Strain Fitness in Pantoea sp. MT58 around IAI47_09970

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,108,937	+		IAI47_09960	0.76	-0.6
2,108,938	-		IAI47_09960	0.76	-1.3
2,108,961	-		IAI47_09960	0.78	+1.7
2,109,001	+		IAI47_09960	0.82	+0.7
2,109,002	-		IAI47_09960	0.82	-0.3
2,109,002	-		IAI47_09960	0.82	-0.6
2,109,002	-		IAI47_09960	0.82	+0.8
2,109,081	+		IAI47_09960	0.89	-0.7
2,109,081	+		IAI47_09960	0.89	+0.7
2,109,082	-		IAI47_09960	0.89	-0.7
2,109,147	+				+0.7
2,109,148	-				-1.0
2,109,148	-				-0.5
2,109,172	+				-0.7
2,109,172	+				+0.3
2,109,173	-				+0.7
2,109,173	-				-0.8
2,109,281	+				-0.6
2,109,281	+				-1.0
2,109,281	+				+0.3
2,109,281	+				+0.5
2,109,281	+				+0.3
2,109,281	+				-0.7
2,109,281	+				+1.6
2,109,281	+				-0.0
2,109,282	-				-0.9
2,109,282	-				-0.4
2,109,282	-				+0.6
2,109,282	-				+1.1
2,109,282	-				-0.7
2,109,282	-				+0.1
2,109,325	-		IAI47_09965	0.14	-0.1
2,109,325	-		IAI47_09965	0.14	+0.7
2,109,325	-		IAI47_09965	0.14	-0.6
2,109,352	-		IAI47_09965	0.19	-1.2
2,109,352	-		IAI47_09965	0.19	+0.1
2,109,360	-		IAI47_09965	0.20	-0.7
2,109,415	+		IAI47_09965	0.29	+2.0
2,109,426	-		IAI47_09965	0.31	-0.6
2,109,426	-		IAI47_09965	0.31	+0.9
2,109,426	-		IAI47_09965	0.31	-0.3
2,109,533	+		IAI47_09965	0.50	+0.7
2,109,533	+		IAI47_09965	0.50	-1.0
2,109,533	+		IAI47_09965	0.50	+0.3
2,109,533	+		IAI47_09965	0.50	+2.0
2,109,651	-		IAI47_09965	0.70	-0.5
2,109,660	-		IAI47_09965	0.71	+1.7
2,109,661	+		IAI47_09965	0.71	-1.3
2,109,661	+		IAI47_09965	0.71	+2.2
2,109,661	+		IAI47_09965	0.71	+1.4
2,109,661	+		IAI47_09965	0.71	+0.1
2,109,661	+		IAI47_09965	0.71	+0.6
2,109,661	+		IAI47_09965	0.71	-1.0
2,109,661	+		IAI47_09965	0.71	-0.1
2,109,662	-		IAI47_09965	0.72	-0.9
2,109,662	-		IAI47_09965	0.72	+2.3
2,109,662	-		IAI47_09965	0.72	-0.9
2,109,662	-		IAI47_09965	0.72	-1.4
2,109,662	-		IAI47_09965	0.72	-0.4
2,109,694	+		IAI47_09965	0.77	+0.3
2,109,694	+		IAI47_09965	0.77	+0.1
2,109,694	+		IAI47_09965	0.77	+0.8
2,109,749	+		IAI47_09965	0.86	-0.8
2,109,749	+		IAI47_09965	0.86	+1.1
2,109,749	+		IAI47_09965	0.86	+1.5
2,109,750	-		IAI47_09965	0.87	-0.3
2,109,750	-		IAI47_09965	0.87	-0.9
2,109,750	-		IAI47_09965	0.87	-0.3
2,109,751	+		IAI47_09965	0.87	-1.5
2,109,751	+		IAI47_09965	0.87	-1.9
2,109,752	-		IAI47_09965	0.87	+1.2
2,109,752	-		IAI47_09965	0.87	-0.2
2,109,752	-		IAI47_09965	0.87	-0.5
2,109,752	-		IAI47_09965	0.87	+0.2
2,109,752	-		IAI47_09965	0.87	-0.5
2,109,765	-		IAI47_09965	0.89	-0.2
2,109,766	+		IAI47_09965	0.89	+0.9
2,109,766	+		IAI47_09965	0.89	-1.1
2,109,767	-		IAI47_09965	0.90	+1.0
2,109,767	-		IAI47_09965	0.90	-1.2
2,109,773	+				-0.0
2,109,774	-				-0.5
2,109,774	-				-1.1
2,109,774	-				-1.7
2,109,863	-				+1.3
2,109,916	-				+0.4
2,109,969	+				+1.0
2,109,969	+				+0.5
2,109,970	-				-2.1
2,109,970	-				+0.1
2,110,053	+		IAI47_09970	0.19	-2.1
2,110,053	+		IAI47_09970	0.19	-0.4
2,110,054	-		IAI47_09970	0.19	-1.4
