Strain Fitness in Pantoea sp. MT58 around IAI47_14240

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,010,637	+		IAI47_14235	0.30	-1.3
3,010,638	-		IAI47_14235	0.30	-0.0
3,010,638	-		IAI47_14235	0.30	-0.4
3,010,643	+		IAI47_14235	0.30	+0.7
3,010,644	-		IAI47_14235	0.30	+1.7
3,010,644	-		IAI47_14235	0.30	+3.2
3,010,644	-		IAI47_14235	0.30	-1.8
3,010,648	-		IAI47_14235	0.30	-0.3
3,010,681	-		IAI47_14235	0.33	-1.1
3,010,696	+		IAI47_14235	0.34	+0.3
3,010,697	-		IAI47_14235	0.34	+1.0
3,010,700	-		IAI47_14235	0.34	-0.9
3,010,788	+		IAI47_14235	0.41	+1.4
3,010,793	+		IAI47_14235	0.41	-0.7
3,010,794	-		IAI47_14235	0.41	-1.3
3,010,795	+		IAI47_14235	0.41	-0.5
3,010,795	+		IAI47_14235	0.41	-0.7
3,010,799	+		IAI47_14235	0.41	+1.0
3,010,799	+		IAI47_14235	0.41	-1.5
3,010,799	+		IAI47_14235	0.41	-0.8
3,010,799	+		IAI47_14235	0.41	-0.3
3,010,812	+		IAI47_14235	0.42	-0.1
3,010,813	-		IAI47_14235	0.42	-0.7
3,010,849	-		IAI47_14235	0.45	+0.0
3,010,871	+		IAI47_14235	0.46	-0.1
3,010,871	+		IAI47_14235	0.46	+1.5
3,010,872	-		IAI47_14235	0.47	+0.7
3,010,888	-		IAI47_14235	0.48	+1.4
3,010,934	+		IAI47_14235	0.51	+3.6
3,010,934	+		IAI47_14235	0.51	-0.5
3,010,934	+		IAI47_14235	0.51	-1.2
3,010,934	+		IAI47_14235	0.51	+0.4
3,010,935	-		IAI47_14235	0.51	-0.3
3,010,935	-		IAI47_14235	0.51	+0.2
3,010,936	+		IAI47_14235	0.51	+1.2
3,010,937	-		IAI47_14235	0.51	-0.3
3,010,937	-		IAI47_14235	0.51	-1.5
3,010,937	-		IAI47_14235	0.51	+0.5
3,010,937	-		IAI47_14235	0.51	+0.0
3,010,937	-		IAI47_14235	0.51	-0.5
3,010,994	+		IAI47_14235	0.55	-1.3
3,010,994	+		IAI47_14235	0.55	-0.1
3,010,995	-		IAI47_14235	0.55	+1.0
3,010,995	-		IAI47_14235	0.55	-0.8
3,010,995	-		IAI47_14235	0.55	-0.0
3,010,995	-		IAI47_14235	0.55	-0.4
3,010,995	-		IAI47_14235	0.55	-0.9
3,010,995	-		IAI47_14235	0.55	-0.1
3,010,995	-		IAI47_14235	0.55	+1.1
3,011,082	+		IAI47_14235	0.62	-2.8
3,011,147	+		IAI47_14235	0.66	-0.1
3,011,147	+		IAI47_14235	0.66	+0.6
3,011,147	+		IAI47_14235	0.66	-0.9
3,011,147	+		IAI47_14235	0.66	+1.4
3,011,149	+		IAI47_14235	0.66	+2.1
3,011,149	+		IAI47_14235	0.66	+0.4
3,011,149	+		IAI47_14235	0.66	+0.7
3,011,149	+		IAI47_14235	0.66	-1.1
3,011,149	+		IAI47_14235	0.66	-0.3
3,011,149	+		IAI47_14235	0.66	+0.2
3,011,150	-		IAI47_14235	0.67	-1.7
3,011,150	-		IAI47_14235	0.67	+0.0
3,011,150	-		IAI47_14235	0.67	+1.7
3,011,150	-		IAI47_14235	0.67	+0.2
3,011,150	-		IAI47_14235	0.67	+0.8
3,011,150	-		IAI47_14235	0.67	-0.9
