Strain Fitness in Pantoea sp. MT58 around IAI47_14975

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,157,958	+		IAI47_14970	0.64	+0.2
3,157,959	-		IAI47_14970	0.64	+0.5
3,157,959	-		IAI47_14970	0.64	+0.4
3,157,968	+		IAI47_14970	0.65	-1.5
3,158,018	+		IAI47_14970	0.66	-0.7
3,158,020	+		IAI47_14970	0.66	-0.1
3,158,020	+		IAI47_14970	0.66	-0.4
3,158,020	+		IAI47_14970	0.66	-0.4
3,158,021	-		IAI47_14970	0.66	-0.1
3,158,021	-		IAI47_14970	0.66	+1.9
3,158,021	-		IAI47_14970	0.66	-2.4
3,158,301	+		IAI47_14970	0.75	+0.0
3,158,302	-		IAI47_14970	0.75	-1.6
3,158,393	-		IAI47_14970	0.78	-0.5
3,158,393	-		IAI47_14970	0.78	+0.9
3,158,433	+		IAI47_14970	0.80	+0.5
3,158,433	+		IAI47_14970	0.80	+1.9
3,158,433	+		IAI47_14970	0.80	-0.4
3,158,434	-		IAI47_14970	0.80	-1.9
3,158,515	+		IAI47_14970	0.82	+1.0
3,158,515	+		IAI47_14970	0.82	+0.9
3,158,515	+		IAI47_14970	0.82	-0.8
3,158,515	+		IAI47_14970	0.82	+0.9
3,158,515	+		IAI47_14970	0.82	-0.7
3,158,516	-		IAI47_14970	0.82	+0.2
3,158,516	-		IAI47_14970	0.82	+0.5
3,158,516	-		IAI47_14970	0.82	+0.3
3,158,540	+		IAI47_14970	0.83	-1.2
3,158,540	+		IAI47_14970	0.83	+0.6
3,158,540	+		IAI47_14970	0.83	+1.1
3,158,541	-		IAI47_14970	0.83	-0.8
3,158,665	+		IAI47_14970	0.87	-2.1
3,158,665	+		IAI47_14970	0.87	+0.0
3,158,666	-		IAI47_14970	0.87	+0.8
3,158,723	+		IAI47_14970	0.89	-1.5
3,158,723	+		IAI47_14970	0.89	+1.2
3,158,723	+		IAI47_14970	0.89	+2.1
3,158,723	+		IAI47_14970	0.89	+1.3
3,158,724	-		IAI47_14970	0.89	+0.5
3,158,724	-		IAI47_14970	0.89	+0.0
3,158,734	+		IAI47_14970	0.89	-1.3
3,158,769	+				-0.5
3,158,850	-				+1.0
3,158,850	-				+0.1
3,158,850	-				+0.5
3,158,972	+				+0.7
3,158,973	-				+0.5
3,159,070	+				+0.0
3,159,071	-				+0.6
3,159,071	-				+1.6
3,159,168	+		IAI47_14975	0.17	+0.4
3,159,168	+		IAI47_14975	0.17	+0.2
3,159,168	+		IAI47_14975	0.17	-0.5
3,159,168	+		IAI47_14975	0.17	+0.3
3,159,168	+		IAI47_14975	0.17	-1.8
3,159,168	+		IAI47_14975	0.17	-1.2
3,159,169	-		IAI47_14975	0.17	+0.7
3,159,169	-		IAI47_14975	0.17	-1.0
3,159,169	-		IAI47_14975	0.17	+1.7
3,159,172	+		IAI47_14975	0.17	+0.9
3,159,172	+		IAI47_14975	0.17	+2.6
3,159,172	+		IAI47_14975	0.17	+1.2
3,159,173	-		IAI47_14975	0.17	-0.5
3,159,173	-		IAI47_14975	0.17	-1.5
3,159,173	-		IAI47_14975	0.17	+0.7
3,159,185	-		IAI47_14975	0.18	+0.2
3,159,186	+		IAI47_14975	0.18	+0.2
3,159,186	+		IAI47_14975	0.18	+1.4
3,159,186	+		IAI47_14975	0.18	-1.2
3,159,187	-		IAI47_14975	0.18	-0.2
3,159,227	+		IAI47_14975	0.21	+0.4
3,159,227	+		IAI47_14975	0.21	+0.8
3,159,227	+		IAI47_14975	0.21	+0.7
3,159,227	+		IAI47_14975	0.21	-0.5
