI47_17845	0.12	+1.0
3,790,001	-		IAI47_17845	0.12	+0.3
3,790,001	-		IAI47_17845	0.12	-0.5
3,790,001	-		IAI47_17845	0.12	+1.0
3,790,003	+		IAI47_17845	0.12	+0.8
3,790,004	-		IAI47_17845	0.13	-1.0
3,790,045	+		IAI47_17845	0.21	-1.4
3,790,045	+		IAI47_17845	0.21	+1.2
3,790,046	-		IAI47_17845	0.21	+0.8
3,790,046	-		IAI47_17845	0.21	-1.3
3,790,046	-		IAI47_17845	0.21	+1.2
3,790,057	+		IAI47_17845	0.24	-0.5
3,790,057	+		IAI47_17845	0.24	+0.2
3,790,057	+		IAI47_17845	0.24	-0.3
3,790,058	-		IAI47_17845	0.24	-1.4
3,790,095	+		IAI47_17845	0.32	+0.4
3,790,095	+		IAI47_17845	0.32	-0.1
3,790,096	-		IAI47_17845	0.32	+1.4
3,790,103	+		IAI47_17845	0.33	-1.0
3,790,103	+		IAI47_17845	0.33	+0.1
3,790,103	+		IAI47_17845	0.33	-0.1
3,790,104	-		IAI47_17845	0.34	-1.4
3,790,104	-		IAI47_17845	0.34	+0.3
3,790,104	-		IAI47_17845	0.34	-0.3
3,790,104	-		IAI47_17845	0.34	-0.5
3,790,104	-		IAI47_17845	0.34	+0.4
3,790,127	+		IAI47_17845	0.38	-0.6
3,790,181	+		IAI47_17845	0.50	+1.0
3,790,181	+		IAI47_17845	0.50	+0.3
3,790,181	+		IAI47_17845	0.50	+0.6
3,790,182	-		IAI47_17845	0.50	+0.6
3,790,182	-		IAI47_17845	0.50	-2.5
3,790,197	+		IAI47_17845	0.53	+2.2
3,790,197	+		IAI47_17845	0.53	-2.1
3,790,198	-		IAI47_17845	0.53	-0.1
3,790,201	+		IAI47_17845	0.54	+1.0
3,790,201	+		IAI47_17845	0.54	+0.2
3,790,201	+		IAI47_17845	0.54	-1.5
3,790,202	-		IAI47_17845	0.54	+0.8
3,790,202	-		IAI47_17845	0.54	-0.0
3,790,217	-		IAI47_17845	0.57	-1.2
3,790,281	+		IAI47_17845	0.70	+0.2
3,790,281	+		IAI47_17845	0.70	+0.2
3,790,282	-		IAI47_17845	0.71	-0.8
3,790,299	+		IAI47_17845	0.74	-0.6
3,790,300	-		IAI47_17845	0.74	-1.4
3,790,372	-		IAI47_17845	0.89	+1.4
3,790,378	+				+0.2
3,790,379	-				-0.5
3,790,381	+				+1.0
3,790,381	+				+0.3
3,790,382	-				-0.3
3,790,382	-				+1.5
3,790,382	-				+1.4
3,790,382	-				+1.5
3,790,382	-				+1.2
3,790,382	-				-0.1
3,790,395	+				-1.1
3,790,396	-				+0.2
3,790,403	+				-0.4
3,790,403	+				-1.0
3,790,412	-				-0.6
3,790,412	-				-0.4
3,790,453	+				+0.8
3,790,453	+				+2.1
3,790,453	+				-0.1
3,790,454	-				+1.0
3,790,456	+				+0.3
3,790,456	+				-1.3
3,790,456	+				-0.5
3,790,456	+				-1.6
3,790,457	-				+0.6
3,790,457	-				-0.1
3,790,462	+				-2.3
3,790,463	-				+0.8
3,790,494	-				+0.0
3,790,494	-				+2.5
3,790,553	+				-0.9
3,790,565	+				+0.7
3,790,565	+				+0.1
3,790,566	-				+0.3
3,790,566	-				+1.4