Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19360 and IAI47_19365 are separated by 162 nucleotides IAI47_19365 and IAI47_19370 are separated by 415 nucleotides
IAI47_19360: IAI47_19360 - HAMP domain-containing protein, at 96,746 to 98,050
_19360
IAI47_19365: IAI47_19365 - DUF1471 domain-containing protein, at 98,213 to 98,470
_19365
IAI47_19370: IAI47_19370 - MFS transporter, at 98,886 to 100,136
_19370
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.384 kb on + strand, within IAI47_19360 at 97.385 kb on - strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.413 kb on - strand, within IAI47_19360 at 97.577 kb on + strand, within IAI47_19360 at 97.577 kb on + strand, within IAI47_19360 at 97.578 kb on - strand, within IAI47_19360 at 97.620 kb on + strand, within IAI47_19360 at 97.620 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.637 kb on - strand, within IAI47_19360 at 97.638 kb on + strand, within IAI47_19360 at 97.638 kb on + strand, within IAI47_19360 at 97.639 kb on - strand, within IAI47_19360 at 97.680 kb on + strand, within IAI47_19360 at 97.681 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.714 kb on + strand, within IAI47_19360 at 97.715 kb on - strand, within IAI47_19360 at 97.715 kb on - strand, within IAI47_19360 at 97.747 kb on + strand, within IAI47_19360 at 97.748 kb on - strand, within IAI47_19360 at 97.759 kb on + strand, within IAI47_19360 at 97.760 kb on - strand, within IAI47_19360 at 97.822 kb on + strand, within IAI47_19360 at 97.822 kb on + strand, within IAI47_19360 at 97.822 kb on + strand, within IAI47_19360 at 97.824 kb on + strand, within IAI47_19360 at 97.824 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.941 kb on + strand at 97.971 kb on + strand at 98.055 kb on + strand at 98.055 kb on + strand at 98.067 kb on + strand at 98.067 kb on + strand at 98.067 kb on + strand at 98.068 kb on - strand at 98.068 kb on - strand at 98.116 kb on + strand at 98.116 kb on + strand at 98.116 kb on + strand at 98.116 kb on + strand at 98.127 kb on + strand at 98.142 kb on + strand at 98.142 kb on + strand at 98.142 kb on + strand at 98.142 kb on + strand at 98.143 kb on - strand at 98.143 kb on - strand at 98.143 kb on - strand at 98.169 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.244 kb on + strand, within IAI47_19365 at 98.244 kb on + strand, within IAI47_19365 at 98.245 kb on - strand, within IAI47_19365 at 98.245 kb on - strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.306 kb on - strand, within IAI47_19365 at 98.306 kb on - strand, within IAI47_19365 at 98.306 kb on - strand, within IAI47_19365 at 98.361 kb on + strand, within IAI47_19365 at 98.408 kb on + strand, within IAI47_19365 at 98.409 kb on - strand, within IAI47_19365 at 98.409 kb on - strand, within IAI47_19365 at 98.413 kb on + strand, within IAI47_19365 at 98.414 kb on - strand, within IAI47_19365 at 98.434 kb on + strand, within IAI47_19365 at 98.459 kb on - strand at 98.463 