Strain Fitness in Pantoea sp. MT58 around IAI47_20065

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20055 and IAI47_20060 overlap by 4 nucleotidesIAI47_20060 and IAI47_20065 are separated by 156 nucleotidesIAI47_20065 and IAI47_20070 are separated by 74 nucleotides IAI47_20055: IAI47_20055 - non-canonical purine NTP pyrophosphatase, at 243,196 to 243,756 _20055 IAI47_20060: IAI47_20060 - SIR2 family protein, at 243,753 to 244,547 _20060 IAI47_20065: IAI47_20065 - YebG family protein, at 244,704 to 245,045 _20065 IAI47_20070: IAI47_20070 - Fic family protein, at 245,120 to 246,253 _20070 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 243.724 kb on - strandat 243.731 kb on + strandat 243.732 kb on - strandat 243.768 kb on - strandat 243.768 kb on - strandat 243.768 kb on - strandat 243.778 kb on - strandat 243.778 kb on - strandat 243.816 kb on - strandat 243.882 kb on + strand, within IAI47_20060at 243.882 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.906 kb on + strand, within IAI47_20060at 243.906 kb on + strand, within IAI47_20060at 243.906 kb on + strand, within IAI47_20060at 243.907 kb on - strand, within IAI47_20060at 243.907 kb on - strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 244.031 kb on + strand, within IAI47_20060at 244.032 kb on - strand, within IAI47_20060at 244.032 kb on - strand, within IAI47_20060at 244.040 kb on + strand, within IAI47_20060at 244.040 kb on + strand, within IAI47_20060at 244.066 kb on - strand, within IAI47_20060at 244.066 kb on - strand, within IAI47_20060at 244.073 kb on + strand, within IAI47_20060at 244.073 kb on + strand, within IAI47_20060at 244.073 kb on + strand, within IAI47_20060at 244.074 kb on - strand, within IAI47_20060at 244.074 kb on - strandat 244.074 kb on - strand, within IAI47_20060at 244.077 kb on + strand, within IAI47_20060at 244.077 kb on + strand, within IAI47_20060at 244.077 kb on + strand, within IAI47_20060at 244.078 kb on - strand, within IAI47_20060at 244.078 kb on - strand, within IAI47_20060at 244.078 kb on - strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.126 kb on - strand, within IAI47_20060at 244.127 kb on + strand, within IAI47_20060at 244.127 kb on + strand, within IAI47_20060at 244.127 kb on + strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.169 kb on + strand, within IAI47_20060at 244.170 kb on - strand, within IAI47_20060at 244.239 kb on + strand, within IAI47_20060at 244.239 kb on + strand, within IAI47_20060at 244.277 kb on + strand, within IAI47_20060at 244.277 kb on + strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.416 kb on + strand, within IAI47_20060at 244.417 kb on - strand, within IAI47_20060at 244.433 kb on + strand, within IAI47_20060at 244.434 kb on - strand, within IAI47_20060at 244.434 kb on - strand, within IAI47_20060at 244.434 kb on - strand, within IAI47_20060at 244.546 kb on - strandat 244.546 kb on - strandat 244.546 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.668 kb on - strandat 244.729 kb on + strandat 244.766 kb on + strand, within IAI47_20065at 244.767 kb on - strand, within IAI47_20065at 244.831 kb on + strand, within IAI47_20065at 244.831 kb on + strand, within IAI47_20065at 244.831 kb on + strand, within IAI47_20065at 244.832 kb on - strand, within IAI47_20065at 244.832 kb on - strand, within IAI47_20065at 244.913 kb on + strand, within IAI47_20065at 244.913 kb on + strand, within IAI47_20065at 244.915 kb on - strand, within IAI47_20065at 245.043 kb on + strandat 245.121 kb on + strandat 245.128 kb on + strandat 245.129 kb on - strandat 245.132 kb on + strandat 245.132 kb on + strandat 245.133 kb on - strandat 245.133 kb on - strandat 245.133 kb on - strandat 245.133 kb on - strandat 245.239 kb on + strand, within IAI47_20070at 245.239 kb on + strand, within IAI47_20070at 245.240 kb on - strand, within IAI47_20070at 245.243 kb on + strand, within IAI47_20070at 245.244 kb on - strand, within IAI47_20070at 245.276 kb on + strand, within IAI47_20070at 245.330 kb on + strand, within IAI47_20070at 245.331 kb on - strand, within IAI47_20070at 245.331 kb on - strand, within IAI47_20070at 245.345 kb on + strand, within IAI47_20070at 245.345 kb on + strand, within IAI47_20070at 245.345 kb on + strand, within IAI47_20070at 245.346 kb on - strand, within IAI47_20070at 245.346 kb on - strand, within IAI47_20070at 245.367 kb on - strand, within IAI47_20070at 245.468 kb on - strand, within IAI47_20070at 245.468 kb on - strand, within IAI47_20070at 245.468 kb on - strand, within IAI47_20070at 245.506 kb on - strand, within IAI47_20070at 245.506 kb on - strand, within IAI47_20070at 245.528 kb on + strand, within IAI47_20070at 245.528 kb on + strand, within IAI47_20070at 245.547 kb on + strand, within IAI47_20070at 245.548 kb on - strand, within IAI47_20070at 245.608 kb on + strand, within IAI47_20070at 245.636 kb on + strand, within IAI47_20070at 245.637 kb on - strand, within IAI47_20070at 245.637 kb on - strand, within IAI47_20070at 245.637 kb on - strand, within IAI47_20070at 245.676 kb on - strand, within IAI47_20070at 245.789 kb on + strand, within IAI47_20070at 245.789 kb on + strand, within IAI47_20070at 245.789 kb on + strand, within IAI47_20070at 245.789 kb on + strand, within IAI47_20070at 245.790 kb on - strand, within IAI47_20070at 245.790 kb on - strand, within IAI47_20070at 245.790 kb on - strand, within IAI47_20070at 245.852 kb on + strand, within IAI47_20070at 245.853 kb on - strand, within IAI47_20070at 245.853 kb on - strand, within IAI47_20070at 245.853 kb on - strand, within IAI47_20070at 245.853 kb on - strand, within IAI47_20070at 245.853 kb on - strand, within IAI47_20070at 245.853 kb on - strand, within IAI47_20070at 245.898 kb on - strand, within IAI47_20070at 245.985 kb on + strand, within IAI47_20070

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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243,724 - +3.3
243,731 + -0.9
243,732 - -0.0
243,768 - +0.2
243,768 - -1.4
243,768 - +0.4
243,778 - +0.9
243,778 - -0.9
243,816 - +0.9
243,882 + IAI47_20060 0.16 +1.0
243,882 + IAI47_20060 0.16 -0.1
243,902 + IAI47_20060 0.19 -0.8
243,902 + IAI47_20060 0.19 +0.8
243,902 + IAI47_20060 0.19 +0.1
243,902 + IAI47_20060 0.19 -1.8
243,902 + IAI47_20060 0.19 -0.9
243,902 + IAI47_20060 0.19 +0.2
243,902 + IAI47_20060 0.19 +0.1
243,903 - IAI47_20060 0.19 +1.8
243,903 - IAI47_20060 0.19 +0.2
243,903 - IAI47_20060 0.19 +0.9
243,903 - IAI47_20060 0.19 -0.6
243,906 + IAI47_20060 0.19 +0.1
243,906 + IAI47_20060 0.19 +0.6
243,906 + IAI47_20060 0.19 +0.1
243,907 - IAI47_20060 0.19 +0.7
243,907 - IAI47_20060 0.19 -0.4
243,936 + IAI47_20060 0.23 -0.4
243,936 + IAI47_20060 0.23 -0.5
243,936 + IAI47_20060 0.23 -1.1
243,936 + IAI47_20060 0.23 +1.3
243,936 + IAI47_20060 0.23 -0.3
243,936 + IAI47_20060 0.23 -0.1
243,937 - IAI47_20060 0.23 -1.6
243,937 - IAI47_20060 0.23 +1.3
243,937 - IAI47_20060 0.23 +0.6
243,937 - IAI47_20060 0.23 -1.7
243,937 - IAI47_20060 0.23 -0.4
243,937 - IAI47_20060 0.23 +0.8
244,031 + IAI47_20060 0.35 +0.3
244,032 - IAI47_20060 0.35 +2.4
244,032 - IAI47_20060 0.35 +0.3
244,040 + IAI47_20060 0.36 -0.6
244,040 + IAI47_20060 0.36 +0.6
244,066 - IAI47_20060 0.39 +0.1
244,066 - IAI47_20060 0.39 +0.9
244,073 + IAI47_20060 0.40 +0.2
244,073 + IAI47_20060 0.40 -1.8
244,073 + IAI47_20060 0.40 -1.5
244,074 - IAI47_20060 0.40 -0.4
