Strain Fitness in Pantoea sp. MT58 around IAI47_02760

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02755 and IAI47_02760 are separated by 130 nucleotidesIAI47_02760 and IAI47_02765 are separated by 102 nucleotides IAI47_02755: IAI47_02755 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 571,493 to 572,845 _02755 IAI47_02760: IAI47_02760 - ribosome-associated protein, at 572,976 to 573,521 _02760 IAI47_02765: IAI47_02765 - metalloprotease PmbA, at 573,624 to 574,976 _02765 Position (kb) 572 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 571.976 kb on + strand, within IAI47_02755at 571.976 kb on + strand, within IAI47_02755at 571.976 kb on + strand, within IAI47_02755at 571.976 kb on + strand, within IAI47_02755at 571.976 kb on + strand, within IAI47_02755at 571.977 kb on - strand, within IAI47_02755at 571.977 kb on - strand, within IAI47_02755at 572.018 kb on + strand, within IAI47_02755at 572.018 kb on + strand, within IAI47_02755at 572.019 kb on - strand, within IAI47_02755at 572.019 kb on - strand, within IAI47_02755at 572.165 kb on - strand, within IAI47_02755at 572.178 kb on + strand, within IAI47_02755at 572.178 kb on + strand, within IAI47_02755at 572.416 kb on + strand, within IAI47_02755at 572.416 kb on + strand, within IAI47_02755at 572.416 kb on + strand, within IAI47_02755at 572.417 kb on - strand, within IAI47_02755at 572.417 kb on - strand, within IAI47_02755at 572.417 kb on - strand, within IAI47_02755at 572.471 kb on + strand, within IAI47_02755at 572.471 kb on + strand, within IAI47_02755at 572.471 kb on + strand, within IAI47_02755at 572.471 kb on + strand, within IAI47_02755at 572.471 kb on + strand, within IAI47_02755at 572.472 kb on - strand, within IAI47_02755at 572.472 kb on - strand, within IAI47_02755at 572.472 kb on - strand, within IAI47_02755at 572.531 kb on - strand, within IAI47_02755at 572.551 kb on + strand, within IAI47_02755at 572.551 kb on + strand, within IAI47_02755at 572.551 kb on + strand, within IAI47_02755at 572.563 kb on - strand, within IAI47_02755at 572.563 kb on - strand, within IAI47_02755at 572.665 kb on + strand, within IAI47_02755at 572.665 kb on + strand, within IAI47_02755at 572.666 kb on - strand, within IAI47_02755at 572.666 kb on - strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.701 kb on + strand, within IAI47_02755at 572.702 kb on - strand, within IAI47_02755at 572.702 kb on - strand, within IAI47_02755at 572.702 kb on - strand, within IAI47_02755at 572.734 kb on + strandat 572.735 kb on - strandat 572.813 kb on - strandat 572.846 kb on + strandat 572.846 kb on + strandat 572.847 kb on - strandat 572.871 kb on + strandat 572.872 kb on - strandat 572.872 kb on - strandat 572.892 kb on + strandat 572.978 kb on - strandat 572.978 kb on - strandat 572.978 kb on - strandat 573.005 kb on - strandat 573.082 kb on - strand, within IAI47_02760at 573.249 kb on + strand, within IAI47_02760at 573.453 kb on - strand, within IAI47_02760at 573.554 