kb on - strand at 98.468 kb on + strand at 98.469 kb on - strand at 98.524 kb on + strand at 98.525 kb on - strand at 98.540 kb on + strand at 98.540 kb on + strand at 98.540 kb on + strand at 98.541 kb on - strand at 98.541 kb on - strand at 98.541 kb on - strand at 98.580 kb on + strand at 98.619 kb on + strand at 98.627 kb on + strand at 98.690 kb on - strand at 98.690 kb on - strand at 98.703 kb on - strand at 98.703 kb on - strand at 98.703 kb on - strand at 98.758 kb on + strand at 98.758 kb on + strand at 98.760 kb on + strand at 98.760 kb on + strand at 98.761 kb on - strand at 98.773 kb on + strand at 98.819 kb on + strand at 98.826 kb on - strand at 98.826 kb on - strand at 98.826 kb on - strand at 98.829 kb on - strand at 98.829 kb on - strand at 98.836 kb on + strand at 98.837 kb on - strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.855 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.874 kb on + strand at 98.880 kb on + strand at 98.880 kb on + strand at 98.929 kb on + strand at 98.981 kb on + strand at 98.982 kb on - strand at 98.992 kb on + strand at 98.992 kb on + strand at 98.992 kb on + strand at 98.992 kb on + strand at 98.993 kb on - strand at 98.993 kb on - strand at 98.993 kb on - strand at 98.999 kb on + strand at 98.999 kb on + strand at 99.000 kb on - strand at 99.000 kb on - strand at 99.004 kb on - strand at 99.004 kb on - strand at 99.004 kb on - strand at 99.053 kb on + strand, within IAI47_19370 at 99.053 kb on + strand, within IAI47_19370 at 99.053 kb on + strand, within IAI47_19370 at 99.053 kb on + strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.120 kb on + strand, within IAI47_19370 at 99.120 kb on + strand, within IAI47_19370 at 99.121 kb on - strand, within IAI47_19370 at 99.121 kb on - strand, within IAI47_19370 at 99.121 kb on - strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.351 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.360 kb on - strand, within IAI47_19370 at 99.433 kb on + strand, within IAI47_19370 at 99.434 kb on - strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.447 kb on - strand, within IAI47_19370 at 99.447 kb on - strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.452 kb on + strand, within IAI47_19370 at 99.452 kb on + strand, within IAI47_19370 at 99.453 kb on - strand, within IAI47_19370 at 99.453 kb on - strand, within IAI47_19370 at 99.468 kb on + strand, within IAI47_19370
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 97,384 + IAI47_19360 0.49 +0.4 97,385 - IAI47_19360 0.49 -0.3 97,412 + IAI47_19360 0.51 -1.3 97,412 + IAI47_19360 0.51 +0.8 97,412 + IAI47_19360 0.51 +0.5 97,413 - IAI47_19360 0.51 +0.6 97,577 + IAI47_19360 0.64 +1.0 97,577 + IAI47_19360 0.64 +1.1 97,578 - IAI47_19360 0.64 +1.8 97,620 + IAI47_19360 0.67 -1.6 97,620 + IAI47_19360 0.67 +1.8 97,636 + IAI47_19360 0.68 +0.4 97,636 + IAI47_19360 0.68 -1.1 97,636 + IAI47_19360 0.68 +0.2 97,636 + IAI47_19360 0.68 -1.2 97,637 - IAI47_19360 