Strain Fitness in Pantoea sp. MT58 around IAI47_14225

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,005,230	+		IAI47_14220	0.65	-0.5
3,005,230	+		IAI47_14220	0.65	+0.6
3,005,230	+		IAI47_14220	0.65	-0.3
3,005,230	+		IAI47_14220	0.65	+0.2
3,005,230	+		IAI47_14220	0.65	-0.3
3,005,230	+		IAI47_14220	0.65	-1.0
3,005,230	+		IAI47_14220	0.65	+0.8
3,005,230	+		IAI47_14220	0.65	-0.1
3,005,230	+		IAI47_14220	0.65	-2.7
3,005,230	+		IAI47_14220	0.65	+1.2
3,005,231	-		IAI47_14220	0.65	-2.1
3,005,231	-		IAI47_14220	0.65	+1.3
3,005,231	-		IAI47_14220	0.65	-1.8
3,005,231	-		IAI47_14220	0.65	-0.8
3,005,231	-		IAI47_14220	0.65	-0.1
3,005,231	-		IAI47_14220	0.65	+0.3
3,005,231	-		IAI47_14220	0.65	+5.3
3,005,231	-		IAI47_14220	0.65	-0.2
3,005,231	-		IAI47_14220	0.65	-0.2
3,005,231	-		IAI47_14220	0.65	+0.7
3,005,231	-		IAI47_14220	0.65	-0.5
3,005,231	-		IAI47_14220	0.65	-0.4
3,005,231	-		IAI47_14220	0.65	-1.0
3,005,231	-		IAI47_14220	0.65	+1.5
3,005,231	-		IAI47_14220	0.65	-2.4
3,005,231	-		IAI47_14220	0.65	-0.8
3,005,231	-		IAI47_14220	0.65	+0.1
3,005,231	-		IAI47_14220	0.65	+1.5
3,005,231	-		IAI47_14220	0.65	-1.8
3,005,246	-		IAI47_14220	0.66	+0.4
3,005,339	+		IAI47_14220	0.70	-1.5
3,005,340	-		IAI47_14220	0.70	+1.6
3,005,366	-		IAI47_14220	0.71	-0.1
3,005,391	-		IAI47_14220	0.72	+0.2
3,005,417	+		IAI47_14220	0.73	-0.7
3,005,440	+		IAI47_14220	0.74	-0.2
3,005,440	+		IAI47_14220	0.74	-1.0
3,005,441	-		IAI47_14220	0.74	+0.6
3,005,492	+		IAI47_14220	0.76	-0.7
3,005,492	+		IAI47_14220	0.76	+0.7
3,005,492	+		IAI47_14220	0.76	-1.4
3,005,493	-		IAI47_14220	0.76	-0.6
3,005,493	-		IAI47_14220	0.76	+0.0
3,005,493	-		IAI47_14220	0.76	-2.7
3,005,493	-		IAI47_14220	0.76	+1.6
3,005,493	-		IAI47_14220	0.76	+0.6
3,005,495	+		IAI47_14220	0.76	+2.6
3,005,495	+		IAI47_14220	0.76	+1.9
3,005,495	+		IAI47_14220	0.76	-0.1
3,005,495	+		IAI47_14220	0.76	+0.2
3,005,495	+		IAI47_14220	0.76	-0.0
3,005,495	+		IAI47_14220	0.76	+0.2
3,005,495	+		IAI47_14220	0.76	+0.8
3,005,495	+		IAI47_14220	0.76	-0.1
3,005,495	+		IAI47_14220	0.76	-0.7
3,005,495	+		IAI47_14220	0.76	+1.4
3,005,495	+		IAI47_14220	0.76	+0.3
3,005,495	+		IAI47_14220	0.76	-0.3
3,005,495	+		IAI47_14220	0.76	-0.8
3,005,495	+		IAI47_14220	0.76	-0.2
3,005,495	+		IAI47_14220	0.76	+1.5
3,005,496	-		IAI47_14220	0.76	+0.6
3,005,496	-		IAI47_14220	0.76	+1.4
3,005,496	-		IAI47_14220	0.76	+2.2
3,005,496	-		IAI47_14220	0.76	-0.3
3,005,496	-		IAI47_14220	0.76	+2.2
3,005,496	-		IAI47_14220	0.76	-1.5
3,005,496	-		IAI47_14220	0.76	-0.2
3,005,496	-		IAI47_14220	0.76	+0.4
3,005,496	-		IAI47_14220	0.76	-1.1
3,005,501	+		IAI47_14220	0.76	-1.7
3,005,501	+		IAI47_14220	0.76	+0.2
3,005,501	+		IAI47_14220	0.76	-1.3
3,005,501	+		IAI47_14220	0.76	+0.8