kb on - strandat 573.596 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.617 kb on + strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.618 kb on - strandat 573.623 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.643 kb on + strandat 573.644 kb on - strandat 573.644 kb on - strandat 573.644 kb on - strandat 573.644 kb on - strandat 573.644 kb on - strandat 573.647 kb on + strandat 573.647 kb on + strandat 573.647 kb on + strandat 573.647 kb on + strandat 573.647 kb on + strandat 573.648 kb on - strandat 573.648 kb on - strandat 573.648 kb on - strandat 573.648 kb on - strandat 573.715 kb on + strandat 573.715 kb on + strandat 573.715 kb on + strandat 573.715 kb on + strandat 573.716 kb on - strandat 573.716 kb on - strandat 573.716 kb on - strandat 573.716 kb on - strandat 573.742 kb on + strandat 573.746 kb on + strandat 573.747 kb on - strandat 573.747 kb on - strandat 573.777 kb on + strand, within IAI47_02765at 573.834 kb on + strand, within IAI47_02765at 573.834 kb on + strand, within IAI47_02765at 573.834 kb on + strand, within IAI47_02765at 573.835 kb on - strand, within IAI47_02765at 573.835 kb on - strand, within IAI47_02765at 573.835 kb on - strand, within IAI47_02765at 573.835 kb on - strand, within IAI47_02765at 573.848 kb on + strand, within IAI47_02765at 573.848 kb on + strand, within IAI47_02765at 573.927 kb on + strand, within IAI47_02765at 573.970 kb on + strand, within IAI47_02765at 573.971 kb on - strand, within IAI47_02765at 573.978 kb on + strand, within IAI47_02765at 573.978 kb on + strand, within IAI47_02765at 573.979 kb on - strand, within IAI47_02765at 573.979 kb on - strand, within IAI47_02765at 573.979 kb on - strand, within IAI47_02765at 574.002 kb on + strand, within IAI47_02765at 574.002 kb on + strand, within IAI47_02765at 574.002 kb on + strand, within IAI47_02765at 574.003 kb on - strand, within IAI47_02765at 574.085 kb on + strand, within IAI47_02765at 574.085 kb on + strand, within IAI47_02765at 574.086 kb on - strand, within IAI47_02765at 574.086 kb on - strand, within IAI47_02765at 574.086 kb on - strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.116 kb on - strand, within IAI47_02765at 574.116 kb on - strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.167 kb on + strand, within IAI47_02765at 574.167 kb on + strand, within IAI47_02765at 574.168 kb on - strand, within IAI47_02765at 574.223 kb on + strand, within IAI47_02765at 574.237 kb on - strand, within IAI47_02765at 574.242 kb on + strand, within IAI47_02765at 574.242 kb on + strand, within IAI47_02765at 574.242 kb on + strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.310 kb on + strand, within IAI47_02765at 574.432 kb on - strand, within IAI47_02765at 574.432 kb on - strand, within IAI47_02765at 574.436 kb on + strand, within IAI47_02765at 574.437 kb on - strand, within IAI47_02765at 574.437 kb on - strand, within IAI47_02765at 574.493 kb on + strand, within IAI47_02765at 574.493 kb on + strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.496 kb on + strand, within IAI47_02765at 574.496 kb on + strand, within IAI47_02765at 574.496 kb on + strand, within IAI47_02765at 574.497 kb on - strand, within IAI47_02765

