Strain Fitness in Pantoea sp. MT58 around IAI47_18565

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,950,432	+				-2.2
3,950,433	-				+0.1
3,950,433	-				+0.7
3,950,436	-				+0.2
3,950,436	-				+0.8
3,950,436	-				-2.1
3,950,517	+		IAI47_18560	0.18	-0.4
3,950,517	+		IAI47_18560	0.18	-2.4
3,950,518	-		IAI47_18560	0.19	-2.0
3,950,518	-		IAI47_18560	0.19	+0.1
3,950,518	-		IAI47_18560	0.19	+1.1
3,950,529	+		IAI47_18560	0.20	-0.2
3,950,586	+		IAI47_18560	0.27	-0.2
3,950,586	+		IAI47_18560	0.27	+1.0
3,950,586	+		IAI47_18560	0.27	-0.2
3,950,587	-		IAI47_18560	0.28	-0.6
3,950,587	-		IAI47_18560	0.28	-0.0
3,950,587	-		IAI47_18560	0.28	-1.6
3,950,587	-		IAI47_18560	0.28	-0.3
3,950,589	+		IAI47_18560	0.28	-0.6
3,950,590	-		IAI47_18560	0.28	+1.9
3,950,590	-		IAI47_18560	0.28	-0.0
3,950,590	-		IAI47_18560	0.28	-0.4
3,950,615	+		IAI47_18560	0.31	-1.2
3,950,615	+		IAI47_18560	0.31	-1.7
3,950,615	+		IAI47_18560	0.31	-0.6
3,950,615	+		IAI47_18560	0.31	+2.3
3,950,616	-		IAI47_18560	0.31	+1.0
3,950,616	-		IAI47_18560	0.31	+4.2
3,950,621	+		IAI47_18560	0.32	+0.9
3,950,621	+		IAI47_18560	0.32	-0.2
3,950,622	-		IAI47_18560	0.32	-0.5
3,950,655	+		IAI47_18560	0.36	+0.5
3,950,655	+		IAI47_18560	0.36	-2.5
3,950,655	+		IAI47_18560	0.36	+0.8
3,950,656	-		IAI47_18560	0.36	+0.1
3,950,755	+		IAI47_18560	0.49	+1.6
3,950,755	+		IAI47_18560	0.49	+0.7
3,950,756	-		IAI47_18560	0.49	-0.5
3,950,756	-		IAI47_18560	0.49	-0.4
3,950,827	+		IAI47_18560	0.59	-0.1
3,950,827	+		IAI47_18560	0.59	+0.4
3,950,827	+		IAI47_18560	0.59	+0.8
3,950,827	+		IAI47_18560	0.59	-1.3
3,950,827	+		IAI47_18560	0.59	-0.4
3,950,827	+		IAI47_18560	0.59	+0.4
3,950,827	+		IAI47_18560	0.59	+0.9
3,950,827	+		IAI47_18560	0.59	-0.5
3,950,827	+		IAI47_18560	0.59	-0.3
3,950,827	+		IAI47_18560	0.59	-0.4
3,950,827	+		IAI47_18560	0.59	-0.1
3,950,828	-		IAI47_18560	0.59	-1.5
3,951,013	+		IAI47_18560	0.83	-0.7
3,951,013	+		IAI47_18560	0.83	-1.0
3,951,013	+		IAI47_18560	0.83	+0.0
3,951,013	+		IAI47_18560	0.83	+0.6
3,951,013	+		IAI47_18560	0.83	-0.7
3,951,013	+		IAI47_18560	0.83	-0.1
3,951,014	-		IAI47_18560	0.83	-0.4
3,951,014	-		IAI47_18560	0.83	-0.8
3,951,014	-		IAI47_18560	0.83	-0.7
3,951,014	-		IAI47_18560	0.83	+0.6
3,951,014	-		IAI47_18560	0.83	+1.9
3,951,032	+		IAI47_18560	0.85	-0.4
3,951,032	+		IAI47_18560	0.85	-1.1
3,951,032	+		IAI47_18560	0.85	-0.2
3,951,032	+		IAI47_18560	0.85	-0.1
3,951,033	-		IAI47_18560	0.85	-1.1
3,951,099	+				+1.9
3,951,100	-				-0.8
3,951,100	-				+1.5
3,951,129	+				-0.7
3,951,129	+				-0.4
3,951,130	-				+2.0
3,951,130	-				-1.1
3,951,132	+				-0.5
3,951,132	+				+0.7
3,951,132	+				+0.1
3,951,132	+				-0.1
3,951,133	-				+1.2
3,951,133	-				+0.9
3,951,133	-				+0.4
3,951,133	-				-0.3