3,011,150	-		IAI47_14235	0.67	-0.7
3,011,151	+		IAI47_14235	0.67	+0.2
3,011,151	+		IAI47_14235	0.67	+0.3
3,011,151	+		IAI47_14235	0.67	+0.8
3,011,151	+		IAI47_14235	0.67	-0.1
3,011,151	+		IAI47_14235	0.67	+0.5
3,011,151	+		IAI47_14235	0.67	-2.0
3,011,151	+		IAI47_14235	0.67	+0.7
3,011,152	-		IAI47_14235	0.67	+0.2
3,011,152	-		IAI47_14235	0.67	-1.1
3,011,152	-		IAI47_14235	0.67	-0.6
3,011,152	-		IAI47_14235	0.67	-0.6
3,011,152	-		IAI47_14235	0.67	-0.3
3,011,152	-		IAI47_14235	0.67	+0.3
3,011,152	-		IAI47_14235	0.67	-2.4
3,011,152	-		IAI47_14235	0.67	-2.0
3,011,152	-		IAI47_14235	0.67	-1.3
3,011,152	-		IAI47_14235	0.67	-2.0
3,011,152	-		IAI47_14235	0.67	-0.2
3,011,156	+		IAI47_14235	0.67	-1.5
3,011,156	+		IAI47_14235	0.67	-1.0
3,011,156	+		IAI47_14235	0.67	+0.3
3,011,157	-		IAI47_14235	0.67	-0.5
3,011,163	+		IAI47_14235	0.67	-1.2
3,011,164	-		IAI47_14235	0.68	-0.8
3,011,184	-		IAI47_14235	0.69	-0.2
3,011,219	+		IAI47_14235	0.71	+0.5
3,011,235	+		IAI47_14235	0.73	-0.0
3,011,236	-		IAI47_14235	0.73	+0.7
3,011,236	-		IAI47_14235	0.73	-0.6
3,011,273	+		IAI47_14235	0.75	-1.1
3,011,273	+		IAI47_14235	0.75	-1.3
3,011,273	+		IAI47_14235	0.75	+2.4
3,011,273	+		IAI47_14235	0.75	-0.9
3,011,273	+		IAI47_14235	0.75	-0.3
3,011,299	-		IAI47_14235	0.77	-2.2
3,011,310	+		IAI47_14235	0.78	-0.7
3,011,311	-		IAI47_14235	0.78	+1.9
3,011,311	-		IAI47_14235	0.78	-2.4
3,011,311	-		IAI47_14235	0.78	+0.2
3,011,317	-		IAI47_14235	0.79	-0.1
3,011,367	-		IAI47_14235	0.82	-1.6
3,011,384	-		IAI47_14235	0.83	-2.2
3,011,392	+		IAI47_14235	0.84	+0.3
3,011,392	+		IAI47_14235	0.84	-0.3
3,011,392	+		IAI47_14235	0.84	+0.4
3,011,393	-		IAI47_14235	0.84	-0.8
3,011,393	-		IAI47_14235	0.84	+0.4
3,011,417	+		IAI47_14235	0.86	-1.6
3,011,417	+		IAI47_14235	0.86	-0.1
3,011,417	+		IAI47_14235	0.86	-0.6
3,011,417	+		IAI47_14235	0.86	+1.5
3,011,417	+		IAI47_14235	0.86	-0.5
3,011,418	-		IAI47_14235	0.86	-0.3
3,011,418	-		IAI47_14235	0.86	+0.1
3,011,418	-		IAI47_14235	0.86	+0.6
3,011,418	-		IAI47_14235	0.86	-1.3
3,011,418	-		IAI47_14235	0.86	-1.5
3,011,418	-		IAI47_14235	0.86	+0.0
3,011,418	-		IAI47_14235	0.86	-0.7
3,011,418	-		IAI47_14235	0.86	-0.8
3,011,418	-		IAI47_14235	0.86	-0.6
3,011,418	-		IAI47_14235	0.86	-0.2
3,011,418	-		IAI47_14235	0.86	-1.3
3,011,423	+		IAI47_14235	0.86	+0.3
3,011,423	+		IAI47_14235	0.86	+0.8
3,011,423	+		IAI47_14235	0.86	-0.8
3,011,424	-		IAI47_14235	0.86	+2.2
3,011,424	-		IAI47_14235	0.86	-0.3