3,159,228	-		IAI47_14975	0.22	+1.0
3,159,228	-		IAI47_14975	0.22	-2.6
3,159,228	-		IAI47_14975	0.22	-1.1
3,159,228	-		IAI47_14975	0.22	+1.0
3,159,228	-		IAI47_14975	0.22	-0.9
3,159,291	-		IAI47_14975	0.27	-0.3
3,159,350	-		IAI47_14975	0.31	+0.1
3,159,350	-		IAI47_14975	0.31	-1.1
3,159,350	-		IAI47_14975	0.31	+0.9
3,159,370	+		IAI47_14975	0.33	+0.3
3,159,589	+		IAI47_14975	0.50	-0.4
3,159,625	+		IAI47_14975	0.53	+0.3
3,159,625	+		IAI47_14975	0.53	+0.5
3,159,626	-		IAI47_14975	0.53	+0.5
3,159,626	-		IAI47_14975	0.53	-0.1
3,159,646	+		IAI47_14975	0.55	-0.7
3,159,646	+		IAI47_14975	0.55	-1.5
3,159,646	-		IAI47_14975	0.55	+0.1
3,159,648	+		IAI47_14975	0.55	-0.0
3,159,648	+		IAI47_14975	0.55	-0.4
3,159,649	-		IAI47_14975	0.55	+0.4
3,159,649	-		IAI47_14975	0.55	-1.5
3,159,661	+		IAI47_14975	0.56	-1.4
3,159,715	+		IAI47_14975	0.60	+0.4
3,159,716	-		IAI47_14975	0.60	+0.3
3,159,716	-		IAI47_14975	0.60	-0.3
3,159,871	+		IAI47_14975	0.73	+1.3
3,159,871	+		IAI47_14975	0.73	+1.0
3,159,871	+		IAI47_14975	0.73	+0.7
3,159,871	+		IAI47_14975	0.73	-2.1
3,159,872	-		IAI47_14975	0.73	-0.3
3,159,872	-		IAI47_14975	0.73	-1.0
3,159,872	-		IAI47_14975	0.73	+0.2
3,159,872	-		IAI47_14975	0.73	-1.0
3,159,873	+		IAI47_14975	0.73	-2.3
3,159,873	+		IAI47_14975	0.73	+0.5
3,159,873	+		IAI47_14975	0.73	+0.3
3,159,873	+		IAI47_14975	0.73	-0.5
3,159,874	-		IAI47_14975	0.73	-0.5
3,159,874	-		IAI47_14975	0.73	+0.0
3,159,991	+		IAI47_14975	0.82	+0.0
3,159,992	-		IAI47_14975	0.82	+0.6
3,160,057	+		IAI47_14975	0.87	-0.4
3,160,057	+		IAI47_14975	0.87	+1.2
3,160,058	-		IAI47_14975	0.87	+0.7
3,160,058	-		IAI47_14975	0.87	+0.7
3,160,066	+		IAI47_14975	0.88	-0.2
3,160,066	+		IAI47_14975	0.88	-1.6
3,160,067	-		IAI47_14975	0.88	+2.0
3,160,067	-		IAI47_14975	0.88	+1.1
3,160,067	-		IAI47_14975	0.88	+0.9
3,160,067	-		IAI47_14975	0.88	+0.4
3,160,067	-		IAI47_14975	0.88	-1.3
3,160,067	-		IAI47_14975	0.88	-0.3
3,160,067	-		IAI47_14975	0.88	-1.4
3,160,103	+				-0.1
3,160,109	+				+3.0
3,160,109	+				-1.1
3,160,109	+				+1.9
3,160,110	-				+0.4
3,160,110	-				-0.4
3,160,110	-				-1.8
3,160,110	-				+0.3
3,160,110	-				+0.1
3,160,122	+				+0.0
3,160,122	+				-0.9
3,160,122	+				+0.1
3,160,122	+				-1.2
3,160,123	-				-0.4
3,160,199	+				-0.5
3,160,200	-				+0.3
3,160,200	-				+0.8
3,160,200	-				-1.1
3,160,217	-				-2.1
3,160,217	-				-1.0
3,160,217	-				+0.4
3,160,239	+				+0.7
3,160,240	-				-1.6
3,160,241	+				-0.2
3,160,241	+				-0.5
3,160,241	+				-0.5
3,160,242	-				+1.6
3,160,242	-				+1.5
3,160,242	-				-1.7
3,160,242	-				-0.2
3,160,242	-				-0.1
3,160,242	-				-1.8
3,160,242	-				-1.1