0.68 -0.1 97,638 + IAI47_19360 0.68 -0.8 97,638 + IAI47_19360 0.68 +0.4 97,639 - IAI47_19360 0.68 +0.4 97,680 + IAI47_19360 0.72 +0.2 97,681 - IAI47_19360 0.72 -1.0 97,712 - IAI47_19360 0.74 +0.2 97,712 - IAI47_19360 0.74 +0.6 97,712 - IAI47_19360 0.74 -0.6 97,714 + IAI47_19360 0.74 +1.7 97,715 - IAI47_19360 0.74 -0.6 97,715 - IAI47_19360 0.74 -0.6 97,747 + IAI47_19360 0.77 -1.1 97,748 - IAI47_19360 0.77 -1.2 97,759 + IAI47_19360 0.78 +0.3 97,760 - IAI47_19360 0.78 +2.5 97,822 + IAI47_19360 0.82 +1.8 97,822 + IAI47_19360 0.82 -0.3 97,822 + IAI47_19360 0.82 +1.0 97,824 + IAI47_19360 0.83 -0.6 97,824 + IAI47_19360 0.83 -0.1 97,868 + IAI47_19360 0.86 -0.7 97,868 + IAI47_19360 0.86 -1.3 97,868 + IAI47_19360 0.86 -0.0 97,868 + IAI47_19360 0.86 +1.5 97,868 + IAI47_19360 0.86 +1.8 97,868 + IAI47_19360 0.86 -1.3 97,868 + IAI47_19360 0.86 -1.6 97,868 + IAI47_19360 0.86 +0.1 97,869 - IAI47_19360 0.86 -1.2 97,869 - IAI47_19360 0.86 +0.1 97,869 - IAI47_19360 0.86 -0.8 97,869 - IAI47_19360 0.86 +1.2 97,869 - IAI47_19360 0.86 +0.1 97,869 - IAI47_19360 0.86 -0.4 97,869 - IAI47_19360 0.86 +0.9 97,869 - IAI47_19360 0.86 +0.1 97,869 - IAI47_19360 0.86 -1.3 97,869 - IAI47_19360 0.86 -0.2 97,869 - IAI47_19360 0.86 -1.7 97,869 - IAI47_19360 0.86 -2.2 97,941 + -0.6 97,971 + +0.1 98,055 + +0.3 98,055 + +0.7 98,067 + +1.6 98,067 + +0.7 98,067 + -0.9 98,068 - -1.4 98,068 - -0.6 98,116 + +2.2 98,116 + -1.7 98,116 + +0.8 98,116 + +1.3 98,127 + +0.9 98,142 + -0.0 98,142 + -0.3 98,142 + +1.0 98,142 + -0.2 98,143 - -1.1 98,143 - +0.4 98,143 - -0.5 98,169 + +2.5 98,212 + -0.7 98,212 + -1.6 98,212 + -0.3 98,212 + +0.3 98,212 + -0.3 98,213 - +0.4 98,213 - -1.7 98,213 - +0.8 98,213 - +0.7 98,213 - -1.6 98,244 + IAI47_19365 0.12 +0.6 98,244 + IAI47_19365 0.12 +1.4 98,245 - IAI47_19365 0.12 +0.9 98,245 - IAI47_19365 0.12 +1.7 98,305 + IAI47_19365 0.36 -0.7 98,305 + IAI47_19365 0.36 +0.6 98,305 + IAI47_19365 0.36 -0.3 98,305 + IAI47_19365 0.36 -1.9 98,305 + IAI47_19365 0.36 +0.9 98,305 + IAI47_19365 0.36 +1.3 98,306 - IAI47_19365 0.36 -1.7 98,306 - IAI47_19365 0.36 -1.5 98,306 - IAI47_19365 0.36 -1.2 98,361 + IAI47_19365 0.57 -0.6 98,408 + IAI47_19365 0.76 +0.6 98,409 - IAI47_19365 0.76 +0.6 98,409 - IAI47_19365 0.76 -0.8 98,413 + IAI47_19365 0.78 -2.3 98,414 - IAI47_19365 0.78 -0.5 98,434 + IAI47_19365 0.86 +2.4 98,459 - -0.7 98,463 - +1.5 98,468 + +0.5 98,469 - +0.8 98,524 + +0.9 98,525 - +1.2 98,540 + -0.1 98,540 + +1.7 98,540 + +0.1 98,541 - +0.7 98,541 - +0.1 98,541 - -0.8 98,580 + -1.8 98,619 + -1.2 98,627 + +1.4 98,690 - +0.3 98,690 - -0.3 98,703 - +0.1 98,703 - -0.5 98,703 - +1.6 98,758 + -0.5 98,758 + -0.4 98,760 + +2.2 98,760 + -0.1 98,761 - -0.2 98,773 + -0.2 98,819 + +0.8 98,826 - +0.6 98,826 - -0.1 98,826 - -0.5 98,829 - -0.7 98,829 - +0.5 98,836 + +1.2 98,837 - +0.4 98,854 + -0.2 98,854 + -1.5 98,854 + -0.8 98,854 + -0.8 98,854 + +0.3 98,854 + -0.2 98,854 + +1.0 98,855 - -0.5 98,858 - +2.2 98,858 - -0.9 98,874 + -0.6 98,880 + +1.1 98,880 + -1.0 98,929 + -0.7 98,981 + +1.2 98,982 - -0.6 98,992 + +2.3 98,992 + +0.9 98,992 + +1.5 98,992 + -0.3 98,993 - +0.4 98,993 - +0.5 98,993 - -1.4 98,999 + -0.4 98,999 + -0.4 99,000 - +2.4 99,000 - -1.2 99,004 - +0.4 99,004 - -1.1 99,004 - +0.5 99,053 + IAI47_19370 0.13 +1.0 99,053 + IAI47_19370 0.13 +0.3 99,053 + IAI47_19370 0.13 +0.8 99,053 + IAI47_19370 0.13 +3.0 99,054 - IAI47_19370 0.13 -0.0 99,054 - IAI47_19370 0.13 -0.2 99,054 - IAI47_19370 0.13 +0.4 99,054 - IAI47_19370 0.13 -0.6 99,054 - IAI47_19370 0.13 -1.3 99,120 + IAI47_19370 0.19 -1.5 99,120 + IAI47_19370 0.19 -1.7 99,121 - IAI47_19370 0.19 +1.4 99,121 - IAI47_19370 0.19 -0.6 99,121 - IAI47_19370 0.19 -0.1 99,197 + IAI47_19370 0.25 +0.8 99,197 + IAI47_19370 0.25 -0.3 99,197 + IAI47_19370 0.25 +0.6 99,197 + IAI47_19370 0.25 -0.5 99,197 + IAI47_19370 0.25 -0.9 99,198 - IAI47_19370 0.25 -0.9 99,198 - IAI47_19370 0.25 +0.1 99,198 - IAI47_19370 0.25 +0.6 99,198 - IAI47_19370 0.25 -0.4 99,198 - IAI47_19370 0.25 +0.6 99,233 + IAI47_19370 0.28 +0.0 99,233 + IAI47_19370 0.28 +0.3 99,233 + IAI47_19370 0.28 +1.2 99,233 + IAI47_19370 0.28 -0.4 99,233 + IAI47_19370 0.28 +2.8 99,234 - IAI47_19370 0.28 -0.7 99,234 - IAI47_19370 0.28 -0.0 99,234 - IAI47_19370 0.28 +1.4 99,234 - -0.4 99,234 - IAI47_19370 0.28 +0.5 99,234 - IAI47_19370 0.28 +0.2 99,351 + IAI47_19370 0.37 +0.4 99,354 + IAI47_19370 0.37 +1.1 99,354 + IAI47_19370 0.37 +0.3 99,354 + IAI47_19370 0.37 +0.6 99,354 + IAI47_19370 0.37 -0.0 99,354 + IAI47_19370 0.37 -1.1 99,355 - IAI47_19370 0.37 -1.0 99,355 - IAI47_19370 0.37 -2.1 99,355 - IAI47_19370 0.37 -2.1 99,355 - IAI47_19370 0.37 -0.9 99,355 - IAI47_19370 0.37 +0.6 99,355 - IAI47_19370 0.37 -0.8 99,359 + IAI47_19370 0.38 -1.5 99,359 + IAI47_19370 0.38 -0.4 99,359 + IAI47_19370 0.38 -1.1 99,359 + IAI47_19370 0.38 -0.4 99,360 - IAI47_19370 0.38 +1.4 99,433 + IAI47_19370 0.44 -0.9 99,434 - IAI47_19370 0.44 +0.3 99,446 + IAI47_19370 0.45 +0.3 99,446 + IAI47_19370 0.45 +0.2 99,446 + IAI47_19370 0.45 -0.2 99,446 + IAI47_19370 0.45 -0.2 99,446 + IAI47_19370 0.45 +0.8 99,446 + IAI47_19370 0.45 -0.1 99,447 - IAI47_19370 0.45 -1.7 99,447 - IAI47_19370 0.45 -1.5 99,450 + IAI47_19370 0.45 +0.6 99,450 + IAI47_19370 0.45 +0.6 99,450 + IAI47_19370 0.45 +0.6 99,450 + IAI47_19370 0.45 +0.7 99,450 + IAI47_19370 0.45 -0.8 99,450 + IAI47_19370 0.45 +1.9 99,450 + IAI47_19370 0.45 -1.6 99,450 + IAI47_19370 0.45 -1.1 99,450 + IAI47_19370 0.45 -0.1 99,451 - IAI47_19370 0.45 -1.1 99,451 - IAI47_19370 0.45 -0.6 99,451 - IAI47_19370 0.45 -0.4 99,451 - IAI47_19370 0.45 -0.0 99,451 - IAI47_19370 0.45 +1.2 99,451 - IAI47_19370 0.45 +0.2 99,451 - IAI47_19370 0.45 -0.2 99,451 - IAI47_19370 0.45 -1.6 99,451 - IAI47_19370 0.45 +1.2 99,451 - IAI47_19370 0.45 -0.3 99,451 - IAI47_19370 0.45 -1.2 99,452 + IAI47_19370 0.45 +0.6 99,452 + IAI47_19370 0.45 -0.1 99,453 - IAI47_19370 0.45 +0.8 99,453 - IAI47_19370 0.45 +1.1 99,468 + IAI47_19370 0.47 +0.1
Or see this region's nucleotide sequence