Strain Fitness in Pantoea sp. MT58 around IAI47_09280

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,955,667	+				-2.2
1,955,689	+				-2.3
1,955,724	-				-0.2
1,955,777	+				+0.3
1,955,777	+				-0.2
1,955,778	-				+1.3
1,955,778	-				+0.6
1,955,778	-				+0.5
1,955,820	+				-1.4
1,955,820	+				+0.8
1,955,830	-				-0.4
1,955,830	-				+0.8
1,955,937	+				+0.1
1,955,937	+				-0.5
1,955,937	+				-0.2
1,955,968	+		IAI47_09275	0.11	+1.0
1,955,968	+		IAI47_09275	0.11	-0.1
1,955,968	+		IAI47_09275	0.11	+0.7
1,955,969	-		IAI47_09275	0.12	-0.3
1,956,020	+		IAI47_09275	0.19	+0.1
1,956,020	+		IAI47_09275	0.19	+1.8
1,956,020	+		IAI47_09275	0.19	-0.2
1,956,021	-		IAI47_09275	0.19	+1.3
1,956,021	-		IAI47_09275	0.19	+1.6
1,956,104	+		IAI47_09275	0.30	-1.0
1,956,105	-		IAI47_09275	0.30	-0.4
1,956,105	-		IAI47_09275	0.30	+1.1
1,956,105	-		IAI47_09275	0.30	-0.5
1,956,241	+		IAI47_09275	0.49	+0.1
1,956,256	+		IAI47_09275	0.51	+1.4
1,956,256	+		IAI47_09275	0.51	+2.7
1,956,266	+		IAI47_09275	0.53	-1.3
1,956,266	+		IAI47_09275	0.53	-0.4
1,956,267	-		IAI47_09275	0.53	-0.5
1,956,267	-		IAI47_09275	0.53	-1.7
1,956,299	+		IAI47_09275	0.57	+0.2
1,956,299	+		IAI47_09275	0.57	-0.3
1,956,300	-		IAI47_09275	0.57	-0.4
1,956,514	+		IAI47_09275	0.87	-0.6
1,956,514	+		IAI47_09275	0.87	-0.2
1,956,515	-		IAI47_09275	0.87	-0.1
1,956,519	+		IAI47_09275	0.88	-2.8
1,956,519	+		IAI47_09275	0.88	-0.7
1,956,519	+		IAI47_09275	0.88	-3.1
1,956,519	+		IAI47_09275	0.88	-0.1
1,956,519	+		IAI47_09275	0.88	-0.4
1,956,519	+		IAI47_09275	0.88	+0.4
1,956,519	+		IAI47_09275	0.88	-1.7
1,956,519	+		IAI47_09275	0.88	+0.2
1,956,519	+		IAI47_09275	0.88	-0.9
1,956,520	-		IAI47_09275	0.88	-1.4
1,956,520	-		IAI47_09275	0.88	+0.8
1,956,520	-		IAI47_09275	0.88	-2.0
1,956,520	-		IAI47_09275	0.88	-0.3
1,956,529	+		IAI47_09275	0.89	+0.2
1,956,616	+				+1.4
1,956,616	+				-1.0
1,956,629	+				-0.1
1,956,653	-		IAI47_09280	0.15	-1.1
1,956,667	+		IAI47_09280	0.19	-0.8
1,956,668	-		IAI47_09280	0.19	-0.4
1,956,699	+		IAI47_09280	0.29	+6.2
1,956,700	-		IAI47_09280	0.29	+2.7
1,956,700	-		IAI47_09280	0.29	+2.8
1,956,700	-		IAI47_09280	0.29	+0.5
1,956,700	-		IAI47_09280	0.29	+0.7
1,956,700	-		IAI47_09280	0.29	+0.7
1,956,831	+		IAI47_09280	0.70	+1.4
1,956,831	+		IAI47_09280	0.70	+0.4
1,956,873	+		IAI47_09280	0.83	+0.6
1,956,873	+		IAI47_09280	0.83	-0.6
1,956,895	+		IAI47_09280	0.90	-0.4
1,956,896	-				+1.6
1,956,969	+				+1.4
1,956,969	+				+0.7
1,956,969	+				-1.8
1,956,969	+				+3.7
1,956,969	+				+0.7
1,956,970	-				-0.7
1,956,970	-				+0.5
1,956,970	-				-1.0
1,956,970	-				-1.1
1,956,970	-				-0.5
1,956,970	-				-1.1
1,956,977	+				+3.2
1,956,977	+				-0.1
1,956,998	+				+0.9
1,957,001	+				+0.5
1,957,001	+				-0.4
1,957,001	+				+0.0
1,957,002	-				-0.4
1,957,002	-				-0.6
1,957,010	+				+1.0
1,957,011	-				+0.1
1,957,029	+				+0.8
1,957,030	-				-0.4