3,160,242	-				-0.4
3,160,242	-				+2.0
3,160,253	-				+0.3
3,160,264	-				-0.2
3,160,421	+				-0.7
3,160,421	+				+0.9
3,160,422	-				+0.9
3,160,439	+				-0.4
3,160,449	+				-0.7
3,160,449	+				+1.9
3,160,449	+				-0.4
3,160,450	-				-0.3
3,160,450	-				-0.8
3,160,450	-				-0.6
3,160,462	+				+1.2
3,160,487	+				+0.2
3,160,487	+				-1.5
3,160,487	+				-0.5
3,160,487	+				+0.0
3,160,488	-				-0.5
3,160,488	-				+1.0
3,160,488	-				-0.7
3,160,488	-				+0.3
3,160,488	-				+1.3
3,160,488	-				+0.8
3,160,488	-				+3.5
3,160,488	-				-1.7
3,160,531	+				+1.0
3,160,596	+				+1.6
3,160,597	-				+1.6
3,160,603	+				+0.1
3,160,603	+				+0.5
3,160,604	-				+1.8
3,160,609	+				-1.2
3,160,609	+				-2.5
3,160,609	+				-1.3
3,160,609	+				+1.2
3,160,609	+				-0.5
3,160,609	+				-0.8
3,160,609	+				+1.8
3,160,609	+				-0.5
3,160,610	-				+1.4
3,160,610	-				-1.0
3,160,610	-				+0.4
3,160,610	-				+0.7
3,160,610	-				+0.8
3,160,610	-				-2.1
3,160,610	-				+0.3
3,160,610	-				+0.7
3,160,610	-				-0.6
3,160,610	-				-1.1
3,160,617	+				+1.0
3,160,617	+				-1.5
3,160,617	+				-1.1
3,160,617	+				-0.6
3,160,618	-				+0.1
3,160,627	+				+0.5
3,160,627	+				-0.4
3,160,628	-				+0.4
3,160,628	-				-0.0
3,160,670	+				+1.2
3,160,670	+				+1.2
3,160,670	+				+0.3
3,160,671	-				-0.3
3,160,671	-				+1.5
3,160,671	-				-0.0
3,160,671	-				+0.0
3,160,671	-				+1.0
3,160,705	+		IAI47_14980	0.17	+0.3
3,160,706	-		IAI47_14980	0.17	-0.6
3,160,772	+		IAI47_14980	0.43	-0.4
3,160,773	-		IAI47_14980	0.44	-1.3
3,160,773	-		IAI47_14980	0.44	+0.6
3,160,773	-		IAI47_14980	0.44	-0.8
3,160,800	+		IAI47_14980	0.54	+1.1
3,160,800	+		IAI47_14980	0.54	-0.8
3,160,800	+		IAI47_14980	0.54	-2.0
3,160,827	+		IAI47_14980	0.65	-0.8
3,160,838	+		IAI47_14980	0.69	+0.5
3,160,839	-		IAI47_14980	0.70	-1.3
3,160,839	-		IAI47_14980	0.70	-1.5
3,160,867	+		IAI47_14980	0.81	+1.1
3,160,913	-				+0.9
3,160,929	+				+0.6
3,160,929	+				-0.2
3,160,929	+				-0.8
3,160,930	-				-1.5
3,160,943	+				-1.6
3,160,944	-				-0.5
3,160,944	-				+0.6
3,160,948	+				+0.3
3,160,948	+				-0.6
3,160,949	-				+2.0
3,161,014	+		IAI47_14985	0.27	+0.2
3,161,015	-		IAI47_14985	0.27	+0.3
3,161,064	+		IAI47_14985	0.43	-0.6
3,161,064	+		IAI47_14985	0.43	+2.0
3,161,064	+		IAI47_14985	0.43	+1.2
3,161,064	+		IAI47_14985	0.43	-1.2
3,161,082	+		IAI47_14985	0.48	-1.2
3,161,082	+		IAI47_14985	0.48	+1.3
3,161,210	+		IAI47_14985	0.89	+0.1
3,161,210	+		IAI47_14985	0.89	+0.0
3,161,211	-		IAI47_14985	0.89	-1.7
3,161,211	-		IAI47_14985	0.89	+0.6
3,161,211	-		IAI47_14985	0.89	-0.5
3,161,211	-		IAI47_14985	0.89	+1.3