Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02765 and IAI47_02770 are separated by 62 nucleotides IAI47_02770 and IAI47_02775 are separated by 294 nucleotides IAI47_02775 and IAI47_02780 are separated by 13 nucleotides IAI47_02780 and IAI47_02785 are separated by 2 nucleotides IAI47_02785 and IAI47_02790 are separated by 127 nucleotides
IAI47_02765: IAI47_02765 - metalloprotease PmbA, at 573,624 to 574,976
_02765
IAI47_02770: IAI47_02770 - cytochrome b562, at 575,039 to 575,425
_02770
IAI47_02775: IAI47_02775 - glycine dehydrogenase, at 575,720 to 576,055
_02775
IAI47_02780: IAI47_02780 - hypothetical protein, at 576,069 to 576,425
_02780
IAI47_02785: IAI47_02785 - DUF4312 family protein, at 576,428 to 576,727
_02785
IAI47_02790: IAI47_02790 - DUF4311 domain-containing protein, at 576,855 to 577,631
_02790
Position (kb) 575
576
577 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 574.735 kb on + strand, within IAI47_02765 at 574.735 kb on + strand, within IAI47_02765 at 574.775 kb on + strand, within IAI47_02765 at 574.785 kb on + strand, within IAI47_02765 at 574.785 kb on + strand, within IAI47_02765 at 574.785 kb on + strand, within IAI47_02765 at 574.786 kb on - strand, within IAI47_02765 at 574.786 kb on - strand, within IAI47_02765 at 574.786 kb on - strand, within IAI47_02765 at 574.826 kb on + strand, within IAI47_02765 at 574.854 kb on - strand at 574.854 kb on - strand at 574.854 kb on - strand at 574.908 kb on - strand at 574.922 kb on + strand at 574.922 kb on + strand at 574.922 kb on + strand at 574.926 kb on - strand at 574.926 kb on - strand at 574.945 kb on + strand at 574.945 kb on + strand at 574.945 kb on + strand at 574.946 kb on - strand at 574.946 kb on - strand at 574.964 kb on - strand at 574.974 kb on + strand at 574.974 kb on + strand at 574.974 kb on + strand at 574.974 kb on + strand at 574.975 kb on - strand at 574.975 kb on - strand at 574.975 kb on - strand at 574.975 kb on - strand at 575.034 kb on + strand at 575.035 kb on - strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.099 kb on + strand, within IAI47_02770 at 575.100 kb on - strand, within IAI47_02770 at 575.122 kb on + strand, within IAI47_02770 at 575.122 kb on + strand, within IAI47_02770 at 575.243 kb on - strand, within IAI47_02770 at 575.266 kb on + strand, within IAI47_02770 at 575.266 kb on + strand, within IAI47_02770 at 575.267 kb on - strand, within IAI47_02770 at 575.285 kb on + strand, within IAI47_02770 at 575.286 kb on - strand, within IAI47_02770 at 575.401 kb on + strand at 575.401 kb on + strand at 575.402 kb on - strand at 575.402 kb on - strand at 575.410 kb on + strand at 575.410 kb on + strand at 575.411 kb on - strand at 575.475 kb on - strand at 575.475 kb on - strand at 575.477 kb on + strand at 575.488 kb on - strand at 575.533 kb on + strand at 575.533 kb on + strand at 575.533 kb on + strand at 575.533 kb on + strand at 575.534 kb on - strand at 575.534 kb on - strand at 575.540 kb on + strand at 575.561 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.631 kb on - strand at 575.631 kb on - strand at 575.631 kb on - strand at 575.631 kb on - strand at 575.675 kb on - strand at 575.713 kb on + strand at 575.713 kb on + strand at 575.713 kb on + strand at 575.713 kb on + strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.729 kb on - strand at 575.744 kb on + strand at 575.744 kb on + strand at 575.744 kb on + strand at 575.744 kb on + strand at 575.745 kb on - strand at 575.745 kb on - strand at 575.745 kb on - strand at 575.745 kb on - strand at 575.787 kb on + strand, within IAI47_02775 at 575.787 kb on + strand, within IAI47_02775 at 575.788 kb on - strand, within IAI47_02775 at 575.810 kb on + strand, within IAI47_02775 at 575.810 kb on + strand, within IAI47_02775 at 575.811 kb on - strand, within IAI47_02775 at 575.811 kb on - strand, within IAI47_02775 at 575.938 kb on + strand, within IAI47_02775 at 575.938 kb on + strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 576.028 kb on + strand at 576.029 kb on - strand at 576.029 kb on - strand at 576.053 kb on + strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.074 kb on - strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.097 kb on + strand at 576.101 kb on + strand at 576.101 kb on + strand at 576.101 kb on + strand at 576.102 kb on - strand at 576.102 kb on - strand at 576.120 kb on - strand, within IAI47_02780 at 576.120 kb on - strand, within IAI47_02780 at 576.176 kb on + strand, within IAI47_02780 at 576.177 kb on - strand, within IAI47_02780 at 576.177 kb on - strand, within IAI47_02780 at 576.222 kb on - strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.279 kb on + strand, within IAI47_02780 at 576.279 kb on + strand, within IAI47_02780 at 576.280 kb on - strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.329 kb on + strand, within IAI47_02780 at 576.329 kb on + strand, within IAI47_02780 at 576.330 kb on - strand, within IAI47_02780 at 576.347 kb on - strand, within IAI47_02780 at 576.380 kb on - strand, within IAI47_02780 at 576.380 kb on - strand, within IAI47_02780 at 576.427 kb on + strand at 576.428 kb on - strand at 576.428 kb on - strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.446 kb on - strand at 576.446 kb on - strand at 576.475 kb on + strand, within IAI47_02785 at 576.712 kb on + strand at 576.713 kb on - strand at 576.725 kb on + strand at 576.726 kb on - strand at 576.726 kb on - strand at 576.741 kb on + strand at 576.742 kb on - strand at 576.793 kb on - strand at 576.829 kb on + strand at 576.829 kb on + strand at 576.830 kb on - strand at 576.846 kb on + strand at 576.846 kb on + strand at 576.847 kb on - strand at 576.847 kb on - strand at 576.847 kb on - strand at 576.848 kb on - strand at 576.974 kb on + strand, within IAI47_02790
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 574,735 + IAI47_02765 0.82 -0.1 574,735 + IAI47_02765 0.82 +1.0 574,775 + IAI47_02765 0.85 -1.3 574,785 + IAI47_02765 0.86 -0.6 574,785 + IAI47_02765 0.86 -0.3 574,785 + IAI47_02765 0.86 -0.3 574,786 - IAI47_02765 0.86 -0.0 574,786 - IAI47_02765 0.86 -0.8 574,786 - IAI47_02765 0.86 +0.4 574,826 + IAI47_02765 0.89 -0.2 574,854 - -1.5 574,854 - +0.0 574,854 - -0.2 574,908 - -0.3 574,922 + +0.5 574,922 + -1.8 574,922 + +0.1 574,926 - +1.4 574,926 - +0.2 574,945 + -0.6 574,945 + -1.2 574,945 + -1.2 574,946 - -2.0 574,946 - +0.3 574,964 - +0.3 574,974 + +0.2 574,974 + +3.7 574,974 + +0.4 574,974 + -0.6 574,975 - +0.1 574,975 - -1.1 574,975 - +1.0 574,975 - -1.2 575,034 + -0.6 575,035 - +0.3 575,044 + +2.9 575,044 + -0.1 575,044 + -0.6 575,044 + +0.1 575,044 + +1.0 575,044 + +0.2 575,044 + +3.5 575,045 - +1.8 575,045 - -1.5 575,045 - +3.9 575,045 - -1.0 575,045 - -0.7 575,045 - +1.3 575,045 - -0.8 575,045 - +1.0 575,045 - -1.1 575,045 - +1.1 575,045 - +0.1 575,045 - -0.8 575,099 + IAI47_02770 0.16 -1.0 575,100 - IAI47_02770 0.16 -1.6 575,122 + IAI47_02770 0.21 -0.9 575,122 + IAI47_02770 0.21 -2.1 575,243 - IAI47_02770 0.53 -0.5 575,266 + IAI47_02770 0.59 +0.3 575,266 + IAI47_02770 0.59 -2.2 575,267 - IAI47_02770 0.59 -1.1 575,285 + IAI47_02770 0.64 -0.2 575,286 - IAI47_02770 0.64 -0.6 575,401 + +1.1 575,401 + -0.9 575,402 - +0.2 575,402 - +0.9 575,410 + -1.5 575,410 + +0.1 575,411 - +0.1 575,475 - -0.6 575,475 - +0.9 575,477 + +0.8 575,488 - +1.4 575,533 + +1.5 575,533 + +1.1 575,533 + +1.3 575,533 + +1.3 575,534 - -0.9 575,534 - -1.1 575,540 + -0.3 575,561 + +1.1 575,630 + -1.0 575,630 + +0.4 575,630 + +1.3 575,630 + +1.2 575,630 + -0.0 575,630 + -0.9 575,631 - +1.4 575,631 - +0.6 575,631 - -1.0 575,631 - +0.5 575,675 - -0.5 575,713 + +1.2 575,713 + +0.2 575,713 + +0.7 575,713 + +0.7 575,714 - -0.3 575,714 - -2.6 575,714 - -0.2 575,714 - -1.4 575,714 - -2.7 575,729 - -1.1 575,744 + +0.7 575,744 + -1.2 575,744 + +0.2 575,744 + +4.3 575,745 - +0.2 575,745 - +0.1 575,745 - -1.6 575,745 - -2.0 575,787 + IAI47_02775 0.20 +0.7 575,787 + IAI47_02775 0.20 +0.8 575,788 - IAI47_02775 0.20 -1.0 575,810 + IAI47_02775 0.27 +1.9 575,810 + IAI47_02775 0.27 -0.5 575,811 - IAI47_02775 0.27 +0.2 575,811 - IAI47_02775 0.27 -0.9 575,938 + IAI47_02775 0.65 +0.7 575,938 + IAI47_02775 0.65 +0.7 575,939 - IAI47_02775 0.65 -0.0 575,939 - IAI47_02775 0.65 +2.4 575,939 - IAI47_02775 0.65 -1.1 576,028 + +0.1 576,029 - +0.1 576,029 - -0.6 576,053 + +0.7 576,054 - -2.6 576,054 - +1.0 576,054 - -1.9 576,054 - -2.1 576,073 + -0.1 576,073 + +2.0 576,073 + -0.7 576,073 + +2.4 576,073 + +0.7 576,073 + -0.5 576,074 - -0.7 576,079 + -0.8 576,079 + -0.2 576,079 + +1.1 576,079 + +1.5 576,080 - -0.1 576,080 - -0.5 576,080 - -2.1 576,080 - -0.6 576,080 - +0.2 576,080 - +0.2 576,097 + -1.7 576,101 + -1.2 576,101 + -1.1 576,101 + -2.2 576,102 - +0.9 576,102 - -0.2 576,120 - IAI47_02780 0.14 -1.0 576,120 - IAI47_02780 0.14 -1.2 576,176 + IAI47_02780 0.30 +0.7 576,177 - IAI47_02780 0.30 -0.8 576,177 - IAI47_02780 0.30 +0.2 576,222 - IAI47_02780 0.43 +1.1 576,273 + IAI47_02780 0.57 +0.9 576,273 + IAI47_02780 0.57 -1.3 576,273 + IAI47_02780 0.57 -1.9 576,273 + IAI47_02780 0.57 -1.6 576,273 + IAI47_02780 0.57 +0.5 576,274 - IAI47_02780 0.57 +1.1 576,274 - IAI47_02780 0.57 -0.0 576,274 - IAI47_02780 0.57 -0.6 576,274 - IAI47_02780 0.57 +1.5 576,274 - IAI47_02780 0.57 +0.4 576,274 - IAI47_02780 0.57 -0.6 576,274 - IAI47_02780 0.57 +3.3 576,274 - IAI47_02780 0.57 +1.0 576,274 - IAI47_02780 0.57 +0.3 576,274 - IAI47_02780 0.57 -1.1 576,274 - IAI47_02780 0.57 -0.2 576,279 + IAI47_02780 0.59 -1.5 576,279 + IAI47_02780 0.59 -0.3 576,280 - IAI47_02780 0.59 +2.5 576,296 + IAI47_02780 0.64 -0.1 576,296 + IAI47_02780 0.64 +0.1 576,296 + IAI47_02780 0.64 -0.9 576,296 + IAI47_02780 0.64 +0.8 576,296 + IAI47_02780 0.64 -2.1 576,297 - IAI47_02780 0.64 +0.3 576,297 - IAI47_02780 0.64 -2.0 576,297 - IAI47_02780 0.64 +1.4 576,297 - IAI47_02780 0.64 +2.7 576,329 + IAI47_02780 0.73 -0.3 576,329 + IAI47_02780 0.73 +0.2 576,330 - IAI47_02780 0.73 -1.7 576,347 - IAI47_02780 0.78 +0.7 576,380 - IAI47_02780 0.87 +0.0 576,380 - IAI47_02780 0.87 -0.1 576,427 + +0.6 576,428 - +1.7 576,428 - -0.6 576,440 + -0.2 576,440 + +0.2 576,440 + -0.5 576,440 + +0.0 576,440 + +0.1 576,440 + +0.5 576,440 + +1.1 576,441 - +0.2 576,441 - +1.1 576,441 - +0.3 576,441 - -0.2 576,441 - -0.3 576,441 - +0.8 576,446 - +0.0 576,446 - -0.1 576,475 + IAI47_02785 0.16 -2.0 576,712 + -1.5 576,713 - +2.7 576,725 + +1.6 576,726 - +0.3 576,726 - +0.0 576,741 + +0.9 576,742 - +1.8 576,793 - -1.1 576,829 + +0.2 576,829 + +1.0 576,830 - +0.6 576,846 + +0.9 576,846 + +0.2 576,847 - -0.6 576,847 - -0.4 576,847 - -0.3 576,848 - +0.4 576,974 + IAI47_02790 0.15 +1.0
Or see this region's nucleotide sequence