Strain Fitness in Pantoea sp. MT58 around IAI47_01115

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_01110 and IAI47_01115 overlap by 11 nucleotidesIAI47_01115 and IAI47_01120 are separated by 316 nucleotides IAI47_01110: IAI47_01110 - PLP-dependent aminotransferase family protein, at 238,878 to 240,320 _01110 IAI47_01115: IAI47_01115 - DUF1158 domain-containing protein, at 240,310 to 240,552 _01115 IAI47_01120: IAI47_01120 - manganese efflux pump MntP, at 240,869 to 241,444 _01120 Position (kb) 240 241Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 239.340 kb on + strand, within IAI47_01110at 239.363 kb on - strand, within IAI47_01110at 239.363 kb on - strand, within IAI47_01110at 239.363 kb on - strand, within IAI47_01110at 239.389 kb on - strand, within IAI47_01110at 239.435 kb on + strand, within IAI47_01110at 239.436 kb on - strand, within IAI47_01110at 239.448 kb on + strand, within IAI47_01110at 239.554 kb on + strand, within IAI47_01110at 239.554 kb on + strand, within IAI47_01110at 239.555 kb on - strand, within IAI47_01110at 239.555 kb on - strand, within IAI47_01110at 239.692 kb on + strand, within IAI47_01110at 239.745 kb on + strand, within IAI47_01110at 239.754 kb on + strand, within IAI47_01110at 239.754 kb on + strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.879 kb on + strand, within IAI47_01110at 239.879 kb on + strand, within IAI47_01110at 239.879 kb on + strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.956 kb on + strand, within IAI47_01110at 239.957 kb on - strand, within IAI47_01110at 239.957 kb on - strand, within IAI47_01110at 239.957 kb on - strand, within IAI47_01110at 239.996 kb on + strand, within IAI47_01110at 239.996 kb on + strand, within IAI47_01110at 239.996 kb on + strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 240.027 kb on + strand, within IAI47_01110at 240.027 kb on + strand, within IAI47_01110at 240.027 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.070 kb on - strand, within IAI47_01110at 240.116 kb on - strand, within IAI47_01110at 240.125 kb on + strand, within IAI47_01110at 240.126 kb on - strand, within IAI47_01110at 240.195 kb on + strandat 240.346 kb on - strand, within IAI47_01115at 240.359 kb on - strand, within IAI47_01115at 240.359 kb on - strand, within IAI47_01115at 240.370 kb on + strand, within IAI47_01115at 240.371 kb on - strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.402 kb on - strand, within IAI47_01115at 240.402 kb on - strand, within IAI47_01115at 240.402 kb on - strand, within IAI47_01115at 240.421 kb on + strand, within IAI47_01115at 240.421 kb on + strand, within IAI47_01115at 240.422 kb on - strand, within IAI47_01115at 240.451 kb on + strand, within IAI47_01115at 240.546 kb on + strandat 240.546 kb on + strandat 240.546 kb on + strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.566 kb on + strandat 240.566 kb on + strandat 240.566 kb on + strandat 240.567 kb on - strandat 240.570 kb on + strandat 240.570 kb on + strandat 240.570 kb on + strandat 240.570 kb on + strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.721 kb on - strandat 240.721 kb on - strandat 240.804 kb on - strandat 240.863 kb on + strandat 240.864 kb on - strandat 