3,951,133	-				-1.9
3,951,150	+				+1.3
3,951,150	+				+0.9
3,951,150	+				+0.6
3,951,150	+				+2.3
3,951,150	+				-0.0
3,951,150	+				+1.0
3,951,150	+				+2.9
3,951,150	+				+0.7
3,951,150	+				+1.0
3,951,150	+				+0.9
3,951,151	-				+0.8
3,951,151	-				+0.3
3,951,151	-				-0.2
3,951,151	-				-0.5
3,951,151	-				-1.6
3,951,151	-				-1.3
3,951,151	-				-1.9
3,951,151	-				-0.3
3,951,151	-				+0.2
3,951,165	+				+1.8
3,951,165	+				+1.0
3,951,216	-				-1.5
3,951,216	-				-1.6
3,951,216	-				-1.6
3,951,218	+				+0.8
3,951,218	+				-0.0
3,951,218	+				+1.0
3,951,218	+				+1.4
3,951,218	+				-1.4
3,951,218	+				+0.2
3,951,218	+				+0.9
3,951,218	+				-0.9
3,951,219	-				-0.7
3,951,219	-				+0.5
3,951,219	-				-2.3
3,951,240	+				+0.6
3,951,241	-				-0.4
3,951,241	-				+1.0
3,951,241	-				-1.0
3,951,241	-				+0.1
3,951,274	+				-0.8
3,951,274	+				-0.5
3,951,275	-				-0.3
3,951,381	+				+4.8
3,951,381	+				-1.2
3,951,381	+				+1.1
3,951,396	+				-0.7
3,951,396	+				+0.9
3,951,405	-				-0.4
3,951,405	-				+0.8
3,951,450	+				+1.0
3,951,450	+				-0.8
3,951,523	-		IAI47_18565	0.10	-0.8
3,951,523	-		IAI47_18565	0.10	-0.6
3,951,523	-		IAI47_18565	0.10	-0.2
3,951,523	-		IAI47_18565	0.10	-0.9
3,951,535	+		IAI47_18565	0.12	+1.2
3,951,535	+		IAI47_18565	0.12	+0.1
3,951,535	+		IAI47_18565	0.12	-0.4
3,951,535	+		IAI47_18565	0.12	-0.5
3,951,535	+		IAI47_18565	0.12	-1.6
3,951,536	-		IAI47_18565	0.12	-1.6
3,951,577	+		IAI47_18565	0.16	+2.3
3,951,577	+		IAI47_18565	0.16	+0.7
3,951,577	+		IAI47_18565	0.16	-0.7
3,951,577	+		IAI47_18565	0.16	+0.2
3,951,577	+		IAI47_18565	0.16	-0.6
3,951,577	+		IAI47_18565	0.16	-0.3
3,951,577	+		IAI47_18565	0.16	+0.7
3,951,578	-		IAI47_18565	0.16	-0.1
3,951,578	-		IAI47_18565	0.16	-0.8
3,951,578	-		IAI47_18565	0.16	+0.4
3,951,578	-		IAI47_18565	0.16	-0.5
3,951,578	-		IAI47_18565	0.16	+1.2
3,951,578	-		IAI47_18565	0.16	+1.0
3,951,578	-		IAI47_18565	0.16	-0.1
3,951,648	+		IAI47_18565	0.24	+2.7
3,951,675	+		IAI47_18565	0.27	+2.0
3,951,675	+		IAI47_18565	0.27	+1.0
3,951,675	+		IAI47_18565	0.27	+0.2
3,951,676	-		IAI47_18565	0.27	-1.4
3,951,676	-		IAI47_18565	0.27	+1.2
3,951,676	-		IAI47_18565	0.27	-0.1
3,951,676	-		IAI47_18565	0.27	-1.6
3,951,691	+		IAI47_18565	0.28	-1.0
3,951,691	+		IAI47_18565	0.28	-0.3
3,951,691	+		IAI47_18565	0.28	-2.4
3,951,691	+		IAI47_18565	0.28	+1.7
3,951,691	+		IAI47_18565	0.28	+1.7
3,951,691	+				-1.1
3,951,691	+		IAI47_18565	0.28	+0.2
3,951,691	-		IAI47_18565	0.28	+2.2
3,951,692	-		IAI47_18565	0.28	+1.8
3,951,692	-		IAI47_18565	0.28	-0.9
3,951,692	-		IAI47_18565	0.28	+0.5
3,951,692	-		IAI47_18565	0.28	+1.0
3,951,692	-		IAI47_18565	0.28	+0.1
3,951,692	-		IAI47_18565	0.28	+0.6
3,951,692	-		IAI47_18565	0.28	-0.4