2,110,147	+		IAI47_09970	0.31	+1.0
2,110,195	-		IAI47_09970	0.38	+0.7
2,110,195	-		IAI47_09970	0.38	-0.7
2,110,227	+		IAI47_09970	0.42	-0.5
2,110,255	+		IAI47_09970	0.46	+0.5
2,110,320	+		IAI47_09970	0.55	-0.7
2,110,320	+		IAI47_09970	0.55	-0.1
2,110,320	+		IAI47_09970	0.55	+0.1
2,110,320	+		IAI47_09970	0.55	-1.1
2,110,321	-		IAI47_09970	0.55	-1.1
2,110,321	-		IAI47_09970	0.55	-0.6
2,110,321	-		IAI47_09970	0.55	+1.4
2,110,340	+		IAI47_09970	0.57	+0.3
2,110,340	+		IAI47_09970	0.57	-1.1
2,110,340	+		IAI47_09970	0.57	+0.2
2,110,340	+		IAI47_09970	0.57	+0.7
2,110,341	-		IAI47_09970	0.57	+0.4
2,110,341	-		IAI47_09970	0.57	-0.8
2,110,342	+		IAI47_09970	0.57	+0.7
2,110,342	+		IAI47_09970	0.57	+0.7
2,110,342	+		IAI47_09970	0.57	-0.1
2,110,372	+		IAI47_09970	0.61	+0.7
2,110,372	+		IAI47_09970	0.61	+3.2
2,110,372	+		IAI47_09970	0.61	+1.8
2,110,372	+		IAI47_09970	0.61	+1.6
2,110,372	+		IAI47_09970	0.61	-0.6
2,110,373	-		IAI47_09970	0.62	-1.3
2,110,373	-		IAI47_09970	0.62	-0.3
2,110,373	-		IAI47_09970	0.62	+1.6
2,110,396	+		IAI47_09970	0.65	+0.1
2,110,415	-		IAI47_09970	0.67	-1.4
2,110,585	+		IAI47_09970	0.90	+2.0
2,110,585	+		IAI47_09970	0.90	+0.2
2,110,687	+				-0.9
2,110,783	+		IAI47_09975	0.25	-0.7
2,110,784	-		IAI47_09975	0.25	+1.0
2,110,784	-		IAI47_09975	0.25	+0.2
2,110,819	+		IAI47_09975	0.32	+0.3
2,110,819	+		IAI47_09975	0.32	-0.6
2,110,819	+		IAI47_09975	0.32	+0.2
2,110,819	+		IAI47_09975	0.32	-0.1
2,110,842	-		IAI47_09975	0.36	-0.0
2,110,961	+		IAI47_09975	0.59	+2.1
2,111,018	+		IAI47_09975	0.70	+2.1
2,111,019	-		IAI47_09975	0.71	-0.7
2,111,019	-		IAI47_09975	0.71	-0.1
2,111,108	+		IAI47_09975	0.88	-0.0
2,111,238	-				+0.9
2,111,240	+				+1.0
2,111,240	+				+0.5
2,111,241	-				+1.4
2,111,293	+				+1.0
2,111,294	-				-2.0
2,111,294	-				+3.3
2,111,299	+				-1.8
2,111,300	-				-2.3
2,111,300	-				+1.1
2,111,357	+		IAI47_09980	0.15	-1.0
2,111,357	+		IAI47_09980	0.15	+0.7
2,111,358	-		IAI47_09980	0.15	+0.9
2,111,358	-		IAI47_09980	0.15	-1.2
2,111,390	+		IAI47_09980	0.23	-0.1
2,111,390	+		IAI47_09980	0.23	+1.3
2,111,390	+		IAI47_09980	0.23	+0.3
2,111,390	+		IAI47_09980	0.23	-0.4
2,111,391	-		IAI47_09980	0.23	+0.2
2,111,391	-		IAI47_09980	0.23	+0.2
2,111,432	+		IAI47_09980	0.34	+0.5
2,111,467	+		IAI47_09980	0.42	+1.7
2,111,467	+		IAI47_09980	0.42	-0.4
2,111,467	+		IAI47_09980	0.42	+0.4
2,111,467	+		IAI47_09980	0.42	+0.2
2,111,468	-		IAI47_09980	0.43	+1.2
2,111,468	-		IAI47_09980	0.43	-1.5
2,111,468	-		IAI47_09980	0.43	-0.9
2,111,468	-		IAI47_09980	0.43	+0.2
2,111,594	+		IAI47_09980	0.74	+0.3
2,111,632	+		IAI47_09980	0.84	+0.6
2,111,632	+		IAI47_09980	0.84	+0.5
2,111,632	+		IAI47_09980	0.84	+2.7
2,111,632	+		IAI47_09980	0.84	-1.3
2,111,633	-		IAI47_09980	0.84	-1.7
2,111,633	-		IAI47_09980	0.84	-1.3
2,111,633	-		IAI47_09980	0.84	-0.2
2,111,633	-		IAI47_09980	0.84	-0.2
2,111,633	-		IAI47_09980	0.84	+0.4
2,111,635	-		IAI47_09980	0.84	-0.3