3,005,501	+		IAI47_14220	0.76	+1.3
3,005,501	+		IAI47_14220	0.76	+1.7
3,005,501	+		IAI47_14220	0.76	-0.7
3,005,501	+		IAI47_14220	0.76	-0.5
3,005,501	+		IAI47_14220	0.76	+1.3
3,005,502	-		IAI47_14220	0.76	+0.2
3,005,502	-		IAI47_14220	0.76	+0.1
3,005,502	-		IAI47_14220	0.76	-1.3
3,005,502	-		IAI47_14220	0.76	-0.6
3,005,502	-		IAI47_14220	0.76	+0.7
3,005,502	-		IAI47_14220	0.76	-1.2
3,005,575	+		IAI47_14220	0.79	+1.2
3,005,575	+		IAI47_14220	0.79	+5.1
3,005,576	-		IAI47_14220	0.79	-1.6
3,005,576	-		IAI47_14220	0.79	+0.0
3,005,583	+		IAI47_14220	0.79	+0.2
3,005,584	-		IAI47_14220	0.79	+0.2
3,005,584	-		IAI47_14220	0.79	-1.6
3,005,584	-		IAI47_14220	0.79	+1.7
3,005,648	-		IAI47_14220	0.82	+0.4
3,005,655	+		IAI47_14220	0.82	-1.2
3,005,656	-		IAI47_14220	0.82	+1.4
3,005,656	-		IAI47_14220	0.82	+1.1
3,005,731	+		IAI47_14220	0.85	+0.7
3,005,731	+		IAI47_14220	0.85	-1.7
3,005,731	+		IAI47_14220	0.85	-0.9
3,005,731	+		IAI47_14220	0.85	+1.5
3,005,731	+		IAI47_14220	0.85	-0.5
3,005,732	-		IAI47_14220	0.85	+0.6
3,005,732	-		IAI47_14220	0.85	+0.3
3,005,732	-		IAI47_14220	0.85	+0.6
3,005,732	-		IAI47_14220	0.85	+1.4
3,005,732	-		IAI47_14220	0.85	+1.1
3,005,732	-		IAI47_14220	0.85	+0.4
3,005,732	-		IAI47_14220	0.85	-0.8
3,005,764	+		IAI47_14220	0.86	-2.2
3,005,855	+		IAI47_14220	0.90	+1.6
3,005,869	+				+0.4
3,005,869	+				+1.2
3,005,869	+				+0.6
3,005,870	-				-0.2
3,005,896	+				-0.8
3,005,896	+				+0.2
3,005,896	+				+0.9
3,005,974	+				-0.2
3,005,974	+				+1.5
3,005,974	+				-1.4
3,005,974	+				-1.6
3,005,982	-				+0.1
3,005,993	+				+1.4
3,005,993	+				-0.5
3,005,993	+				-0.4
3,005,994	-				-0.1
3,005,994	-				-0.0
3,005,994	-				+1.1
3,005,994	-				-0.4
3,005,994	-				+0.1
3,005,994	-				+3.3
3,006,102	+				+0.6
3,006,103	-				-0.5
3,006,103	-				+0.6
3,006,131	-				-0.4
3,006,133	-				-1.6
3,006,135	+				-2.2
3,006,135	+				-3.2
3,006,135	+				-2.8
3,006,135	+				-0.7
3,006,135	+				+0.1
3,006,136	-				+1.7
3,006,136	-				+1.7
3,006,136	-				-0.7
3,006,136	-				-0.6
3,006,136	-				+2.2
3,006,136	-				-1.2
3,006,266	+				+0.6
3,006,269	+				-1.0
3,006,269	+				-0.1
3,006,269	+				-1.1
3,006,269	+				+0.6
3,006,270	-				-1.1
3,006,270	-				+0.2
3,006,356	+				+0.5
3,006,357	-				+0.2
3,006,357	-				-2.0
3,006,357	-				-1.0
3,006,365	+				-0.6
3,006,365	+				-0.3
3,006,366	-				+3.1
3,006,366	-				-1.8
3,006,368	+				+0.6
3,006,384	+				-1.0
3,006,385	-				-1.1
3,006,418	+				+1.9
3,006,419	-				-0.6
3,006,419	-				+1.7
3,006,419	-				-2.1
3,006,438	+				-0.1
3,006,438	+				-0.5
3,006,438	+				+0.4
3,006,438	+				+0.3
3,006,438	+				-2.2
3,006,438	+				-1.6
3,006,439	-				-0.3
3,006,439	-				-0.9
3,006,440	+				+1.4
3,006,440	+				+0.1