1,957,030	-				+0.1
1,957,032	+		IAI47_09285	0.11	+0.6
1,957,033	-		IAI47_09285	0.11	+0.6
1,957,033	-		IAI47_09285	0.11	+0.8
1,957,033	-		IAI47_09285	0.11	-0.4
1,957,033	-		IAI47_09285	0.11	-1.3
1,957,033	-		IAI47_09285	0.11	+0.4
1,957,033	-		IAI47_09285	0.11	-1.6
1,957,140	+		IAI47_09285	0.61	+0.3
1,957,141	-		IAI47_09285	0.61	-0.3
1,957,141	-		IAI47_09285	0.61	+0.0
1,957,141	-		IAI47_09285	0.61	+1.4
1,957,141	-		IAI47_09285	0.61	+1.0
1,957,141	-		IAI47_09285	0.61	+0.0
1,957,150	-		IAI47_09285	0.65	-0.0
1,957,175	-		IAI47_09285	0.77	+1.2
1,957,175	-		IAI47_09285	0.77	+1.2
1,957,182	+		IAI47_09285	0.80	-1.5
1,957,219	-				+1.4
1,957,219	-				-1.1
1,957,219	-				+2.8
1,957,224	+				+1.3
1,957,224	+				+0.6
1,957,224	+				+0.4
1,957,224	+				+0.3
1,957,224	+				+1.0
1,957,225	-				+2.5
1,957,225	-				-1.4
1,957,225	-				+0.8
1,957,225	-				+2.1
1,957,225	-				-1.3
1,957,263	+				+0.9
1,957,263	+				-2.0
1,957,264	-				-0.3
1,957,264	-				+0.3
1,957,264	-				-0.2
1,957,264	-				+1.4
1,957,266	+				-0.8
1,957,267	-				+0.8
1,957,267	-				+0.5
1,957,267	-				+0.1
1,957,268	+				+0.5
1,957,268	+				-1.2
1,957,269	-				-0.6
1,957,269	-				-0.1
1,957,269	-				-0.7
1,957,305	-				-0.1
1,957,305	-				-0.4
1,957,305	-				+0.0
1,957,326	+				-0.4
1,957,326	+				+0.4
1,957,327	-				-1.0
1,957,327	-				+1.5
1,957,327	-				-0.1
1,957,329	-				-0.2
1,957,358	+				+0.8
1,957,430	+				+1.0
1,957,430	+				+0.8
1,957,498	+				+0.4
1,957,499	-				+0.0
1,957,500	+				-3.0
1,957,501	-				+0.5
1,957,515	+				-1.2
1,957,588	+				-1.6
1,957,588	+				-0.4
1,957,589	-				+0.6
1,957,589	-				+1.1
1,957,589	-				-1.0
1,957,589	-				+0.4
1,957,589	-				-1.7
1,957,620	+				-1.6
1,957,629	-				+3.1
1,957,629	-				-1.1
1,957,645	+		IAI47_09290	0.10	-0.2
1,957,645	+		IAI47_09290	0.10	-0.6
1,957,645	+		IAI47_09290	0.10	-0.9
1,957,646	-		IAI47_09290	0.10	-0.0
1,957,646	-		IAI47_09290	0.10	+1.2
1,957,646	-		IAI47_09290	0.10	+1.8
1,957,696	+		IAI47_09290	0.17	-0.6
1,957,696	+		IAI47_09290	0.17	-1.2
1,957,697	-		IAI47_09290	0.18	+1.6
1,957,697	-		IAI47_09290	0.18	+0.8
1,957,697	-		IAI47_09290	0.18	-0.7
1,957,715	+		IAI47_09290	0.20	+2.0
1,957,716	-		IAI47_09290	0.20	+0.4
1,957,770	+		IAI47_09290	0.28	+2.0
1,957,770	+		IAI47_09290	0.28	-1.6
1,957,770	+		IAI47_09290	0.28	+1.6
1,957,771	-		IAI47_09290	0.28	+1.5
1,957,771	-		IAI47_09290	0.28	+0.6
1,957,773	+		IAI47_09290	0.28	-1.3
1,957,773	+		IAI47_09290	0.28	-1.9
1,957,773	+		IAI47_09290	0.28	-0.7
1,957,773	+		IAI47_09290	0.28	+1.4
1,957,773	+		IAI47_09290	0.28	-0.5
1,957,773	+		IAI47_09290	0.28	+0.2
1,957,773	+		IAI47_09290	0.28	+2.9
1,957,774	-		IAI47_09290	0.29	+0.4
1,957,774	-		IAI47_09290	0.29	+0.4
1,957,774	-		IAI47_09290	0.29	-0.8
1,957,823	+		IAI47_09290	0.36	-0.4
1,957,858	+		IAI47_09290	0.41	-0.2
1,957,859	-		IAI47_09290	0.41	+1.8
1,957,859	-		IAI47_09290	0.41	+1.2