3,951,692	-		IAI47_18565	0.28	+0.2
3,951,692	-		IAI47_18565	0.28	-0.4
3,951,723	+		IAI47_18565	0.32	+1.5
3,951,723	+		IAI47_18565	0.32	-0.8
3,951,723	+		IAI47_18565	0.32	+3.0
3,951,724	-		IAI47_18565	0.32	-1.3
3,951,724	-		IAI47_18565	0.32	-1.0
3,951,771	+		IAI47_18565	0.37	+2.0
3,951,771	+		IAI47_18565	0.37	-1.4
3,951,792	-		IAI47_18565	0.39	+0.4
3,951,792	-		IAI47_18565	0.39	+1.2
3,951,811	+		IAI47_18565	0.41	-0.0
3,951,811	+		IAI47_18565	0.41	+0.2
3,951,811	+		IAI47_18565	0.41	-0.7
3,951,817	+		IAI47_18565	0.42	-0.0
3,951,817	+		IAI47_18565	0.42	-0.9
3,951,817	+		IAI47_18565	0.42	-0.8
3,951,817	+		IAI47_18565	0.42	+0.8
3,951,817	+		IAI47_18565	0.42	+2.1
3,951,818	-		IAI47_18565	0.42	+0.3
3,951,818	-		IAI47_18565	0.42	+2.7
3,951,818	-		IAI47_18565	0.42	-1.1
3,951,823	+		IAI47_18565	0.42	+0.9
3,951,823	+		IAI47_18565	0.42	-0.2
3,951,823	+		IAI47_18565	0.42	+0.1
3,951,824	-		IAI47_18565	0.43	+0.3
3,951,846	+		IAI47_18565	0.45	+0.6
3,951,846	+		IAI47_18565	0.45	-0.9
3,951,875	+		IAI47_18565	0.48	+0.7
3,951,875	+		IAI47_18565	0.48	+1.6
3,951,876	-		IAI47_18565	0.48	-0.5
3,951,885	-		IAI47_18565	0.49	+1.6
3,951,885	-		IAI47_18565	0.49	+1.5
3,951,927	+		IAI47_18565	0.54	-1.6
3,951,927	+		IAI47_18565	0.54	-0.4
3,951,928	-		IAI47_18565	0.54	+1.0
3,951,928	-		IAI47_18565	0.54	+0.2
3,951,930	+		IAI47_18565	0.54	+0.6
3,951,930	+		IAI47_18565	0.54	+2.2
3,951,930	+		IAI47_18565	0.54	-0.1
3,951,930	+		IAI47_18565	0.54	+0.4
3,951,930	+		IAI47_18565	0.54	-0.6
3,951,930	+		IAI47_18565	0.54	-0.8
3,951,930	+		IAI47_18565	0.54	-0.6
3,951,931	-		IAI47_18565	0.54	+1.6
3,951,931	-		IAI47_18565	0.54	+0.3
3,951,931	-		IAI47_18565	0.54	+0.9
3,951,934	+		IAI47_18565	0.54	-0.5
3,951,934	+		IAI47_18565	0.54	+0.1
3,951,934	+		IAI47_18565	0.54	-1.4
3,951,934	+		IAI47_18565	0.54	+0.4
3,951,934	+		IAI47_18565	0.54	+2.9
3,951,935	-		IAI47_18565	0.54	-0.3
3,951,948	-		IAI47_18565	0.56	+1.0
3,951,948	-		IAI47_18565	0.56	-1.0
3,951,979	+		IAI47_18565	0.59	+0.7
3,951,979	+		IAI47_18565	0.59	+0.9
3,951,999	+		IAI47_18565	0.61	-2.4
3,951,999	+		IAI47_18565	0.61	-0.7
3,951,999	+		IAI47_18565	0.61	-0.7
3,952,000	-		IAI47_18565	0.61	-0.6
3,952,000	-		IAI47_18565	0.61	+1.4
3,952,000	-		IAI47_18565	0.61	-0.2
3,952,004	-		IAI47_18565	0.62	-0.2
3,952,203	+		IAI47_18565	0.83	-1.3
3,952,237	+		IAI47_18565	0.87	-0.1
3,952,238	-		IAI47_18565	0.87	+1.1
3,952,305	+				-0.8
3,952,331	+				+1.8
3,952,365	+				-0.7
3,952,366	-				-0.7
3,952,457	+				+0.4
3,952,457	+				-0.4
3,952,458	-				+0.4
3,952,458	-				+0.1
3,952,458	-				-1.4
3,952,488	+				+1.3
3,952,488	+				-1.6
3,952,488	+				-0.1
3,952,488	+				+0.2
3,952,489	+				-0.4
3,952,489	-				-0.6
3,952,489	-				+0.2
3,952,489	-				+2.9