3,006,441	-				-0.7
3,006,441	-				-0.1
3,006,441	-				-1.1
3,006,441	-				+1.5
3,006,478	+				-1.3
3,006,478	+				-0.9
3,006,478	+				-1.4
3,006,478	+				+1.5
3,006,478	+				-0.2
3,006,478	+				-0.1
3,006,479	-				-0.2
3,006,479	-				-1.7
3,006,479	-				-0.9
3,006,479	-				-0.6
3,006,479	-				-0.7
3,006,479	-				-0.7
3,006,482	+				-0.2
3,006,482	+				+0.1
3,006,483	-				+0.2
3,006,483	-				+0.2
3,006,483	-				-0.8
3,006,483	-				-0.8
3,006,484	+				+1.5
3,006,484	+				+0.3
3,006,484	+				-1.2
3,006,484	+				-1.3
3,006,485	-				+0.0
3,006,485	-				+2.2
3,006,485	-				+0.2
3,006,485	-				+0.2
3,006,485	-				-1.5
3,006,485	-				+1.6
3,006,485	-				+0.3
3,006,485	-				+0.5
3,006,512	+		IAI47_14225	0.10	+1.8
3,006,512	+		IAI47_14225	0.10	-0.8
3,006,513	-		IAI47_14225	0.10	-0.7
3,006,578	+		IAI47_14225	0.12	-1.6
3,006,578	+		IAI47_14225	0.12	-2.2
3,006,578	+		IAI47_14225	0.12	+1.2
3,006,578	+		IAI47_14225	0.12	+0.7
3,006,578	+		IAI47_14225	0.12	+1.3
3,006,579	-		IAI47_14225	0.12	-0.1
3,006,579	-		IAI47_14225	0.12	-1.4
3,006,579	-		IAI47_14225	0.12	-1.1
3,006,588	+		IAI47_14225	0.12	-1.4
3,006,617	+		IAI47_14225	0.13	-0.1
3,006,618	-		IAI47_14225	0.13	-1.0
3,006,657	+		IAI47_14225	0.14	-1.0
3,006,658	-		IAI47_14225	0.14	-0.7
3,006,658	-		IAI47_14225	0.14	-0.7
3,006,658	-		IAI47_14225	0.14	-0.1
3,006,658	-		IAI47_14225	0.14	-2.5
3,006,674	+		IAI47_14225	0.15	+2.2
3,006,675	-		IAI47_14225	0.15	+1.4
3,006,675	-		IAI47_14225	0.15	+0.4
3,006,719	+		IAI47_14225	0.16	+0.2
3,006,719	+		IAI47_14225	0.16	+2.4
3,006,720	-		IAI47_14225	0.16	+0.2
3,006,720	-		IAI47_14225	0.16	+1.9
3,006,756	+		IAI47_14225	0.17	-2.7
3,006,756	+		IAI47_14225	0.17	-0.1
3,006,756	+		IAI47_14225	0.17	-0.7
3,006,757	-		IAI47_14225	0.17	-1.1
3,006,757	-		IAI47_14225	0.17	+0.6
3,006,770	+		IAI47_14225	0.18	-1.0
3,006,828	+		IAI47_14225	0.19	-0.4
3,006,828	+		IAI47_14225	0.19	-0.6
3,006,840	-		IAI47_14225	0.20	+3.5
3,006,840	-		IAI47_14225	0.20	+1.7
3,006,840	-		IAI47_14225	0.20	+2.1
3,006,840	-		IAI47_14225	0.20	+0.1
3,006,858	+		IAI47_14225	0.20	-1.1
3,006,858	+		IAI47_14225	0.20	+0.9
3,006,858	+		IAI47_14225	0.20	+0.3
3,006,859	-		IAI47_14225	0.20	+0.2
3,006,859	-		IAI47_14225	0.20	-0.3
3,006,859	-		IAI47_14225	0.20	+3.8
3,006,859	-		IAI47_14225	0.20	+1.5
3,006,859	-		IAI47_14225	0.20	-0.6
3,006,859	-		IAI47_14225	0.20	-0.3
3,006,859	-		IAI47_14225	0.20	+0.3
3,006,860	+		IAI47_14225	0.20	+1.2
3,006,860	+		IAI47_14225	0.20	-0.4
3,006,860	+		IAI47_14225	0.20	+0.7
3,006,860	+		IAI47_14225	0.20	+2.5
3,006,860	+		IAI47_14225	0.20	+0.2
3,006,861	-		IAI47_14225	0.20	-0.2
3,006,861	-		IAI47_14225	0.20	+1.7
3,006,899	+		IAI47_14225	0.21	-1.3
3,006,935	+		IAI47_14225	0.22	-0.2
3,006,936	-		IAI47_14225	0.23	+0.6
