Strain Fitness in Pantoea sp. MT58 around IAI47_14435

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,048,411	-		IAI47_14430	0.55	-0.6
3,048,411	-		IAI47_14430	0.55	-0.7
3,048,411	-		IAI47_14430	0.55	+0.6
3,048,422	+		IAI47_14430	0.56	-0.1
3,048,422	+		IAI47_14430	0.56	+0.6
3,048,423	-		IAI47_14430	0.56	-0.2
3,048,423	-		IAI47_14430	0.56	-0.3
3,048,423	-		IAI47_14430	0.56	+1.5
3,048,473	+		IAI47_14430	0.59	+0.3
3,048,473	+		IAI47_14430	0.59	+1.5
3,048,474	-		IAI47_14430	0.59	+0.8
3,048,525	-		IAI47_14430	0.62	+0.7
3,048,542	+		IAI47_14430	0.63	-0.7
3,048,543	-		IAI47_14430	0.63	-0.1
3,048,543	-		IAI47_14430	0.63	+1.5
3,048,543	-		IAI47_14430	0.63	+0.6
3,048,608	+		IAI47_14430	0.67	-0.7
3,048,609	-		IAI47_14430	0.67	-1.5
3,048,629	+		IAI47_14430	0.68	+0.9
3,048,901	-		IAI47_14430	0.84	+1.7
3,048,954	+		IAI47_14430	0.87	+2.1
3,048,954	+		IAI47_14430	0.87	+1.6
3,048,954	+		IAI47_14430	0.87	-0.3
3,048,955	-		IAI47_14430	0.87	+0.9
3,048,955	-		IAI47_14430	0.87	-0.8
3,048,955	-		IAI47_14430	0.87	+0.6
3,049,002	-		IAI47_14430	0.90	-1.9
3,049,026	+				+0.5
3,049,026	+				-1.3
3,049,044	+				-1.3
3,049,044	+				+0.3
3,049,044	+				+0.3
3,049,044	+				-0.6
3,049,044	+				-0.4
3,049,044	+				+0.3
3,049,044	+				+0.2
3,049,045	-				-0.9
3,049,103	+				+2.0
3,049,103	+				+0.3
3,049,103	+				+0.7
3,049,103	+				-0.1
3,049,103	+				-0.3
3,049,103	+				-1.2
3,049,104	-				-0.2
3,049,104	-				+0.7
3,049,104	-				-0.5
3,049,104	-				+1.4
3,049,104	-				-0.2
3,049,147	+				-0.5
3,049,148	-				-0.2
3,049,162	+				+1.1
3,049,163	-				+2.1
3,049,163	-				+0.9
3,049,163	-				+0.6
3,049,163	-				-0.9
3,049,163	-				-0.9
3,049,163	-				+0.3
3,049,174	+				+0.0
3,049,189	+				-0.2
3,049,189	+				+1.4
3,049,189	+				+0.0
3,049,189	+				+0.6
3,049,189	+				+1.6
3,049,189	+				+0.0
3,049,189	+				-0.0
3,049,189	+				-0.8
3,049,189	+				-1.7
3,049,189	+				-1.4
3,049,190	-				+0.0
3,049,190	-				+0.0
3,049,190	-				+2.0
3,049,190	-				+0.7
3,049,190	-				-0.8
3,049,190	-				+0.0
3,049,190	-				-0.4
3,049,190	-				+0.4
3,049,190	-				+2.0
3,049,190	-				-0.3
3,049,327	+				-0.9
3,049,327	+				-0.2
3,049,328	-				-0.2
3,049,328	-				-0.7
3,049,328	-				-0.8
3,049,357	+				+0.2
3,049,358	-				-1.3
3,049,358	-				-0.4
3,049,409	+				-0.3
3,049,409	+				+0.4
3,049,409	+				+0.0
