Strain Fitness in Pantoea sp. MT58 around IAI47_07600

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,607,331	+		IAI47_07595	0.29	-0.1
1,607,331	+		IAI47_07595	0.29	-2.4
1,607,332	-		IAI47_07595	0.29	+0.2
1,607,332	-		IAI47_07595	0.29	+0.2
1,607,332	-		IAI47_07595	0.29	+0.7
1,607,332	-		IAI47_07595	0.29	+0.5
1,607,377	+		IAI47_07595	0.33	-0.1
1,607,378	-		IAI47_07595	0.33	-0.9
1,607,378	-		IAI47_07595	0.33	+0.1
1,607,413	+		IAI47_07595	0.35	+0.9
1,607,508	+		IAI47_07595	0.43	-2.0
1,607,508	+		IAI47_07595	0.43	-0.3
1,607,508	+		IAI47_07595	0.43	-1.0
1,607,509	-		IAI47_07595	0.43	+0.0
1,607,509	-		IAI47_07595	0.43	+1.9
1,607,585	+		IAI47_07595	0.49	-0.0
1,607,602	+		IAI47_07595	0.50	+0.8
1,607,603	-		IAI47_07595	0.50	+2.9
1,607,603	-		IAI47_07595	0.50	+1.2
1,607,615	+		IAI47_07595	0.51	-0.4
1,607,616	-		IAI47_07595	0.51	+1.5
1,607,727	+		IAI47_07595	0.60	+1.1
1,607,727	+		IAI47_07595	0.60	+1.6
1,607,727	+		IAI47_07595	0.60	-0.2
1,607,727	+		IAI47_07595	0.60	-0.7
1,607,727	+		IAI47_07595	0.60	+0.7
1,607,727	+		IAI47_07595	0.60	-0.1
1,607,728	-		IAI47_07595	0.60	+1.1
1,607,791	+		IAI47_07595	0.65	-0.4
1,607,792	-		IAI47_07595	0.65	-1.0
1,607,792	-		IAI47_07595	0.65	-0.9
1,607,792	-		IAI47_07595	0.65	+1.6
1,607,792	-		IAI47_07595	0.65	-0.0
1,607,792	-		IAI47_07595	0.65	-0.8
1,607,792	-		IAI47_07595	0.65	+0.2
1,607,792	-		IAI47_07595	0.65	-0.5
1,607,792	-		IAI47_07595	0.65	-1.9
1,607,792	-		IAI47_07595	0.65	+1.5
1,607,818	+		IAI47_07595	0.67	+1.1
1,607,818	+		IAI47_07595	0.67	-0.8
1,607,819	-		IAI47_07595	0.67	-0.1
1,607,819	-		IAI47_07595	0.67	-2.0
1,607,968	+		IAI47_07595	0.79	-1.7
1,607,969	-		IAI47_07595	0.79	+0.3
1,608,040	+		IAI47_07595	0.85	+0.6
1,608,040	+		IAI47_07595	0.85	-1.0
1,608,041	-		IAI47_07595	0.85	-0.9
1,608,191	+				-1.0
1,608,208	+				+0.3
1,608,209	-				-0.9
1,608,209	-				-0.9
1,608,209	-				-0.0
1,608,211	+				+0.0
1,608,211	+				+0.5
1,608,211	+				-1.1
1,608,212	-				+0.8
1,608,212	-				-0.9
1,608,212	-				-1.0
1,608,212	-				+0.6
1,608,212	-				-0.7
1,608,212	-				+0.5
1,608,235	+				-0.6
1,608,235	+				+2.0
1,608,235	+				-0.5
1,608,236	-				+0.5
1,608,236	-				-0.7
1,608,304	+				+0.9
1,608,304	+				+0.9
1,608,304	+				-0.5
1,608,305	-				+0.5
1,608,305	-				+0.3
1,608,305	-				+0.5
1,608,305	-				+0.9
1,608,305	-				-0.1
1,608,313	+				-2.1
1,608,314	-				+2.5
1,608,314	-				-0.7
1,608,325	+				-1.4
1,608,325	+				+0.8
1,608,326	-				+0.7
1,608,326	-				+1.6
1,608,337	+				-1.0
1,608,337	+				-1.0
1,608,337	+				-1.5
1,608,337	+				+0.5