240.878 kb on - strandat 240.888 kb on + strandat 240.888 kb on + strandat 240.904 kb on + strandat 240.904 kb on + strandat 240.905 kb on - strandat 240.905 kb on - strandat 240.905 kb on - strandat 240.967 kb on + strand, within IAI47_01120at 240.968 kb on - strand, within IAI47_01120at 240.982 kb on + strand, within IAI47_01120at 241.003 kb on + strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.059 kb on - strand, within IAI47_01120at 241.059 kb on - strand, within IAI47_01120at 241.118 kb on - strand, within IAI47_01120at 241.118 kb on - strand, within IAI47_01120at 241.118 kb on - strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.187 kb on - strand, within IAI47_01120at 241.187 kb on - strand, within IAI47_01120at 241.187 kb on - strand, within IAI47_01120at 241.257 kb on + strand, within IAI47_01120at 241.258 kb on - strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.327 kb on - strand, within IAI47_01120at 241.327 kb on - strand, within IAI47_01120at 241.329 kb on + strand, within IAI47_01120at 241.329 kb on + strand, within IAI47_01120at 241.330 kb on - strand, within IAI47_01120at 241.330 kb on - strand, within IAI47_01120at 241.330 kb on - strand, within IAI47_01120at 241.343 kb on - strand, within IAI47_01120at 241.374 kb on + strand, within IAI47_01120at 241.374 kb on + strand, within IAI47_01120at 241.375 kb on - strand, within IAI47_01120at 241.392 kb on + strandat 241.531 kb on + strandat 241.531 kb on + strandat 241.531 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
remove
239,340 + IAI47_01110 0.32 +0.2
239,363 - IAI47_01110 0.34 -0.7
239,363 - IAI47_01110 0.34 -0.7
239,363 - IAI47_01110 0.34 +0.6
239,389 - IAI47_01110 0.35 -0.3
239,435 + IAI47_01110 0.39 +0.4
239,436 - IAI47_01110 0.39 +0.9
239,448 + IAI47_01110 0.40 -0.6
239,554 + IAI47_01110 0.47 +1.0
239,554 + IAI47_01110 0.47 -1.8
239,555 - IAI47_01110 0.47 -1.1
239,555 - IAI47_01110 0.47 -2.0
239,692 + IAI47_01110 0.56 +0.1
239,745 + IAI47_01110 0.60 -1.8
239,754 + IAI47_01110 0.61 -0.4
239,754 + IAI47_01110 0.61 +1.2
239,755 - IAI47_01110 0.61 +0.7
239,755 - IAI47_01110 0.61 +0.7
239,755 - IAI47_01110 0.61 -0.7
239,755 - IAI47_01110 0.61 -0.3
239,755 - IAI47_01110 0.61 -0.3
239,755 - IAI47_01110 0.61 -0.6
239,879 + IAI47_01110 0.69 +2.8
239,879 + IAI47_01110 0.69 -0.6
239,879 + IAI47_01110 0.69 +0.8
239,880 - IAI47_01110 0.69 -0.0
239,880 - IAI47_01110 0.69 +0.3
239,880 - IAI47_01110 0.69 +0.1
239,880 - IAI47_01110 0.69 -1.1
239,956 + IAI47_01110 0.75 -2.2
239,957 - IAI47_01110 0.75 -0.4
239,957 - IAI47_01110 0.75 -1.5
239,957 - IAI47_01110 0.75 +0.3
239,996 + IAI47_01110 0.77 -0.2
239,996 + IAI47_01110 0.77 +2.0
239,996 + IAI47_01110 0.77 +0.4
239,997 - IAI47_01110 0.78 -2.2
239,997 - IAI47_01110 0.78 -1.1
239,997 - IAI47_01110 0.78 +0.1
239,997 - IAI47_01110 0.78 +0.9
239,997 - IAI47_01110 0.78 +0.3
240,027 + IAI47_01110 0.80 -0.2
240,027 + IAI47_01110 0.80 -0.8
240,027 + IAI47_01110 0.80 +0.5
240,069 + IAI47_01110 0.83 +0.4
240,069 + IAI47_01110 0.83 -1.4
240,069 + IAI47_01110 0.83 +0.2
240,069 + IAI47_01110 0.83 -0.1
240,069 + IAI47_01110 0.83 +2.1
240,070 - IAI47_01110 0.83 -1.1
240,116 - IAI47_01110 0.86 -1.3
240,125 + IAI47_01110 0.86 +1.0