3,049,484	+				-1.1
3,049,484	+				-0.7
3,049,484	+				-0.4
3,049,485	-				+0.1
3,049,485	-				+1.0
3,049,485	-				-2.2
3,049,502	+				-0.9
3,049,502	+				-0.1
3,049,503	-				+3.1
3,049,503	-				-0.2
3,049,506	+				+1.4
3,049,506	+				+0.3
3,049,506	+				-2.4
3,049,506	+				-0.5
3,049,506	+				+0.5
3,049,506	+				-1.5
3,049,507	-				+0.9
3,049,507	-				-1.8
3,049,507	-				-1.4
3,049,507	-				-1.6
3,049,507	-				+2.0
3,049,507	-				-0.9
3,049,507	-				-1.6
3,049,507	-				+0.9
3,049,507	-				-0.4
3,049,507	-				+0.7
3,049,507	-				+0.4
3,049,530	-		IAI47_14435	0.10	-0.0
3,049,530	-		IAI47_14435	0.10	+0.3
3,049,530	-		IAI47_14435	0.10	-0.4
3,049,530	-		IAI47_14435	0.10	-0.2
3,049,530	-		IAI47_14435	0.10	+0.6
3,049,530	-		IAI47_14435	0.10	+2.6
3,049,538	+		IAI47_14435	0.11	-0.3
3,049,563	+		IAI47_14435	0.13	+1.2
3,049,563	+		IAI47_14435	0.13	+1.9
3,049,564	-		IAI47_14435	0.13	+0.3
3,049,564	-		IAI47_14435	0.13	+1.6
3,049,583	+		IAI47_14435	0.14	-0.3
3,049,583	+		IAI47_14435	0.14	+1.1
3,049,583	+		IAI47_14435	0.14	+0.4
3,049,583	+		IAI47_14435	0.14	-1.1
3,049,584	-		IAI47_14435	0.14	+0.0
3,049,584	-		IAI47_14435	0.14	+1.4
3,049,584	-		IAI47_14435	0.14	+0.0
3,049,584	-		IAI47_14435	0.14	-0.0
3,049,587	+		IAI47_14435	0.15	+3.2
3,049,587	+		IAI47_14435	0.15	+1.6
3,049,587	+		IAI47_14435	0.15	+1.0
3,049,587	+		IAI47_14435	0.15	+0.6
3,049,588	-		IAI47_14435	0.15	+0.4
3,049,588	-		IAI47_14435	0.15	-0.4
3,049,588	-		IAI47_14435	0.15	-0.1
3,049,588	-		IAI47_14435	0.15	-1.2
3,049,610	-		IAI47_14435	0.16	-0.9
3,049,671	+		IAI47_14435	0.21	-0.4
3,049,671	+		IAI47_14435	0.21	-3.6
3,049,671	+		IAI47_14435	0.21	-0.4
3,049,671	+		IAI47_14435	0.21	+0.4
3,049,672	-		IAI47_14435	0.21	-2.3
3,049,672	-		IAI47_14435	0.21	+0.8
3,049,672	-		IAI47_14435	0.21	+1.9
3,049,672	-		IAI47_14435	0.21	-0.6
3,049,672	-		IAI47_14435	0.21	-1.6
3,049,672	-		IAI47_14435	0.21	+1.1
3,049,672	-		IAI47_14435	0.21	+0.9
3,049,672	-		IAI47_14435	0.21	-0.3
3,049,672	-		IAI47_14435	0.21	+0.4
3,049,672	-		IAI47_14435	0.21	+0.4
3,049,673	+		IAI47_14435	0.21	+0.1
3,049,673	+		IAI47_14435	0.21	-1.0
3,049,673	+		IAI47_14435	0.21	+0.9
3,049,673	+		IAI47_14435	0.21	+0.8
3,049,673	+		IAI47_14435	0.21	-0.3
3,049,673	+		IAI47_14435	0.21	+1.5
3,049,673	+		IAI47_14435	0.21	+0.3
3,049,674	-		IAI47_14435	0.21	+0.3