1,608,338	-				-2.2
1,608,338	-				+0.4
1,608,354	+				+1.1
1,608,494	-		IAI47_07600	0.11	-0.1
1,608,563	-		IAI47_07600	0.15	+1.4
1,608,563	-		IAI47_07600	0.15	+0.7
1,608,578	+		IAI47_07600	0.16	-2.1
1,608,578	+		IAI47_07600	0.16	-1.1
1,608,579	-		IAI47_07600	0.16	+1.9
1,608,579	-		IAI47_07600	0.16	-1.0
1,608,579	-		IAI47_07600	0.16	-0.1
1,608,593	-		IAI47_07600	0.17	-1.5
1,608,593	-		IAI47_07600	0.17	-2.2
1,608,599	+		IAI47_07600	0.17	-1.7
1,608,599	+		IAI47_07600	0.17	+2.1
1,608,599	+		IAI47_07600	0.17	+0.4
1,608,599	+		IAI47_07600	0.17	+0.9
1,608,600	-		IAI47_07600	0.17	-1.4
1,608,622	+		IAI47_07600	0.19	+3.3
1,608,622	+		IAI47_07600	0.19	+0.1
1,608,688	+		IAI47_07600	0.23	-1.0
1,608,689	-		IAI47_07600	0.23	+0.1
1,608,689	-		IAI47_07600	0.23	+0.3
1,608,791	-		IAI47_07600	0.29	+0.4
1,608,799	+		IAI47_07600	0.30	-0.6
1,608,800	-		IAI47_07600	0.30	-1.2
1,608,817	+		IAI47_07600	0.31	-0.0
1,608,818	-		IAI47_07600	0.31	-0.0
1,608,818	-		IAI47_07600	0.31	-0.6
1,608,887	+		IAI47_07600	0.35	+0.5
1,608,887	+		IAI47_07600	0.35	-1.8
1,608,887	+		IAI47_07600	0.35	-0.1
1,608,887	+		IAI47_07600	0.35	-0.1
1,608,887	+		IAI47_07600	0.35	+1.4
1,608,887	+		IAI47_07600	0.35	+3.0
1,608,887	+		IAI47_07600	0.35	+0.6
1,608,887	+		IAI47_07600	0.35	+1.7
1,608,887	+		IAI47_07600	0.35	+0.9
1,608,887	+		IAI47_07600	0.35	+2.5
1,608,888	-		IAI47_07600	0.35	+0.7
1,608,888	-		IAI47_07600	0.35	+1.2
1,608,888	-		IAI47_07600	0.35	-0.9
1,608,888	-		IAI47_07600	0.35	+0.2
1,608,983	-		IAI47_07600	0.41	+0.6
1,609,022	+		IAI47_07600	0.44	+0.7
1,609,022	+		IAI47_07600	0.44	+2.4
1,609,022	+		IAI47_07600	0.44	+0.1
1,609,022	+		IAI47_07600	0.44	-0.3
1,609,023	-		IAI47_07600	0.44	+0.6
1,609,023	-		IAI47_07600	0.44	-1.4
1,609,025	+		IAI47_07600	0.44	-1.9
1,609,025	+		IAI47_07600	0.44	+0.9
1,609,026	-		IAI47_07600	0.44	+0.4
1,609,026	-		IAI47_07600	0.44	+0.1
1,609,026	-		IAI47_07600	0.44	-0.6
1,609,026	-		IAI47_07600	0.44	+0.8
1,609,122	+		IAI47_07600	0.50	+1.3
1,609,122	+		IAI47_07600	0.50	-0.4
1,609,122	+		IAI47_07600	0.50	-1.9
1,609,122	+		IAI47_07600	0.50	+0.0
1,609,123	-		IAI47_07600	0.50	-0.7
1,609,123	-		IAI47_07600	0.50	-1.3
1,609,123	-		IAI47_07600	0.50	+1.7
1,609,123	-		IAI47_07600	0.50	-0.0
1,609,123	-		IAI47_07600	0.50	-0.6
1,609,205	+		IAI47_07600	0.55	-1.3
1,609,205	+		IAI47_07600	0.55	-1.4
1,609,205	+		IAI47_07600	0.55	-0.1
1,609,205	+		IAI47_07600	0.55	-1.3
1,609,205	+		IAI47_07600	0.55	-1.1
1,609,205	+		IAI47_07600	0.55	+0.1
1,609,205	+		IAI47_07600	0.55	+1.2