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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571,976 + IAI47_02755 0.36 +0.6
571,976 + IAI47_02755 0.36 -0.2
571,976 + IAI47_02755 0.36 -0.5
571,976 + IAI47_02755 0.36 -0.8
571,976 + IAI47_02755 0.36 +0.4
571,977 - IAI47_02755 0.36 +1.8
571,977 - IAI47_02755 0.36 +0.7
572,018 + IAI47_02755 0.39 -0.6
572,018 + IAI47_02755 0.39 -1.0
572,019 - IAI47_02755 0.39 -0.9
572,019 - IAI47_02755 0.39 +1.5
572,165 - IAI47_02755 0.50 -1.6
572,178 + IAI47_02755 0.51 -0.4
572,178 + IAI47_02755 0.51 +0.6
572,416 + IAI47_02755 0.68 +1.0
572,416 + IAI47_02755 0.68 +0.3
572,416 + IAI47_02755 0.68 +0.1
572,417 - IAI47_02755 0.68 +0.2
572,417 - IAI47_02755 0.68 +2.6
572,417 - IAI47_02755 0.68 -0.9
572,471 + IAI47_02755 0.72 -1.4
572,471 + IAI47_02755 0.72 -0.8
572,471 + IAI47_02755 0.72 +2.3
572,471 + IAI47_02755 0.72 -1.0
572,471 + IAI47_02755 0.72 -1.8
572,472 - IAI47_02755 0.72 +1.4
572,472 - IAI47_02755 0.72 +0.8
572,472 - IAI47_02755 0.72 -0.2
572,531 - IAI47_02755 0.77 +0.8
572,551 + IAI47_02755 0.78 -0.2
572,551 + IAI47_02755 0.78 +0.4
572,551 + IAI47_02755 0.78 -0.8
572,563 - IAI47_02755 0.79 +0.5
572,563 - IAI47_02755 0.79 +1.3
572,665 + IAI47_02755 0.87 -0.7
572,665 + IAI47_02755 0.87 -0.6
572,666 - IAI47_02755 0.87 -0.4
572,666 - IAI47_02755 0.87 -1.7
572,701 + IAI47_02755 0.89 -0.6
572,701 + IAI47_02755 0.89 -2.2
572,701 + IAI47_02755 0.89 -0.2
572,701 + IAI47_02755 0.89 -0.8
572,701 + IAI47_02755 0.89 +0.7
572,701 + IAI47_02755 0.89 -0.5
572,701 + IAI47_02755 0.89 -0.3
572,701 + IAI47_02755 0.89 -1.5
572,702 - IAI47_02755 0.89 -0.7
572,702 - IAI47_02755 0.89 -1.2
572,702 - IAI47_02755 0.89 +0.0
572,734 + -2.8
572,735 - +0.8
572,813 - -1.6
572,846 + +0.9
572,846 + -0.0
572,847 - +0.1
572,871 + -1.1
572,872 - +1.9
572,872 - +1.2
572,892 + -0.4
572,978 - +0.0
572,978 - -0.3
572,978 - +1.6
573,005 - -0.5
573,082 - IAI47_02760 0.19 +0.4
573,249 + IAI47_02760 0.50 +1.1
573,453 - IAI47_02760 0.87 +0.7
573,554 - +4.0
573,596 + -0.6
573,617 + -0.3
573,617 + -0.1
573,617 + -0.5
573,617 + -0.5
573,617 + +1.7
573,617 + -0.2
573,617 + -1.3
573,617 + -0.5
573,618 - -0.1
573,618 - -0.2
573,618 - -0.2
573,618 - -1.9
573,618 - +0.6
573,618 - +0.2
573,618 - -0.8
573,618 - -0.5
573,623 + +0.0
573,643 + -0.4
573,643 + -0.6
573,643 + -1.0
573,643 + +0.1
573,643 + -0.0
573,643 + -0.3
573,643 + -0.4
573,643 + -0.0
573,643 + -0.6
573,644 - +0.9
573,644 - -1.3
573,644 - +1.1
573,644 - +0.9
573,644 - -0.9
573,647 + -0.7
573,647 + -0.5
573,647 + -0.0
573,647 + -0.4
573,647 + -1.5
573,648 - +0.3
573,648 - +0.4
573,648 - +0.6
573,648 - -0.5
573,715 + -0.0
573,715 + -1.9
573,715 + +0.9
573,715 + -1.9
573,716 - -1.4
573,716 - -1.7
573,716 - +1.0
573,716 - +0.6
573,742 + -1.6