3,049,674	-		IAI47_14435	0.21	+1.0
3,049,674	-		IAI47_14435	0.21	+1.5
3,049,674	-		IAI47_14435	0.21	-0.1
3,049,674	-		IAI47_14435	0.21	+1.8
3,049,674	-		IAI47_14435	0.21	-2.1
3,049,674	-		IAI47_14435	0.21	+1.7
3,049,729	+		IAI47_14435	0.26	-1.0
3,049,745	+		IAI47_14435	0.27	-1.6
3,049,745	+		IAI47_14435	0.27	+0.7
3,049,794	+		IAI47_14435	0.31	+0.5
3,049,794	+		IAI47_14435	0.31	-0.6
3,049,795	-		IAI47_14435	0.31	+0.0
3,049,817	+		IAI47_14435	0.32	+0.4
3,049,829	+		IAI47_14435	0.33	+0.4
3,049,829	+		IAI47_14435	0.33	-1.3
3,049,829	+		IAI47_14435	0.33	+2.0
3,049,829	+		IAI47_14435	0.33	-0.7
3,049,829	+		IAI47_14435	0.33	+1.8
3,049,830	-		IAI47_14435	0.33	+2.0
3,049,830	-		IAI47_14435	0.33	-0.6
3,049,830	-		IAI47_14435	0.33	+0.5
3,049,830	-		IAI47_14435	0.33	-1.3
3,049,884	+		IAI47_14435	0.37	+0.8
3,049,884	+		IAI47_14435	0.37	-0.4
3,049,885	-		IAI47_14435	0.38	-0.6
3,049,885	-		IAI47_14435	0.38	-0.6
3,049,885	-		IAI47_14435	0.38	+2.2
3,049,885	-		IAI47_14435	0.38	-0.1
3,049,939	+		IAI47_14435	0.42	-0.9
3,049,995	+		IAI47_14435	0.46	+1.9
3,050,057	+		IAI47_14435	0.51	-0.3
3,050,057	+		IAI47_14435	0.51	-0.7
3,050,058	-		IAI47_14435	0.51	+1.0
3,050,058	-		IAI47_14435	0.51	+1.4
3,050,058	-		IAI47_14435	0.51	+1.9
3,050,117	+		IAI47_14435	0.55	+0.4
3,050,117	+		IAI47_14435	0.55	+1.9
3,050,117	+		IAI47_14435	0.55	+0.0
3,050,118	-		IAI47_14435	0.55	+0.9
3,050,118	-		IAI47_14435	0.55	+0.2
3,050,118	-		IAI47_14435	0.55	-0.3
3,050,118	-		IAI47_14435	0.55	+0.5
3,050,129	-		IAI47_14435	0.56	-1.2
3,050,129	-		IAI47_14435	0.56	+0.0
3,050,129	-		IAI47_14435	0.56	+0.4
3,050,179	+		IAI47_14435	0.60	+1.1
3,050,179	+		IAI47_14435	0.60	-0.2
3,050,179	+		IAI47_14435	0.60	-0.9
3,050,179	+		IAI47_14435	0.60	+0.4
3,050,180	-		IAI47_14435	0.60	+0.8
3,050,180	-		IAI47_14435	0.60	+0.5
3,050,205	+		IAI47_14435	0.62	+0.3
3,050,205	+		IAI47_14435	0.62	+1.0
3,050,205	+		IAI47_14435	0.62	-0.6
3,050,206	-		IAI47_14435	0.62	-2.7
3,050,257	-		IAI47_14435	0.66	+0.2
3,050,279	+		IAI47_14435	0.68	+2.2
3,050,279	+		IAI47_14435	0.68	+2.6
3,050,279	+		IAI47_14435	0.68	+1.0
3,050,279	+		IAI47_14435	0.68	+0.4
3,050,279	+		IAI47_14435	0.68	+1.0
3,050,279	+		IAI47_14435	0.68	+0.1
3,050,280	-		IAI47_14435	0.68	+1.2
3,050,315	+		IAI47_14435	0.71	-1.6
3,050,315	+		IAI47_14435	0.71	+0.6
3,050,315	+		IAI47_14435	0.71	+1.0