1,609,205	+		IAI47_07600	0.55	+1.9
1,609,205	+		IAI47_07600	0.55	-0.0
1,609,205	+		IAI47_07600	0.55	-0.3
1,609,205	+		IAI47_07600	0.55	+0.3
1,609,206	-		IAI47_07600	0.55	-0.4
1,609,206	-		IAI47_07600	0.55	-1.0
1,609,206	-		IAI47_07600	0.55	+1.5
1,609,206	-		IAI47_07600	0.55	+1.0
1,609,206	-		IAI47_07600	0.55	-0.3
1,609,206	-		IAI47_07600	0.55	+0.1
1,609,206	-		IAI47_07600	0.55	+0.0
1,609,206	-		IAI47_07600	0.55	+0.3
1,609,206	-		IAI47_07600	0.55	+0.2
1,609,206	-		IAI47_07600	0.55	-1.5
1,609,206	-		IAI47_07600	0.55	+0.7
1,609,206	-		IAI47_07600	0.55	+2.6
1,609,206	-		IAI47_07600	0.55	-1.5
1,609,206	-		IAI47_07600	0.55	+0.2
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,206	-		IAI47_07600	0.55	-0.4
1,609,206	-		IAI47_07600	0.55	-2.5
1,609,206	-		IAI47_07600	0.55	+2.6
1,609,207	+		IAI47_07600	0.55	-1.0
1,609,208	-		IAI47_07600	0.55	-0.5
1,609,208	-		IAI47_07600	0.55	-1.0
1,609,234	+		IAI47_07600	0.57	+0.4
1,609,234	+		IAI47_07600	0.57	-0.2
1,609,243	+		IAI47_07600	0.57	+0.4
1,609,274	+		IAI47_07600	0.59	-0.7
1,609,275	-		IAI47_07600	0.59	+0.1
1,609,275	-		IAI47_07600	0.59	+0.1
1,609,308	+		IAI47_07600	0.61	-0.6
1,609,308	+		IAI47_07600	0.61	-1.9
1,609,320	-		IAI47_07600	0.62	+2.0
1,609,333	+		IAI47_07600	0.63	+3.9
1,609,334	-		IAI47_07600	0.63	+1.9
1,609,334	-		IAI47_07600	0.63	+0.6
1,609,334	-		IAI47_07600	0.63	-0.1
1,609,334	-		IAI47_07600	0.63	-0.3
1,609,367	+		IAI47_07600	0.65	-0.2
1,609,367	+		IAI47_07600	0.65	-0.7
1,609,368	-		IAI47_07600	0.65	-1.9
1,609,368	-		IAI47_07600	0.65	-0.9
1,609,368	-		IAI47_07600	0.65	-1.8
1,609,368	-		IAI47_07600	0.65	+0.4
1,609,420	+		IAI47_07600	0.68	-0.4
1,609,452	+		IAI47_07600	0.70	+0.3
1,609,452	+		IAI47_07600	0.70	-0.7
1,609,465	+		IAI47_07600	0.71	-0.3
1,609,465	+		IAI47_07600	0.71	-0.1
1,609,545	+		IAI47_07600	0.76	+1.7
1,609,545	+		IAI47_07600	0.76	-0.4
1,609,560	-		IAI47_07600	0.77	+1.8
1,609,560	-		IAI47_07600	0.77	-0.2
1,609,614	+		IAI47_07600	0.80	+1.0
1,609,636	+		IAI47_07600	0.82	+1.2
1,609,636	+		IAI47_07600	0.82	+1.1
1,609,637	-		IAI47_07600	0.82	-1.8
1,609,655	+		IAI47_07600	0.83	-1.1
1,609,655	+		IAI47_07600	0.83	+0.4
1,609,656	-		IAI47_07600	0.83	-0.6
1,609,656	-		IAI47_07600	0.83	-1.1
1,609,656	-		IAI47_07600	0.83	-1.0
1,609,664	-		IAI47_07600	0.84	-2.5
1,609,763	+		IAI47_07600	0.90	+1.2
1,609,763	+		IAI47_07600	0.90	-1.9
1,609,763	+		IAI47_07600	0.90	-1.6
1,609,764	-		IAI47_07600	0.90	+0.1
1,609,764	-		IAI47_07600	0.90	+0.3
1,609,764	-		IAI47_07600	0.90	+0.3
1,609,764	-		IAI47_07600	0.90	+4.2
1,609,764	-		IAI47_07600	0.90	-0.4