3,006,936	-		IAI47_14225	0.23	+1.9
3,006,947	+		IAI47_14225	0.23	-1.2
3,006,947	+		IAI47_14225	0.23	-2.7
3,006,947	+		IAI47_14225	0.23	-1.0
3,006,947	+		IAI47_14225	0.23	-1.3
3,006,947	+		IAI47_14225	0.23	-0.8
3,006,947	+		IAI47_14225	0.23	+0.6
3,006,947	+		IAI47_14225	0.23	+0.2
3,006,947	+		IAI47_14225	0.23	-0.4
3,006,948	-		IAI47_14225	0.23	+1.7
3,006,948	-		IAI47_14225	0.23	-0.1
3,006,948	-		IAI47_14225	0.23	-0.5
3,006,948	-		IAI47_14225	0.23	+0.6
3,006,948	-		IAI47_14225	0.23	-0.4
3,006,948	-		IAI47_14225	0.23	-0.4
3,006,949	+		IAI47_14225	0.23	+0.4
3,006,949	+		IAI47_14225	0.23	-0.4
3,006,949	+		IAI47_14225	0.23	-1.4
3,006,949	+		IAI47_14225	0.23	+0.5
3,006,950	-		IAI47_14225	0.23	-0.5
3,006,950	-		IAI47_14225	0.23	+0.3
3,006,950	-		IAI47_14225	0.23	-1.7
3,006,950	-		IAI47_14225	0.23	-0.1
3,006,980	-		IAI47_14225	0.24	-0.7
3,006,984	+		IAI47_14225	0.24	+0.3
3,006,984	+		IAI47_14225	0.24	-3.0
3,006,984	+		IAI47_14225	0.24	-0.1
3,007,014	+		IAI47_14225	0.25	-0.1
3,007,014	+		IAI47_14225	0.25	-0.0
3,007,015	-		IAI47_14225	0.25	-0.6
3,007,015	-		IAI47_14225	0.25	+1.0
3,007,041	+		IAI47_14225	0.26	+0.1
3,007,041	+		IAI47_14225	0.26	-0.1
3,007,042	-		IAI47_14225	0.26	-1.2
3,007,077	+		IAI47_14225	0.27	-0.0
3,007,088	+		IAI47_14225	0.27	+0.4
3,007,099	+		IAI47_14225	0.27	-1.1
3,007,099	+		IAI47_14225	0.27	+2.1
3,007,099	+		IAI47_14225	0.27	+0.9
3,007,099	+		IAI47_14225	0.27	+0.0
3,007,099	+		IAI47_14225	0.27	+0.9
3,007,099	+		IAI47_14225	0.27	-2.1
3,007,100	-		IAI47_14225	0.27	-2.2
3,007,100	-		IAI47_14225	0.27	+1.0
3,007,100	-		IAI47_14225	0.27	+0.8
3,007,155	-		IAI47_14225	0.29	-1.2
3,007,175	+		IAI47_14225	0.29	-0.3
3,007,175	+		IAI47_14225	0.29	-1.0
3,007,175	+		IAI47_14225	0.29	+0.9
3,007,175	+		IAI47_14225	0.29	+1.4
3,007,176	-		IAI47_14225	0.29	-0.1
3,007,201	+		IAI47_14225	0.30	+0.6
3,007,247	+		IAI47_14225	0.32	+0.3
3,007,247	+		IAI47_14225	0.32	-1.7
3,007,248	-		IAI47_14225	0.32	-0.5
3,007,262	+		IAI47_14225	0.32	-0.7
3,007,262	+		IAI47_14225	0.32	-0.8
3,007,262	+		IAI47_14225	0.32	+1.1
3,007,263	-		IAI47_14225	0.32	+1.2
3,007,263	-		IAI47_14225	0.32	+0.3
3,007,287	+		IAI47_14225	0.33	+0.2
3,007,287	+		IAI47_14225	0.33	-1.5
3,007,287	+		IAI47_14225	0.33	+1.3
3,007,287	+		IAI47_14225	0.33	+0.2
3,007,288	-		IAI47_14225	0.33	-0.6
3,007,323	+		IAI47_14225	0.34	+0.2
3,007,324	-		IAI47_14225	0.34	-1.3
3,007,337	+		IAI47_14225	0.34	-0.7
3,007,337	+		IAI47_14225	0.34	+0.2
3,007,338	-		IAI47_14225	0.34	-0.2
3,007,338	-		IAI47_14225	0.34	+0.2
3,007,340	+		IAI47_14225	0.34	+0.8
3,007,364	+		IAI47_14225	0.35	+0.2
3,007,364	+		IAI47_14225	0.35	+1.2
3,007,365	-		IAI47_14225	0.35	-0.6
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