573,746 + -1.6
573,747 - -0.7
573,747 - -0.3
573,777 + IAI47_02765 0.11 -0.3
573,834 + IAI47_02765 0.16 -1.0
573,834 + IAI47_02765 0.16 -0.8
573,834 + IAI47_02765 0.16 -0.1
573,835 - IAI47_02765 0.16 +0.3
573,835 - IAI47_02765 0.16 +0.3
573,835 - IAI47_02765 0.16 +0.4
573,835 - IAI47_02765 0.16 -0.1
573,848 + IAI47_02765 0.17 +0.0
573,848 + IAI47_02765 0.17 -0.7
573,927 + IAI47_02765 0.22 -1.0
573,970 + IAI47_02765 0.26 -0.2
573,971 - IAI47_02765 0.26 +0.0
573,978 + IAI47_02765 0.26 +0.3
573,978 + IAI47_02765 0.26 +0.1
573,979 - IAI47_02765 0.26 -0.1
573,979 - IAI47_02765 0.26 -0.6
573,979 - IAI47_02765 0.26 +2.0
574,002 + IAI47_02765 0.28 +0.2
574,002 + IAI47_02765 0.28 +0.0
574,002 + IAI47_02765 0.28 +3.7
574,003 - IAI47_02765 0.28 -2.0
574,085 + IAI47_02765 0.34 +0.5
574,085 + IAI47_02765 0.34 +2.3
574,086 - IAI47_02765 0.34 +0.4
574,086 - IAI47_02765 0.34 +0.3
574,086 - IAI47_02765 0.34 -2.0
574,088 + IAI47_02765 0.34 -0.6
574,088 + IAI47_02765 0.34 -0.8
574,088 + IAI47_02765 0.34 +0.9
574,088 + IAI47_02765 0.34 -3.1
574,088 + IAI47_02765 0.34 +2.1
574,089 - IAI47_02765 0.34 +0.7
574,089 - IAI47_02765 0.34 -1.6
574,089 - IAI47_02765 0.34 +0.9
574,089 - IAI47_02765 0.34 +0.0
574,116 - IAI47_02765 0.36 -0.3
574,116 - IAI47_02765 0.36 +0.2
574,154 + IAI47_02765 0.39 +1.3
574,154 + IAI47_02765 0.39 +0.2
574,154 + IAI47_02765 0.39 -0.5
574,154 + IAI47_02765 0.39 +0.7
574,154 + IAI47_02765 0.39 -0.0
574,154 + IAI47_02765 0.39 -0.8
574,154 + IAI47_02765 0.39 +1.8
574,155 - IAI47_02765 0.39 -1.0
574,155 - IAI47_02765 0.39 -0.1
574,155 - IAI47_02765 0.39 -2.0
574,155 - IAI47_02765 0.39 -1.2
574,155 - IAI47_02765 0.39 -1.0
574,155 - IAI47_02765 0.39 +0.2
574,167 + IAI47_02765 0.40 -0.9
574,167 + IAI47_02765 0.40 +0.2
574,168 - IAI47_02765 0.40 +0.6
574,223 + IAI47_02765 0.44 +0.6
574,237 - IAI47_02765 0.45 -2.3
574,242 + IAI47_02765 0.46 -0.6
574,242 + IAI47_02765 0.46 -0.5
574,242 + IAI47_02765 0.46 +0.6
574,243 - IAI47_02765 0.46 +0.2
574,243 - IAI47_02765 0.46 +0.8
574,243 - IAI47_02765 0.46 +0.4
574,243 - IAI47_02765 0.46 +1.7
574,243 - IAI47_02765 0.46 -1.8
574,243 - IAI47_02765 0.46 +0.1
574,244 + IAI47_02765 0.46 -0.8
574,244 + IAI47_02765 0.46 +2.5
574,244 + IAI47_02765 0.46 +0.5
574,244 + IAI47_02765 0.46 +1.8
574,245 - IAI47_02765 0.46 +0.9
574,245 - IAI47_02765 0.46 +0.4
574,245 - IAI47_02765 0.46 +0.3
574,245 - IAI47_02765 0.46 +1.5
574,245 - IAI47_02765 0.46 -0.3
574,310 + IAI47_02765 0.51 -0.4
574,432 - IAI47_02765 0.60 -0.7
574,432 - IAI47_02765 0.60 -0.5
574,436 + IAI47_02765 0.60 -2.5
574,437 - IAI47_02765 0.60 -2.2
574,437 - IAI47_02765 0.60 -0.1
574,493 + IAI47_02765 0.64 -0.1
574,493 + IAI47_02765 0.64 -0.8
574,494 - IAI47_02765 0.64 -0.3
574,494 - IAI47_02765 0.64 +0.2
574,494 - IAI47_02765 0.64 -1.5
574,494 - IAI47_02765 0.64 +0.9
574,496 + IAI47_02765 0.64 -1.3
574,496 + IAI47_02765 0.64 -0.3
574,496 + IAI47_02765 0.64 +1.7
574,497 - IAI47_02765 0.65 +0.3

Or see this region's nucleotide sequence