Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19320 and IAI47_19325 are separated by 654 nucleotides IAI47_19325 and IAI47_19330 are separated by 506 nucleotides
IAI47_19320: IAI47_19320 - LysE family translocator, at 88,682 to 89,314
_19320
IAI47_19325: IAI47_19325 - transposase, at 89,969 to 90,253
_19325
IAI47_19330: IAI47_19330 - hypothetical protein, at 90,760 to 91,107
_19330
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 88.994 kb on + strand, within IAI47_19320 at 88.994 kb on + strand, within IAI47_19320 at 89.039 kb on - strand, within IAI47_19320 at 89.058 kb on + strand, within IAI47_19320 at 89.061 kb on - strand, within IAI47_19320 at 89.098 kb on - strand, within IAI47_19320 at 89.098 kb on - strand, within IAI47_19320 at 89.104 kb on - strand, within IAI47_19320 at 89.150 kb on + strand, within IAI47_19320 at 89.150 kb on + strand, within IAI47_19320 at 89.151 kb on - strand, within IAI47_19320 at 89.151 kb on - strand, within IAI47_19320 at 89.154 kb on + strand, within IAI47_19320 at 89.155 kb on - strand, within IAI47_19320 at 89.155 kb on - strand, within IAI47_19320 at 89.155 kb on - strand, within IAI47_19320 at 89.156 kb on + strand, within IAI47_19320 at 89.156 kb on + strand, within IAI47_19320 at 89.183 kb on + strand, within IAI47_19320 at 89.184 kb on - strand, within IAI47_19320 at 89.190 kb on - strand, within IAI47_19320 at 89.217 kb on - strand, within IAI47_19320 at 89.236 kb on - strand, within IAI47_19320 at 89.258 kb on + strand at 89.259 kb on - strand at 89.259 kb on - strand at 89.303 kb on - strand at 89.352 kb on - strand at 89.374 kb on + strand at 89.391 kb on - strand at 89.419 kb on - strand at 89.450 kb on + strand at 89.473 kb on - strand at 89.497 kb on + strand at 89.507 kb on - strand at 89.510 kb on + strand at 89.535 kb on - strand at 89.548 kb on + strand at 89.552 kb on - strand at 89.602 kb on + strand at 89.619 kb on - strand at 89.658 kb on - strand at 89.689 kb on + strand at 89.736 kb on - strand at 89.864 kb on + strand at 89.865 kb on - strand at 89.866 kb on + strand at 89.866 kb on + strand at 89.867 kb on - strand at 89.910 kb on + strand at 89.910 kb on + strand at 89.915 kb on - strand at 89.926 kb on - strand at 89.939 kb on + strand at 89.940 kb on - strand at 89.957 kb on + strand at 89.959 kb on + strand at 89.960 kb on - strand at 89.960 kb on - strand at 89.960 kb on - strand at 90.005 kb on + strand, within IAI47_19325 at 90.005 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.049 kb on + strand, within IAI47_19325 at 90.050 kb on - strand, within IAI47_19325 at 90.050 kb on - strand, within IAI47_19325 at 90.090 kb on - strand, within IAI47_19325 at 90.142 kb on + strand, within IAI47_19325 at 90.245 kb on + strand at 90.245 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.284 kb on + strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.285 kb on - strand at 90.287 kb on + strand at 90.288 kb on - strand at 90.298 kb on - strand at 90.298 kb on - strand at 90.301 kb on + strand at 90.301 kb on + strand at 90.301 kb on + strand at 90.327 kb on + strand at 90.328 kb on - strand at 90.402 kb on + strand at 90.402 kb on + strand at 90.403 kb on - strand at 90.403 kb on - strand at 90.419 kb on + strand at 90.419 kb on + strand at 90.489 kb on + strand at 90.490 kb on - strand at 90.530 kb on - strand at 90.557 kb on + strand at 90.601 kb on + strand at 90.695 kb on + strand at 90.696 kb on - strand at 90.696 kb on - strand at 90.719 kb on + strand at 90.719 kb on + strand at 90.720 kb on - strand at 90.726 kb on + strand at 90.726 kb on + strand at 90.726 kb on + strand at 90.726 kb on + strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.727 kb on - strand at 90.775 kb on - strand at 90.800 kb on + strand, within IAI47_19330 at 90.800 kb on + strand, within IAI47_19330 at 90.801 kb on - strand, within IAI47_19330 at 90.825 kb on + strand, within IAI47_19330 at 90.825 kb on + strand, within IAI47_19330 at 90.826 kb on - strand, within IAI47_19330 at 90.884 kb on + strand, within IAI47_19330 at 90.897 kb on + strand, within IAI47_19330 at 90.898 kb on - strand, within IAI47_19330 at 90.951 kb on + strand, within IAI47_19330 at 90.951 kb on + strand, within IAI47_19330 at 90.952 kb on - strand, within IAI47_19330 at 90.952 kb on - strand, within IAI47_19330 at 90.968 kb on + strand, within IAI47_19330 at 90.969 kb on - strand, within IAI47_19330 at 90.975 kb on + strand, within IAI47_19330 at 90.975 kb on + strand, within IAI47_19330 at 90.976 kb on - strand, within IAI47_19330 at 90.993 kb on + strand, within IAI47_19330 at 90.993 kb on + strand, within IAI47_19330 at 90.993 kb on + strand, within IAI47_19330 at 91.006 kb on + strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.007 kb on - strand, within IAI47_19330 at 91.032 kb on + strand, within IAI47_19330 at 91.032 kb on + strand, within IAI47_19330 at 91.043 kb on + strand, within IAI47_19330 at 91.052 kb on - strand, within IAI47_19330 at 91.106 kb on - strand at 91.126 kb on + strand at 91.217 kb on - strand at 91.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 88,994 + IAI47_19320 0.49 +0.8 88,994 + IAI47_19320 0.49 -0.8 89,039 - IAI47_19320 0.56 -0.7 89,058 + IAI47_19320 0.59 -0.6 89,061 - IAI47_19320 0.60 -0.0 89,098 - IAI47_19320 0.66 -0.4 89,098 - IAI47_19320 0.66 +1.4 89,104 - IAI47_19320 0.67 -1.2 89,150 + IAI47_19320 0.74 +0.4 89,150 + IAI47_19320 0.74 -1.5 89,151 - IAI47_19320 0.74 +0.4 89,151 - IAI47_19320 0.74 -1.2 89,154 + IAI47_19320 0.75 -0.0 89,155 - IAI47_19320 0.75 -0.7 89,155 - IAI47_19320 0.75 -0.9 89,155 - IAI47_19320 0.75 +0.2 89,156 + IAI47_19320 0.75 -0.3 89,156 + IAI47_19320 0.75 -1.8 89,183 + IAI47_19320 0.79 +0.4 89,184 - IAI47_19320 0.79 -0.4 89,190 - IAI47_19320 0.80 -0.8 89,217 - IAI47_19320 0.85 +0.8 89,236 - IAI47_19320 0.88 -1.6 89,258 + +0.8 89,259 - +0.5 89,259 - -0.8 89,303 - -0.3 89,352 - +1.4 89,374 + +0.8 89,391 - -0.9 89,419 - +1.7 89,450 + +0.8 89,473 - +0.1 89,497 + +1.6 89,507 - -0.8 89,510 + -0.8 89,535 - +1.4 89,548 + -0.6 89,552 - +1.3 89,602 + +0.6 89,619 - +1.2 89,658 - -0.2 89,689 + -0.4 89,736 - -0.0 89,864 + +0.5 89,865 - -0.6 89,866 + +0.3 89,866 + -1.2 89,867 - -0.8 89,910 + +0.8 89,910 + +1.7 89,915 - -0.1 89,926 - +0.4 89,939 + -0.8 89,940 - -1.5 89,957 + -1.6 89,959 + -2.2 89,960 - +1.0 89,960 - +0.5 89,960 - -1.4 90,005 + IAI47_19325 0.13 +1.8 90,005 + IAI47_19325 0.13 -0.7 90,049 + IAI47_19325 0.28 +0.2 90,049 + IAI47_19325 0.28 -0.4 90,049 + IAI47_19325 0.28 +1.6 90,049 + IAI47_19325 0.28 +0.2 90,049 + IAI47_19325 0.28 +1.6 90,049 + IAI47_19325 0.28 +1.0 90,050 - IAI47_19325 0.28 +0.6 90,050 - IAI47_19325 0.28 +0.7 90,090 - IAI47_19325 0.42 -0.4 90,142 + IAI47_19325 0.61 -1.5 90,245 + +0.6 90,245 + +0.1 90,284 + +0.4 90,284 + -0.9 90,284 + +0.6 90,284 + -0.5 90,284 + +0.6 90,284 + +0.6 90,285 - +0.3 90,285 - +0.8 90,285 - -0.2 90,285 - +0.4 90,285 - -0.7 90,287 + -2.1 90,288 - +1.5 90,298 - -0.4 90,298 - -0.7 90,301 + -0.4 90,301 + -1.2 90,301 + +0.3 90,327 + -0.4 90,328 - -0.0 90,402 + -0.4 90,402 + -0.4 90,403 - +2.3 90,403 - -1.1 90,419 + -0.4 90,419 + +0.8 90,489 + -1.2 90,490 - +0.8 90,530 - +0.7 90,557 + -0.3 90,601 + +0.8 90,695 + +0.5 90,696 - -0.7 90,696 - +1.1 90,719 + -0.2 90,719 + -0.8 90,720 - -0.2 90,726 + +1.2 90,726 + -1.9 90,726 + -1.2 90,726 + -0.2 90,727 - -0.3 90,727 - +0.8 90,727 - -0.1 90,727 - +1.5 90,727 - -1.2 90,727 - +1.2 90,727 - +0.6 90,727 - -1.9 90,727 - +1.4 90,775 - +1.5 90,800 + IAI47_19330 0.11 -0.1 90,800 + IAI47_19330 0.11 -1.7 90,801 - IAI47_19330 0.12 +1.4 90,825 + IAI47_19330 0.19 +1.0 90,825 + IAI47_19330 0.19 +1.1 90,826 - IAI47_19330 0.19 +0.9 90,884 + IAI47_19330 0.36 -0.6 90,897 + IAI47_19330 0.39 +0.4 90,898 - IAI47_19330 0.40 +2.2 90,951 + IAI47_19330 0.55 -1.1 90,951 + IAI47_19330 0.55 +2.1 90,952 - IAI47_19330 0.55 +0.9 90,952 - IAI47_19330 0.55 -1.1 90,968 + IAI47_19330 0.60 -0.7 90,969 - IAI47_19330 0.60 -0.0 90,975 + IAI47_19330 0.62 +0.1 90,975 + IAI47_19330 0.62 +1.4 90,976 - IAI47_19330 0.62 -1.3 90,993 + IAI47_19330 0.67 -0.9 90,993 + IAI47_19330 0.67 -1.1 90,993 + IAI47_19330 0.67 -0.1 91,006 + IAI47_19330 0.71 -2.0 91,007 - IAI47_19330 0.71 +2.6 91,007 - IAI47_19330 0.71 +1.1 91,007 - IAI47_19330 0.71 -1.5 91,007 - IAI47_19330 0.71 -0.4 91,032 + IAI47_19330 0.78 +0.3 91,032 + IAI47_19330 0.78 -1.2 91,043 + IAI47_19330 0.81 -0.0 91,052 - IAI47_19330 0.84 +3.4 91,106 - -1.9 91,126 + +0.3 91,217 - +0.2 91,225 + +1.7
Or see this region's nucleotide sequence