1,609,764	-		IAI47_07600	0.90	-1.3
1,609,764	-		IAI47_07600	0.90	+3.4
1,609,764	-		IAI47_07600	0.90	-0.7
1,609,764	-		IAI47_07600	0.90	-0.5
1,609,764	-		IAI47_07600	0.90	+0.7
1,609,764	-		IAI47_07600	0.90	+1.3
1,609,764	-		IAI47_07600	0.90	+1.5
1,609,787	+				-0.9
1,609,787	+				+0.2
1,609,787	+				-0.4
1,609,788	-				+0.4
1,609,807	+				+0.4
1,609,808	-				+0.7
1,609,819	+				+2.0
1,609,838	+				+0.5
1,609,838	+				+0.6
1,609,839	-				+0.1
1,609,839	-				+0.9
1,609,839	-				+0.4
1,609,839	-				-1.1
1,609,839	-				-1.0
1,609,839	-				-0.0
1,609,840	+				-1.1
1,609,840	+				+0.1
1,609,840	+				-1.1
1,609,840	+				+0.4
1,609,840	+				+0.0
1,609,841	-				+0.4
1,609,841	-				+3.2
1,609,841	-				-0.4
1,609,841	-				+1.5
1,609,852	+				-0.1
1,609,860	+				-0.9
1,609,892	+				-0.6
1,609,954	+				-1.0
1,609,955	-				+1.8
1,609,961	+				+0.9
1,609,961	+				+1.0
1,609,961	+				-0.3
1,609,961	+				+0.2
1,609,977	+				-1.1
1,609,977	+				-0.1
1,609,978	-				+0.6
1,609,978	-				+0.6
1,610,030	+				-0.6
1,610,172	+		IAI47_07605	0.21	+0.3
1,610,172	+		IAI47_07605	0.21	-1.1
1,610,172	+		IAI47_07605	0.21	-1.4
1,610,173	-		IAI47_07605	0.21	+2.2
1,610,173	-		IAI47_07605	0.21	-2.8
1,610,174	+		IAI47_07605	0.22	-0.4
1,610,174	+		IAI47_07605	0.22	+1.8
1,610,174	+		IAI47_07605	0.22	-0.6
1,610,175	-		IAI47_07605	0.22	+3.4
1,610,175	-		IAI47_07605	0.22	+2.0
1,610,262	-		IAI47_07605	0.31	+1.4
1,610,508	+		IAI47_07605	0.56	-0.1
1,610,508	+		IAI47_07605	0.56	-0.4
1,610,509	-		IAI47_07605	0.57	+1.8
1,610,520	+		IAI47_07605	0.58	+0.7
1,610,520	+		IAI47_07605	0.58	+0.9
1,610,521	-		IAI47_07605	0.58	-0.1
1,610,521	-		IAI47_07605	0.58	+0.1
1,610,591	+		IAI47_07605	0.65	+2.2
1,610,592	-		IAI47_07605	0.65	-1.1
1,610,613	+		IAI47_07605	0.67	+0.7
1,610,614	-		IAI47_07605	0.68	+0.4
1,610,614	-		IAI47_07605	0.68	+1.3
1,610,614	-		IAI47_07605	0.68	+1.7
1,610,614	-		IAI47_07605	0.68	+0.3
1,610,614	-		IAI47_07605	0.68	+1.2
1,610,724	+		IAI47_07605	0.79	-1.7
1,610,724	+		IAI47_07605	0.79	-0.3
1,610,724	+		IAI47_07605	0.79	+0.1
1,610,724	+		IAI47_07605	0.79	+0.6
1,610,725	-		IAI47_07605	0.79	-0.9
1,610,725	-		IAI47_07605	0.79	-0.9
1,610,725	-		IAI47_07605	0.79	+0.1
1,610,766	+		IAI47_07605	0.83	-1.0
1,610,767	-		IAI47_07605	0.83	-0.8
1,610,856	+				-2.3
1,610,856	+				-1.1
1,610,856	+				+0.9
1,610,856	+				+0.6
1,610,857	-				+1.2
1,610,857	-				+0.0
1,610,857	-				-0.2
1,610,900	+				-1.7
1,610,900	+				+0.1
1,610,926	+				-1.2
1,610,926	+				-1.0
1,610,927	-				+1.0
1,610,927	-				-1.1