244,074 - -0.2
244,074 - IAI47_20060 0.40 -0.0
244,077 + IAI47_20060 0.41 -0.6
244,077 + IAI47_20060 0.41 -0.2
244,077 + IAI47_20060 0.41 -1.1
244,078 - IAI47_20060 0.41 +1.1
244,078 - IAI47_20060 0.41 +0.6
244,078 - IAI47_20060 0.41 -0.7
244,122 + IAI47_20060 0.46 -0.1
244,122 + IAI47_20060 0.46 +0.3
244,122 + IAI47_20060 0.46 -1.1
244,122 + IAI47_20060 0.46 -2.4
244,123 - IAI47_20060 0.47 -1.1
244,123 - IAI47_20060 0.47 +0.1
244,123 - IAI47_20060 0.47 +1.2
244,123 - IAI47_20060 0.47 +1.5
244,123 - IAI47_20060 0.47 -0.8
244,123 - IAI47_20060 0.47 -0.6
244,123 - IAI47_20060 0.47 +0.1
244,125 + IAI47_20060 0.47 +0.2
244,125 + IAI47_20060 0.47 -0.0
244,125 + IAI47_20060 0.47 +2.6
244,125 + IAI47_20060 0.47 +0.1
244,126 - IAI47_20060 0.47 -2.0
244,127 + IAI47_20060 0.47 -1.6
244,127 + IAI47_20060 0.47 -0.2
244,127 + IAI47_20060 0.47 -1.1
244,128 - IAI47_20060 0.47 -0.4
244,128 - IAI47_20060 0.47 +0.5
244,128 - IAI47_20060 0.47 -2.2
244,128 - IAI47_20060 0.47 +0.6
244,128 - IAI47_20060 0.47 -0.5
244,169 + IAI47_20060 0.52 -1.4
244,170 - IAI47_20060 0.52 -1.6
244,239 + IAI47_20060 0.61 -2.0
244,239 + IAI47_20060 0.61 +1.3
244,277 + IAI47_20060 0.66 +0.9
244,277 + IAI47_20060 0.66 +1.8
244,278 - IAI47_20060 0.66 -0.3
244,278 - IAI47_20060 0.66 +2.4
244,278 - IAI47_20060 0.66 +0.1
244,278 - IAI47_20060 0.66 -0.4
244,416 + IAI47_20060 0.83 -0.4
244,417 - IAI47_20060 0.84 +1.4
244,433 + IAI47_20060 0.86 +0.3
244,434 - IAI47_20060 0.86 -0.1
244,434 - IAI47_20060 0.86 -1.5
244,434 - IAI47_20060 0.86 +1.7
244,546 - +0.1
244,546 - +0.7
244,546 - +0.4
244,636 - +0.4
244,636 - +1.2
244,636 - +3.9
244,636 - -1.3
244,636 - -0.9
244,668 - -0.9
244,729 + +0.9
244,766 + IAI47_20065 0.18 -1.3
244,767 - IAI47_20065 0.18 -0.7
244,831 + IAI47_20065 0.37 -2.0
244,831 + IAI47_20065 0.37 -1.2
244,831 + IAI47_20065 0.37 -0.6
244,832 - IAI47_20065 0.37 +0.7
244,832 - IAI47_20065 0.37 +0.3
244,913 + IAI47_20065 0.61 +0.8
244,913 + IAI47_20065 0.61 -0.8
244,915 - IAI47_20065 0.62 -0.4
245,043 + -0.4
245,121 + +2.3
245,128 + -1.5
245,129 - +0.7
245,132 + +0.3
245,132 + -0.7
245,133 - -0.2
245,133 - -0.1
245,133 - -0.6
245,133 - -1.8
245,239 + IAI47_20070 0.10 -1.4
245,239 + IAI47_20070 0.10 -0.7
245,240 - IAI47_20070 0.11 +0.1
245,243 + IAI47_20070 0.11 +0.6
245,244 - IAI47_20070 0.11 -2.4
245,276 + IAI47_20070 0.14 -0.2
245,330 + IAI47_20070 0.19 +0.7
245,331 - IAI47_20070 0.19 -1.1
245,331 - IAI47_20070 0.19 -0.4
245,345 + IAI47_20070 0.20 +0.6
245,345 + IAI47_20070 0.20 -1.9
245,345 + IAI47_20070 0.20 +1.8
245,346 - IAI47_20070 0.20 -0.6
245,346 - IAI47_20070 0.20 +0.3
245,367 - IAI47_20070 0.22 -0.2
245,468 - IAI47_20070 0.31 +0.3
245,468 - IAI47_20070 0.31 +0.2
245,468 - IAI47_20070 0.31 +0.2
245,506 - IAI47_20070 0.34 +0.4
245,506 - IAI47_20070 0.34 +0.9
245,528 + IAI47_20070 0.36 +0.2
245,528 + IAI47_20070 0.36 +1.4
245,547 + IAI47_20070 0.38 +0.5
245,548 - IAI47_20070 0.38 +1.2
245,608 + IAI47_20070 0.43 +0.8
245,636 + IAI47_20070 0.46 -0.4
245,637 - IAI47_20070 0.46 +0.8
245,637 - IAI47_20070 0.46 -0.8
245,637 - IAI47_20070 0.46 -0.5
245,676 - IAI47_20070 0.49 -0.7
245,789 + IAI47_20070 0.59 +0.4
245,789 + IAI47_20070 0.59 +0.4
245,789 + IAI47_20070 0.59 -0.4
245,789 + IAI47_20070 0.59 -0.3
245,790 - IAI47_20070 0.59 -1.2
245,790 - IAI47_20070 0.59 -0.3
245,790 - IAI47_20070 0.59 +0.4
245,852 + IAI47_20070 0.65 -0.4
245,853 - IAI47_20070 0.65 +0.5
245,853 - IAI47_20070 0.65 -0.3
245,853 - IAI47_20070 0.65 +1.4
245,853 - IAI47_20070 0.65 -1.0
245,853 - IAI47_20070 0.65 -0.9
245,853 - IAI47_20070 0.65 +1.3
245,898 - IAI47_20070 0.69 -0.8
245,985 + IAI47_20070 0.76 +0.6

Or see this region's nucleotide sequence