240,126 - IAI47_01110 0.86 +2.5
240,195 + -1.1
240,346 - IAI47_01115 0.15 +1.7
240,359 - IAI47_01115 0.20 -1.2
240,359 - IAI47_01115 0.20 +1.0
240,370 + IAI47_01115 0.25 -0.0
240,371 - IAI47_01115 0.25 +0.3
240,399 + IAI47_01115 0.37 +0.2
240,399 + IAI47_01115 0.37 -0.5
240,399 + IAI47_01115 0.37 +1.6
240,399 + IAI47_01115 0.37 +2.3
240,400 - IAI47_01115 0.37 -0.1
240,400 - IAI47_01115 0.37 +1.8
240,400 - IAI47_01115 0.37 +3.8
240,400 - IAI47_01115 0.37 +0.0
240,401 + IAI47_01115 0.37 +1.0
240,401 + IAI47_01115 0.37 +1.9
240,401 + IAI47_01115 0.37 -0.3
240,401 + IAI47_01115 0.37 -0.8
240,401 + IAI47_01115 0.37 +0.4
240,401 + IAI47_01115 0.37 -2.2
240,401 + IAI47_01115 0.37 +1.2
240,402 - IAI47_01115 0.38 +0.7
240,402 - IAI47_01115 0.38 -0.3
240,402 - IAI47_01115 0.38 +0.3
240,421 + IAI47_01115 0.46 -1.5
240,421 + IAI47_01115 0.46 +0.4
240,422 - IAI47_01115 0.46 -0.6
240,451 + IAI47_01115 0.58 +0.9
240,546 + -0.5
240,546 + -1.3
240,546 + -1.1
240,547 - +1.2
240,547 - +1.0
240,547 - -0.6
240,547 - +0.7
240,547 - -0.2
240,566 + +0.4
240,566 + -2.5
240,566 + -2.3
240,567 - -0.3
240,570 + +0.5
240,570 + -1.0
240,570 + -0.8
240,570 + +0.1
240,571 - +0.3
240,571 - -0.3
240,571 - +0.5
240,571 - +0.2
240,571 - -0.9
240,571 - -1.0
240,721 - -0.8
240,721 - +0.9
240,804 - -0.0
240,863 + -2.0
240,864 - -0.1
240,878 - -2.4
240,888 + -0.2
240,888 + +0.7
240,904 + -0.9
240,904 + +1.8
240,905 - +0.0
240,905 - -0.6
240,905 - -0.4
240,967 + IAI47_01120 0.17 -0.1
240,968 - IAI47_01120 0.17 +1.3
240,982 + IAI47_01120 0.20 -0.0
241,003 + IAI47_01120 0.23 -0.6
241,004 - IAI47_01120 0.23 -1.6
241,004 - IAI47_01120 0.23 -1.6
241,004 - IAI47_01120 0.23 +1.1
241,004 - IAI47_01120 0.23 -1.9
241,058 + IAI47_01120 0.33 -0.2
241,058 + IAI47_01120 0.33 +2.6
241,058 + IAI47_01120 0.33 +0.8
241,058 + IAI47_01120 0.33 -1.1
241,058 + IAI47_01120 0.33 -0.5
241,059 - IAI47_01120 0.33 +0.5
241,059 - IAI47_01120 0.33 -0.2
241,118 - IAI47_01120 0.43 -0.6
241,118 - IAI47_01120 0.43 -0.3
241,118 - IAI47_01120 0.43 +2.3
241,186 + IAI47_01120 0.55 -0.6
241,186 + IAI47_01120 0.55 +3.5
241,186 + IAI47_01120 0.55 -0.5
241,186 + IAI47_01120 0.55 -0.5
241,187 - IAI47_01120 0.55 -1.2
241,187 - IAI47_01120 0.55 +0.1
241,187 - IAI47_01120 0.55 -0.0
241,257 + IAI47_01120 0.67 -2.3
241,258 - IAI47_01120 0.68 -0.6
241,267 + IAI47_01120 0.69 -0.3
241,267 + IAI47_01120 0.69 -0.5
241,267 + IAI47_01120 0.69 +0.2
241,267 + IAI47_01120 0.69 -0.7
241,267 + IAI47_01120 0.69 +1.2
241,268 - IAI47_01120 0.69 +1.0
241,268 - IAI47_01120 0.69 -0.5
241,268 - IAI47_01120 0.69 +0.9
241,268 - IAI47_01120 0.69 -1.0
241,326 + IAI47_01120 0.79 -1.0
241,326 + IAI47_01120 0.79 +0.2
241,326 + IAI47_01120 0.79 +2.7
241,326 + IAI47_01120 0.79 -0.4
241,326 + IAI47_01120 0.79 -0.8
241,326 + IAI47_01120 0.79 -0.7
241,327 - IAI47_01120 0.80 +1.3
241,327 - IAI47_01120 0.80 +0.2
241,329 + IAI47_01120 0.80 -0.3
241,329 + IAI47_01120 0.80 +0.1
241,330 - IAI47_01120 0.80 -0.4
241,330 - IAI47_01120 0.80 -1.8
241,330 - IAI47_01120 0.80 +1.1
241,343 - IAI47_01120 0.82 +2.4
241,374 + IAI47_01120 0.88 -0.4
241,374 + IAI47_01120 0.88 -0.6
241,375 - IAI47_01120 0.88 -1.1
241,392 + +0.8
241,531 + -1.4
241,531 + -1.2
241,531 + +0.6

Or see this region's nucleotide sequence