3,952,489	-				-0.6
3,952,489	-				+0.6
3,952,489	-				-0.4
3,952,490	+				-1.0
3,952,490	+				+1.3
3,952,490	+				-0.4
3,952,491	-				+1.1
3,952,491	-				-2.8
3,952,491	-				-0.5
3,952,491	-				-0.0
3,952,491	-				+0.6
3,952,491	-				+2.3
3,952,500	+				+0.4
3,952,500	+				+3.6
3,952,501	-				-0.9
3,952,501	-				+1.8
3,952,501	-				+2.0
3,952,501	-				-0.8
3,952,501	-				-0.2
3,952,501	-				-0.0
3,952,502	+				+1.5
3,952,502	+				+1.6
3,952,503	-				-0.1
3,952,503	-				+3.2
3,952,503	-				+2.4
3,952,564	+				-0.9
3,952,564	+				-2.2
3,952,565	-				-0.0
3,952,565	-				-1.1
3,952,803	+		IAI47_18570	0.20	-0.6
3,952,803	+		IAI47_18570	0.20	-0.8
3,952,824	+		IAI47_18570	0.21	-0.4
3,952,839	+		IAI47_18570	0.22	-0.0
3,952,839	+		IAI47_18570	0.22	-1.2
3,952,840	-		IAI47_18570	0.22	+2.4
3,952,840	-		IAI47_18570	0.22	+1.0
3,952,901	+		IAI47_18570	0.25	-1.3
3,952,901	+		IAI47_18570	0.25	+0.1
3,952,901	+		IAI47_18570	0.25	+0.9
3,952,902	-		IAI47_18570	0.25	+1.0
3,952,902	-		IAI47_18570	0.25	-0.4
3,952,902	-		IAI47_18570	0.25	-0.8
3,952,907	-		IAI47_18570	0.26	-1.0
3,952,988	+		IAI47_18570	0.30	+1.8
3,952,988	+		IAI47_18570	0.30	+1.5
3,952,988	+		IAI47_18570	0.30	-0.4
3,952,988	+		IAI47_18570	0.30	-1.5
3,952,988	+		IAI47_18570	0.30	-1.6
3,952,988	+		IAI47_18570	0.30	+0.3
3,952,989	-		IAI47_18570	0.30	+1.0
3,952,989	-		IAI47_18570	0.30	-0.8
3,952,989	-		IAI47_18570	0.30	-1.0
3,952,989	-		IAI47_18570	0.30	-0.1
3,952,989	-		IAI47_18570	0.30	+0.7
3,952,989	-		IAI47_18570	0.30	-2.1
3,952,989	-		IAI47_18570	0.30	+0.4
3,952,989	-		IAI47_18570	0.30	-0.3
3,953,039	+		IAI47_18570	0.33	-0.6
3,953,039	+		IAI47_18570	0.33	-0.4
3,953,040	-		IAI47_18570	0.33	+1.1
3,953,074	-		IAI47_18570	0.35	-0.4
3,953,109	+		IAI47_18570	0.37	-0.6
3,953,130	+		IAI47_18570	0.38	+4.1
3,953,130	+		IAI47_18570	0.38	-1.9
3,953,130	+		IAI47_18570	0.38	+1.6
3,953,130	+		IAI47_18570	0.38	+0.7
3,953,131	-		IAI47_18570	0.38	+4.6
3,953,131	-		IAI47_18570	0.38	+0.7
3,953,131	-		IAI47_18570	0.38	+0.2
3,953,131	-		IAI47_18570	0.38	-0.6
3,953,133	+		IAI47_18570	0.39	-0.3
3,953,133	+		IAI47_18570	0.39	-1.2
3,953,133	+		IAI47_18570	0.39	-1.0
3,953,133	+		IAI47_18570	0.39	+3.3
3,953,133	+		IAI47_18570	0.39	-2.4
3,953,133	+		IAI47_18570	0.39	-1.4
3,953,134	-		IAI47_18570	0.39	-0.8
3,953,134	-		IAI47_18570	0.39	-0.2
3,953,134	-		IAI47_18570	0.39	+1.1
3,953,134	-		IAI47_18570	0.39	-1.2
3,953,134	-		IAI47_18570	0.39	-2.0
3,953,134	-		IAI47_18570	0.39	-0.9
3,953,165	+		IAI47_18570	0.40	-1.9
3,953,166	-		IAI47_18570	0.40	-0.9
3,953,166	-		IAI47_18570	0.40	+0.5
3,953,166	-		IAI47_18570	0.40	-0.4
3,953,166	-		IAI47_18570	0.40	-0.0
3,953,169	+		IAI47_18570	0.41	-0.2
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