3,050,315	+		IAI47_14435	0.71	-0.5
3,050,315	+		IAI47_14435	0.71	-0.7
3,050,315	+		IAI47_14435	0.71	+0.5
3,050,316	-		IAI47_14435	0.71	-0.6
3,050,316	-		IAI47_14435	0.71	+1.5
3,050,316	-		IAI47_14435	0.71	-0.6
3,050,316	-		IAI47_14435	0.71	-0.7
3,050,316	-		IAI47_14435	0.71	+0.6
3,050,320	-		IAI47_14435	0.71	+0.6
3,050,321	+		IAI47_14435	0.71	-1.4
3,050,321	+		IAI47_14435	0.71	-0.8
3,050,321	+		IAI47_14435	0.71	-0.6
3,050,322	-		IAI47_14435	0.71	+0.9
3,050,346	+		IAI47_14435	0.73	+0.4
3,050,346	+		IAI47_14435	0.73	-0.7
3,050,347	-		IAI47_14435	0.73	-1.0
3,050,355	+		IAI47_14435	0.74	+2.1
3,050,355	+		IAI47_14435	0.74	+0.3
3,050,355	+		IAI47_14435	0.74	+0.2
3,050,355	+		IAI47_14435	0.74	+1.1
3,050,356	-		IAI47_14435	0.74	+0.1
3,050,356	-		IAI47_14435	0.74	-1.0
3,050,356	-		IAI47_14435	0.74	-0.2
3,050,356	-		IAI47_14435	0.74	+0.3
3,050,389	+		IAI47_14435	0.76	+0.8
3,050,400	+		IAI47_14435	0.77	-1.6
3,050,400	+		IAI47_14435	0.77	+1.5
3,050,401	-		IAI47_14435	0.77	-1.4
3,050,401	-		IAI47_14435	0.77	+0.8
3,050,412	+		IAI47_14435	0.78	+0.3
3,050,413	-		IAI47_14435	0.78	+0.7
3,050,469	+		IAI47_14435	0.82	+1.0
3,050,469	+		IAI47_14435	0.82	+0.1
3,050,471	+		IAI47_14435	0.83	-1.4
3,050,471	+		IAI47_14435	0.83	+0.8
3,050,471	+		IAI47_14435	0.83	-0.5
3,050,471	+		IAI47_14435	0.83	-0.5
3,050,472	-		IAI47_14435	0.83	-1.0
3,050,529	-		IAI47_14435	0.87	+1.0
3,050,586	+				-1.6
3,050,632	+				-1.4
3,050,632	+				-0.4
3,050,633	-				+0.9
3,050,633	-				-1.4
3,050,633	-				+0.6
3,050,633	-				+0.4
3,050,633	-				-1.3
3,050,663	+				+0.6
3,050,663	+				+1.0
3,050,663	+				-1.0
3,050,663	+				-1.1
3,050,663	+				-0.3
3,050,734	+				-1.9
3,050,734	+				+0.6
3,050,734	+				-0.3
3,050,734	+				-0.8
3,050,735	-				+0.7
3,050,758	-				-0.7
3,050,758	-				-0.6
3,050,795	-				+0.3
3,050,824	+				-2.0
3,050,824	+				-0.1
3,050,824	+				+0.2
3,050,824	+				+0.1
3,050,824	+				+0.5
3,050,824	+				+0.4
3,050,825	-				+0.5
3,050,825	-				+1.3
3,050,825	-				+3.8
3,050,825	-				+0.0
3,050,826	+				-0.9
3,050,826	+				-0.6
3,050,826	+				+0.5
3,050,826	+				-2.6
3,050,826	+				-0.6
3,050,826	+				-2.0
3,050,826	+				-0.3
3,050,827	-				-1.7
3,050,827	-				+0.0
3,050,827	-				-0.5
3,050,827	-				-0.4
3,050,827	-				-0.8
3,050,982	+		IAI47_14440	0.24	-0.6
3,050,982	+		IAI47_14440	0.24	+0.2