3,011,424	-		IAI47_14235	0.86	+0.2
3,011,440	+		IAI47_14235	0.87	-0.9
3,011,441	-		IAI47_14235	0.87	+0.3
3,011,485	+				-0.3
3,011,485	+				+1.6
3,011,486	-				+0.5
3,011,489	+				-0.5
3,011,489	+				-0.2
3,011,490	-				+2.5
3,011,490	-				+1.6
3,011,490	-				+0.3
3,011,490	-				+0.0
3,011,491	+				+0.5
3,011,491	+				+0.4
3,011,491	+				-0.7
3,011,491	+				+0.7
3,011,491	+				+1.7
3,011,491	+				+1.0
3,011,491	+				+2.1
3,011,491	+				-2.0
3,011,492	-				-0.5
3,011,492	-				-0.3
3,011,492	-				+3.0
3,011,492	-				+0.9
3,011,492	-				-2.7
3,011,492	-				-0.2
3,011,492	-				+0.0
3,011,492	-				-0.4
3,011,533	+				+0.7
3,011,533	+				+2.2
3,011,533	+				+0.4
3,011,533	+				-0.1
3,011,533	+				-1.5
3,011,533	+				+1.2
3,011,533	+				-1.3
3,011,533	+				-0.9
3,011,533	+				+0.4
3,011,534	-				-1.6
3,011,534	-				+1.4
3,011,534	-				-0.1
3,011,534	-				-0.2
3,011,534	-				-1.6
3,011,534	-				+0.4
3,011,534	-				-0.3
3,011,553	+				-1.3
3,011,553	+				+0.3
3,011,554	-				-0.5
3,011,572	+				+1.0
3,011,572	+				+0.2
3,011,573	-				+0.4
3,011,573	-				+1.6
3,011,573	-				-2.1
3,011,590	+				-0.5
3,011,590	+				-0.5
3,011,590	+				+0.2
3,011,590	+				+2.4
3,011,591	-				+0.0
3,011,591	-				+0.5
3,011,620	+				+0.2
3,011,620	+				+0.0
3,011,621	-				-1.7
3,011,633	-				+0.7
3,011,706	-		IAI47_14240	0.14	+0.9
3,011,706	-		IAI47_14240	0.14	+0.7
3,011,706	-		IAI47_14240	0.14	-1.3
3,011,713	+		IAI47_14240	0.15	-0.2
3,011,713	+		IAI47_14240	0.15	+0.5
3,011,713	+		IAI47_14240	0.15	+0.2
3,011,714	-		IAI47_14240	0.16	+2.2
3,011,747	+		IAI47_14240	0.21	-0.2
3,011,747	+		IAI47_14240	0.21	+2.6
3,011,747	+		IAI47_14240	0.21	+0.4
3,011,747	+		IAI47_14240	0.21	+0.6
3,011,747	+		IAI47_14240	0.21	+1.9
3,011,747	+		IAI47_14240	0.21	-1.3
3,011,748	-		IAI47_14240	0.21	-1.0
3,011,748	-		IAI47_14240	0.21	+0.2
3,011,748	-		IAI47_14240	0.21	-0.4
3,011,796	+		IAI47_14240	0.28	+0.2
3,011,797	-		IAI47_14240	0.28	+0.2
3,011,797	-		IAI47_14240	0.28	+0.1
3,011,805	-		IAI47_14240	0.29	+1.5
3,011,812	+		IAI47_14240	0.30	-1.2
3,011,812	+		IAI47_14240	0.30	-0.3
3,011,812	+		IAI47_14240	0.30	+1.2
3,011,812	+		IAI47_14240	0.30	+0.3
3,011,813	-		IAI47_14240	0.31	+1.9
3,011,813	-		IAI47_14240	0.31	-2.0
3,011,814	-		IAI47_14240	0.31	+0.3
3,011,837	-		IAI47_14240	0.34	-0.3
3,011,850	+		IAI47_14240	0.36	-0.1
3,011,851	-		IAI47_14240	0.36	-0.2
3,011,853	+		IAI47_14240	0.37	+0.3
3,011,853	+		IAI47_14240	0.37	-0.2
3,011,853	+		IAI47_14240	0.37	-0.1