3,050,982	+		IAI47_14440	0.24	-0.2
3,050,983	-		IAI47_14440	0.24	+0.7
3,050,983	-		IAI47_14440	0.24	-0.8
3,050,983	-		IAI47_14440	0.24	-1.5
3,051,033	+		IAI47_14440	0.29	-1.1
3,051,033	+		IAI47_14440	0.29	-0.6
3,051,033	+		IAI47_14440	0.29	-0.4
3,051,033	+		IAI47_14440	0.29	+0.0
3,051,034	-		IAI47_14440	0.29	-1.0
3,051,034	-		IAI47_14440	0.29	+0.2
3,051,034	-		IAI47_14440	0.29	-0.0
3,051,034	-		IAI47_14440	0.29	-0.0
3,051,061	+		IAI47_14440	0.32	+0.3
3,051,062	-		IAI47_14440	0.32	+2.1
3,051,062	-		IAI47_14440	0.32	-0.9
3,051,147	-		IAI47_14440	0.41	-0.5
3,051,215	-		IAI47_14440	0.48	-1.2
3,051,215	-		IAI47_14440	0.48	-0.6
3,051,216	+		IAI47_14440	0.48	-1.6
3,051,216	+		IAI47_14440	0.48	+0.4
3,051,216	+		IAI47_14440	0.48	-1.4
3,051,217	-		IAI47_14440	0.48	+0.0
3,051,234	+		IAI47_14440	0.50	-0.0
3,051,234	+		IAI47_14440	0.50	+1.0
3,051,270	+		IAI47_14440	0.54	+1.3
3,051,270	+		IAI47_14440	0.54	-1.2
3,051,271	-		IAI47_14440	0.54	+0.5
3,051,271	-		IAI47_14440	0.54	+0.0
3,051,382	+		IAI47_14440	0.65	-1.0
3,051,383	-		IAI47_14440	0.65	-0.3
3,051,383	-		IAI47_14440	0.65	+0.5
3,051,414	+		IAI47_14440	0.69	-0.7
3,051,414	+		IAI47_14440	0.69	-1.2
3,051,414	+		IAI47_14440	0.69	+1.3
3,051,414	+		IAI47_14440	0.69	-1.0
3,051,414	+		IAI47_14440	0.69	-0.9
3,051,414	+		IAI47_14440	0.69	+0.5
3,051,414	+		IAI47_14440	0.69	+0.6
3,051,414	+		IAI47_14440	0.69	-1.6
3,051,415	-		IAI47_14440	0.69	-0.7
3,051,415	-		IAI47_14440	0.69	-0.8
3,051,415	-		IAI47_14440	0.69	-1.3
3,051,415	-		IAI47_14440	0.69	-0.2
3,051,415	-		IAI47_14440	0.69	+1.6
3,051,415	-		IAI47_14440	0.69	-0.6
3,051,415	-		IAI47_14440	0.69	+0.7
3,051,415	-		IAI47_14440	0.69	+1.7
3,051,439	+		IAI47_14440	0.71	+0.2
3,051,439	+		IAI47_14440	0.71	+1.1
3,051,440	-		IAI47_14440	0.71	-0.1
3,051,440	-		IAI47_14440	0.71	-1.1
3,051,440	-		IAI47_14440	0.71	+1.8
3,051,440	-		IAI47_14440	0.71	+0.0
3,051,481	-		IAI47_14440	0.76	-1.4
3,051,481	-		IAI47_14440	0.76	+0.1
3,051,488	+		IAI47_14440	0.76	+2.0
3,051,522	+		IAI47_14440	0.80	+0.3
3,051,522	+		IAI47_14440	0.80	+1.7
3,051,530	-		IAI47_14440	0.81	-0.4
3,051,530	-		IAI47_14440	0.81	-1.0
3,051,636	+				-1.3
3,051,643	+				+1.0
3,051,644	-				+0.5
3,051,644	-				-2.0
3,051,673	+				+0.2
3,051,678	-				+0.2
3,051,678	-				+0.1
3,051,678	-				-0.6
3,051,690	-				-0.6