3,011,854	-		IAI47_14240	0.37	-0.2
3,011,854	-		IAI47_14240	0.37	+0.4
3,011,854	-		IAI47_14240	0.37	-1.1
3,011,854	-		IAI47_14240	0.37	+0.6
3,011,854	-		IAI47_14240	0.37	-0.2
3,011,874	+		IAI47_14240	0.40	+0.2
3,011,874	+		IAI47_14240	0.40	-0.7
3,011,874	+		IAI47_14240	0.40	-0.7
3,011,875	-		IAI47_14240	0.40	+2.7
3,011,875	-		IAI47_14240	0.40	-0.2
3,011,875	-		IAI47_14240	0.40	-0.3
3,011,875	-		IAI47_14240	0.40	+1.2
3,011,875	-		IAI47_14240	0.40	-0.5
3,011,934	+		IAI47_14240	0.49	-3.3
3,011,934	+		IAI47_14240	0.49	-1.2
3,011,935	-		IAI47_14240	0.49	-1.1
3,011,935	-		IAI47_14240	0.49	-0.1
3,011,935	-		IAI47_14240	0.49	+4.2
3,011,935	-		IAI47_14240	0.49	+0.2
3,011,935	-		IAI47_14240	0.49	-0.4
3,011,948	+		IAI47_14240	0.51	-2.1
3,011,948	+		IAI47_14240	0.51	-0.3
3,011,949	-		IAI47_14240	0.51	+2.7
3,011,949	-		IAI47_14240	0.51	+1.3
3,012,008	+		IAI47_14240	0.60	-1.1
3,012,009	-		IAI47_14240	0.60	+1.4
3,012,029	+		IAI47_14240	0.63	+0.7
3,012,029	+		IAI47_14240	0.63	-1.6
3,012,029	+		IAI47_14240	0.63	-0.3
3,012,029	+		IAI47_14240	0.63	-0.4
3,012,029	+		IAI47_14240	0.63	+0.7
3,012,029	+		IAI47_14240	0.63	+0.3
3,012,030	-		IAI47_14240	0.64	+2.0
3,012,030	-		IAI47_14240	0.64	+3.0
3,012,030	-		IAI47_14240	0.64	-0.8
3,012,030	-		IAI47_14240	0.64	+0.3
3,012,030	-		IAI47_14240	0.64	-0.3
3,012,030	-		IAI47_14240	0.64	+0.1
3,012,030	-		IAI47_14240	0.64	-0.2
3,012,030	-		IAI47_14240	0.64	+2.3
3,012,074	-		IAI47_14240	0.70	-0.3
3,012,125	+		IAI47_14240	0.78	-0.8
3,012,125	+		IAI47_14240	0.78	+1.0
3,012,126	-		IAI47_14240	0.78	+1.5
3,012,126	-		IAI47_14240	0.78	+0.5
3,012,136	+		IAI47_14240	0.80	+0.6
3,012,137	-		IAI47_14240	0.80	+1.2
3,012,137	-		IAI47_14240	0.80	-0.2
3,012,227	+				-1.7
3,012,228	-				+1.1
3,012,261	-				+0.9
3,012,261	-				+0.8
3,012,262	+				-0.1
3,012,294	+				+0.3
3,012,294	+				+1.2
3,012,294	+				+0.0
3,012,294	+				+0.3
3,012,294	+				+1.2
3,012,295	-				-0.1
3,012,295	-				-0.7
3,012,297	+				+0.3
3,012,297	+				+1.4
3,012,297	+				+2.5
3,012,298	-				+0.3
3,012,298	-				+0.7
3,012,298	-				+2.4
3,012,300	+				-0.3
3,012,318	+				-1.3
3,012,318	+				+1.4
3,012,319	-				-1.0
3,012,319	-				+0.5
3,012,319	-				+0.3
3,012,512	-		IAI47_14245	0.23	+0.2
3,012,546	+		IAI47_14245	0.27	-0.3
3,012,547	-		IAI47_14245	0.27	-0.6
3,012,618	+		IAI47_14245	0.33	+0.3
3,012,619	-		IAI47_14245	0.34	+3.3
3,012,619	-		IAI47_14245	0.34	-1.9
3,012,619	-		IAI47_14245	0.34	-0.3
3,012,619	-		IAI47_14245	0.34	-1.0
3,012,619	-		IAI47_14245	0.34	+2.4
3,012,677	+		IAI47_14245	0.39	-1.4
3,012,677	+		IAI47_14245	0.39	-0.7
3,012,677	+		IAI47_14245	0.39	-1.9
3,012,677	+		IAI47_14245	0.39	+0.8
3,012,678	-		IAI47_14245	0.39	+0.3
3,012,678	-		IAI47_14245	0.39	+0.7
3,012,678	-		IAI47_14245	0.39	+0.3
3,012,703	+		IAI47_14245	0.41	-0.6
3,012,703	+		IAI47_14245	0.41	+0.7
3,012,703	+		IAI47_14245	0.41	+0.9
3,012,703	+		IAI47_14245	0.41	-0.8
3,012,704	-		IAI47_14245	0.42	+0.0
3,012,715	+		IAI47_14245	0.43	+1.3
3,012,715	+		IAI47_14245	0.43	+0.2
3,012,715	+		IAI47_14245	0.43	+4.1
3,012,739	+		IAI47_14245	0.45	-0.3
3,012,740	-		IAI47_14245	0.45	-0.4
3,012,839	+		IAI47_14245	0.54	+0.0
3,012,839	+		IAI47_14245	0.54	+1.3
3,012,839	+		IAI47_14245	0.54	+1.9
3,012,839	+		IAI47_14245	0.54	+0.0
3,012,839	+		IAI47_14245	0.54	-0.4
3,012,839	+		IAI47_14245	0.54	+2.4
3,012,840	-		IAI47_14245	0.54	+0.8
3,012,840	-		IAI47_14245	0.54	+1.3
3,012,840	-		IAI47_14245	0.54	-1.1
3,012,840	-		IAI47_14245	0.54	+0.7
3,012,848	-		IAI47_14245	0.55	+1.1
3,012,861	-		IAI47_14245	0.56	+0.3
3,012,861	-		IAI47_14245	0.56	+1.3
3,012,951	+		IAI47_14245	0.65	+1.1
3,012,951	+		IAI47_14245	0.65	-0.3
3,012,952	-		IAI47_14245	0.65	+1.0
3,012,952	-		IAI47_14245	0.65	+0.6
3,012,952	-		IAI47_14245	0.65	+1.5
3,013,044	+		IAI47_14245	0.74	+0.4
3,013,059	-		IAI47_14245	0.75	-2.5
3,013,059	-		IAI47_14245	0.75	+1.1
3,013,107	+		IAI47_14245	0.80	-0.8
3,013,107	+		IAI47_14245	0.80	+0.9
3,013,107	+		IAI47_14245	0.80	-0.9
3,013,108	-		IAI47_14245	0.80	+0.2
3,013,108	-		IAI47_14245	0.80	+1.5
3,013,123	+		IAI47_14245	0.81	-2.7
3,013,123	+		IAI47_14245	0.81	-1.0
3,013,124	-		IAI47_14245	0.81	+1.1
3,013,124	-		IAI47_14245	0.81	+2.2
3,013,124	-		IAI47_14245	0.81	-0.1
3,013,134	+		IAI47_14245	0.82	-0.6
3,013,141	+		IAI47_14245	0.83	-1.3
3,013,142	-		IAI47_14245	0.83	-2.1
3,013,142	-		IAI47_14245	0.83	-0.2
3,013,142	-		IAI47_14245	0.83	-0.7
3,013,142	-		IAI47_14245	0.83	-0.5
3,013,144	+		IAI47_14245	0.83	+0.7
3,013,145	-		IAI47_14245	0.83	-0.3
3,013,165	-		IAI47_14245	0.85	+0.5
3,013,239	-				+0.0
3,013,239	-				-1.5
3,013,239	-				+0.1
3,013,239	-				+0.4
3,013,239	-				+0.7
3,013,239	-				+0.4
3,013,239	-				+0.5
3,013,240	+				+1.2
3,013,240	+				-1.9
3,013,240	+				+0.8
3,013,241	-				+2.0
3,013,241	-				-0.1
3,013,250	+				-0.4
3,013,250	+				+0.3
3,013,251	-				+0.2
3,013,251	-				-0.1
3,013,251	-				-1.1
3,013,251	-				-0.1
3,013,251	-				-0.1